Add authors and NeurIPS 2026 citation; replace review-era anonymized text
Browse filesFills the dataset card citation, croissant creator/citeAs, and DATASHEET creator and public code/data locations.
- DATASHEET.md +3 -3
- README.md +16 -2
- croissant.json +24 -5
DATASHEET.md
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@@ -14,7 +14,7 @@ BenchRep-T was created to provide a fixed, reproducible benchmark for comparing
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**Who created the dataset and on behalf of which entity?**
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**Who funded the creation of the dataset?**
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**Is the preprocessing software available?**
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Yes. Cleaning scripts, cohort adapters, fixed-fold metadata, and per-method environments are provided in the
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---
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**How is the dataset distributed?**
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Before public release, the authors should publish a manifest that identifies, for each file, its source, checksum, applicable source terms, redistribution status, and preprocessing version. Croissant metadata should be claimed only after a Croissant record is actually included in the release.
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**Who created the dataset and on behalf of which entity?**
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BenchRep-T was created by Alejandro Buendia\*, Chiho Im\*, Anshul Kundaje, Scott D Boyd, and Liel Cohen-Lavi (\* co-first authors) for the NeurIPS 2026 Evaluations and Datasets Track paper "BenchRep-T: A Systematic Evaluation of T-Cell Repertoire-Based Disease Diagnostics."
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**Who funded the creation of the dataset?**
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**Is the preprocessing software available?**
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Yes. Cleaning scripts, cohort adapters, fixed-fold metadata, and per-method environments are provided in the public code repository at https://github.com/boyd-lab/BenchRep-T.
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---
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**How is the dataset distributed?**
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The cleaned repertoires, per-cohort metadata with fixed fold assignments, and auxiliary task files are distributed through the Hugging Face Hub at https://huggingface.co/datasets/lordim/BenchRep-T. Code is available at https://github.com/boyd-lab/BenchRep-T. Raw source data remain at Synapse or immuneACCESS.
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Before public release, the authors should publish a manifest that identifies, for each file, its source, checksum, applicable source terms, redistribution status, and preprocessing version. Croissant metadata should be claimed only after a Croissant record is actually included in the release.
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README.md
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## Citation
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## Citation
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BenchRep-T is described in the following paper, to appear in the **NeurIPS 2026 Evaluations and Datasets Track**:
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> Alejandro Buendia\*, Chiho Im\*, Anshul Kundaje, Scott D Boyd, and Liel Cohen-Lavi. "BenchRep-T: A Systematic Evaluation of T-Cell Repertoire-Based Disease Diagnostics." *Advances in Neural Information Processing Systems (NeurIPS), Evaluations and Datasets Track*, 2026.
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>
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> \* Equal contribution (co-first authors).
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```bibtex
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@inproceedings{buendia2026benchrep,
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title = {BenchRep-T: A Systematic Evaluation of T-Cell Repertoire-Based Disease Diagnostics},
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author = {Buendia, Alejandro and Im, Chiho and Kundaje, Anshul and Boyd, Scott D and Cohen-Lavi, Liel},
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booktitle = {Advances in Neural Information Processing Systems, Evaluations and Datasets Track},
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year = {2026}
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}
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```
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Code: [github.com/boyd-lab/BenchRep-T](https://github.com/boyd-lab/BenchRep-T). A preprint is available on [bioRxiv](https://www.biorxiv.org/content/10.64898/2026.06.09.727013v1.abstract).
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croissant.json
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"lordim/BenchRep-T",
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"BenchRep-T"
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],
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"creator":
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"keywords": [
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"mit",
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"1K<n<10K",
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"dataSocialImpact": "Repertoire-based classifiers could support non-invasive diagnostics, but deploying models that underperform on underrepresented demographic groups risks inequitable outcomes; this dataset is intended for research benchmarking only.",
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"personalSensitiveInformation": "Data consist of de-identified human immune-repertoire sequences plus a limited set of demographic and clinical fields (e.g., age, sex, ancestry/race, and HLA typing or autoantibody status for some cohorts). No direct identifiers are included. Note that immune-repertoire and HLA data can in principle be re-identifying; use in accordance with the data-use terms of the original source studies.",
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"dataReleaseMaintenancePlan": "Released as a static benchmark snapshot under the MIT License via the Hugging Face Hub; any updates are tracked through the repository commit history."
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}
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"lordim/BenchRep-T",
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"BenchRep-T"
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],
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"creator": [
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{
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"@type": "Person",
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"name": "Alejandro Buendia"
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},
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{
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"@type": "Person",
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"name": "Chiho Im"
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},
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{
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"@type": "Person",
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"name": "Anshul Kundaje"
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},
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{
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"@type": "Person",
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"name": "Scott D Boyd"
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},
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{
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"@type": "Person",
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"name": "Liel Cohen-Lavi"
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}
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],
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"citeAs": "@inproceedings{buendia2026benchrep,\n title = {BenchRep-T: A Systematic Evaluation of T-Cell Repertoire-Based Disease Diagnostics},\n author = {Buendia, Alejandro and Im, Chiho and Kundaje, Anshul and Boyd, Scott D and Cohen-Lavi, Liel},\n booktitle = {Advances in Neural Information Processing Systems, Evaluations and Datasets Track},\n year = {2026}\n}",
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"keywords": [
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"mit",
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"1K<n<10K",
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"dataSocialImpact": "Repertoire-based classifiers could support non-invasive diagnostics, but deploying models that underperform on underrepresented demographic groups risks inequitable outcomes; this dataset is intended for research benchmarking only.",
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"personalSensitiveInformation": "Data consist of de-identified human immune-repertoire sequences plus a limited set of demographic and clinical fields (e.g., age, sex, ancestry/race, and HLA typing or autoantibody status for some cohorts). No direct identifiers are included. Note that immune-repertoire and HLA data can in principle be re-identifying; use in accordance with the data-use terms of the original source studies.",
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"dataReleaseMaintenancePlan": "Released as a static benchmark snapshot under the MIT License via the Hugging Face Hub; any updates are tracked through the repository commit history."
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}
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