BenchRep-T / immuneML /export_report.json
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{
"airr_columns": [
"sequence_id",
"sequence",
"rev_comp",
"productive",
"vj_in_frame",
"stop_codon",
"locus",
"v_call",
"d_call",
"j_call",
"sequence_alignment",
"germline_alignment",
"v_cigar",
"d_cigar",
"j_cigar",
"junction",
"junction_aa",
"cdr3_aa",
"duplicate_count",
"repertoire_id"
],
"cohorts": {
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"diseases": {
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"Healthy/Background": 421
},
"empty_duplicate_count": 8313647,
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"junction_methods": {
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},
"junction_rejections": {
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"stop": 15
},
"metadata_columns": [
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"subject_id",
"identifier",
"participant_label",
"disease",
"fold",
"age",
"sex",
"ancestry"
],
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"rows": 119423488,
"truncated": false
},
"malid": {
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"diseases": {
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"HIV": 98,
"Healthy/Background": 197,
"Influenza": 37,
"Lupus": 64,
"T1D": 96
},
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},
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},
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"ancestry"
],
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},
"mitchell-t1d": {
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},
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},
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},
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],
"repertoires": 196,
"rows": 26298037,
"truncated": false
},
"ra": {
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"diseases": {
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"Rheumatoid Arthritis": 71
},
"empty_duplicate_count": 0,
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],
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},
"rawat-t1d": {
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},
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},
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],
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"rows": 55538654,
"truncated": false
},
"tb": {
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"diseases": {
"Controller": 77,
"Progressor": 63
},
"empty_duplicate_count": 0,
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"metadata_columns": [
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],
"repertoires": 140,
"rows": 13963315,
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}
},
"source": {
"repo_id": "lordim/BenchRep-T"
}
}