Download immuneML/export_report.json from lordim/BenchRep-T: direct link, hf CLI and curl.
- Browser
- Download file 4.64 kB
-
https://huggingface.co/datasets/lordim/BenchRep-T/resolve/main/immuneML/export_report.json
- Command line
-
hf download hf://datasets/lordim/BenchRep-T/immuneML/export_report.json
-
curl -L -o export_report.json https://huggingface.co/datasets/lordim/BenchRep-T/resolve/main/immuneML/export_report.json
4.64 kB
| { | |
| "airr_columns": [ | |
| "sequence_id", | |
| "sequence", | |
| "rev_comp", | |
| "productive", | |
| "vj_in_frame", | |
| "stop_codon", | |
| "locus", | |
| "v_call", | |
| "d_call", | |
| "j_call", | |
| "sequence_alignment", | |
| "germline_alignment", | |
| "v_cigar", | |
| "d_cigar", | |
| "j_cigar", | |
| "junction", | |
| "junction_aa", | |
| "cdr3_aa", | |
| "duplicate_count", | |
| "repertoire_id" | |
| ], | |
| "cohorts": { | |
| "cmv": { | |
| "canonical_anchor_rate": 0.994484, | |
| "diseases": { | |
| "CMV": 340, | |
| "Healthy/Background": 421 | |
| }, | |
| "empty_duplicate_count": 8313647, | |
| "junction_fill_rate": 0.999979, | |
| "junction_filled": 119420939, | |
| "junction_methods": { | |
| "sequence_search": 119420939 | |
| }, | |
| "junction_rejections": { | |
| "ambiguous": 2534, | |
| "stop": 15 | |
| }, | |
| "metadata_columns": [ | |
| "filename", | |
| "subject_id", | |
| "identifier", | |
| "participant_label", | |
| "disease", | |
| "fold", | |
| "age", | |
| "sex", | |
| "ancestry" | |
| ], | |
| "repertoires": 761, | |
| "rows": 119423488, | |
| "truncated": false | |
| }, | |
| "malid": { | |
| "canonical_anchor_rate": 0.995961, | |
| "diseases": { | |
| "Covid19": 58, | |
| "HIV": 98, | |
| "Healthy/Background": 197, | |
| "Influenza": 37, | |
| "Lupus": 64, | |
| "T1D": 96 | |
| }, | |
| "empty_duplicate_count": 71302390, | |
| "junction_fill_rate": 0.997776, | |
| "junction_filled": 71143782, | |
| "junction_methods": { | |
| "malid_regions": 71143782 | |
| }, | |
| "junction_rejections": { | |
| "length": 11577, | |
| "mismatch": 146897, | |
| "stop": 134 | |
| }, | |
| "metadata_columns": [ | |
| "filename", | |
| "subject_id", | |
| "identifier", | |
| "participant_label", | |
| "disease", | |
| "fold", | |
| "age", | |
| "sex", | |
| "ancestry" | |
| ], | |
| "repertoires": 550, | |
| "rows": 71302390, | |
| "truncated": false | |
| }, | |
| "mitchell-t1d": { | |
| "canonical_anchor_rate": 0.995623, | |
| "diseases": { | |
| "Healthy/Background": 25, | |
| "T1D": 171 | |
| }, | |
| "empty_duplicate_count": 0, | |
| "junction_fill_rate": 0.999998, | |
| "junction_filled": 26297995, | |
| "junction_methods": { | |
| "adaptive_window": 26297925, | |
| "sequence_search": 70 | |
| }, | |
| "junction_rejections": { | |
| "length": 42 | |
| }, | |
| "metadata_columns": [ | |
| "filename", | |
| "subject_id", | |
| "identifier", | |
| "participant_label", | |
| "disease", | |
| "fold", | |
| "age", | |
| "sex" | |
| ], | |
| "repertoires": 196, | |
| "rows": 26298037, | |
| "truncated": false | |
| }, | |
| "ra": { | |
| "canonical_anchor_rate": 0.992824, | |
| "diseases": { | |
| "Healthy": 20, | |
| "Rheumatoid Arthritis": 71 | |
| }, | |
| "empty_duplicate_count": 0, | |
| "junction_fill_rate": 0.999997, | |
| "junction_filled": 1079490, | |
| "junction_methods": { | |
| "adaptive_window": 1079485, | |
| "sequence_search": 5 | |
| }, | |
| "junction_rejections": { | |
| "length": 3 | |
| }, | |
| "metadata_columns": [ | |
| "filename", | |
| "subject_id", | |
| "identifier", | |
| "participant_label", | |
| "disease", | |
| "fold" | |
| ], | |
| "repertoires": 91, | |
| "rows": 1079493, | |
| "truncated": false | |
| }, | |
| "rawat-t1d": { | |
| "canonical_anchor_rate": 0.995037, | |
| "diseases": { | |
| "Healthy/Background": 188, | |
| "T1D": 426 | |
| }, | |
| "empty_duplicate_count": 0, | |
| "junction_fill_rate": 0.999994, | |
| "junction_filled": 55538313, | |
| "junction_methods": { | |
| "sequence_search": 55538313 | |
| }, | |
| "junction_rejections": { | |
| "ambiguous": 341 | |
| }, | |
| "metadata_columns": [ | |
| "filename", | |
| "subject_id", | |
| "identifier", | |
| "participant_label", | |
| "disease", | |
| "fold", | |
| "age", | |
| "sex" | |
| ], | |
| "repertoires": 614, | |
| "rows": 55538654, | |
| "truncated": false | |
| }, | |
| "tb": { | |
| "canonical_anchor_rate": 0.993356, | |
| "diseases": { | |
| "Controller": 77, | |
| "Progressor": 63 | |
| }, | |
| "empty_duplicate_count": 0, | |
| "junction_fill_rate": 0.999998, | |
| "junction_filled": 13963294, | |
| "junction_methods": { | |
| "adaptive_window": 13963250, | |
| "sequence_search": 44 | |
| }, | |
| "junction_rejections": { | |
| "length": 21 | |
| }, | |
| "metadata_columns": [ | |
| "filename", | |
| "subject_id", | |
| "identifier", | |
| "participant_label", | |
| "disease", | |
| "fold" | |
| ], | |
| "repertoires": 140, | |
| "rows": 13963315, | |
| "truncated": false | |
| } | |
| }, | |
| "source": { | |
| "repo_id": "lordim/BenchRep-T" | |
| } | |
| } | |