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| import functools as _functools | |
| import numpy as _numpy | |
| import platform as _platform | |
| import cupy as _cupy | |
| from cupy_backends.cuda.api import driver as _driver | |
| from cupy_backends.cuda.api import runtime as _runtime | |
| from cupy_backends.cuda.libs import cusparse as _cusparse | |
| from cupy._core import _dtype | |
| from cupy.cuda import device as _device | |
| from cupy.cuda import stream as _stream | |
| from cupy import _util | |
| import cupyx.scipy.sparse | |
| class MatDescriptor(object): | |
| def __init__(self, descriptor): | |
| self.descriptor = descriptor | |
| def create(cls): | |
| descr = _cusparse.createMatDescr() | |
| return MatDescriptor(descr) | |
| def __reduce__(self): | |
| return self.create, () | |
| def __del__(self, is_shutting_down=_util.is_shutting_down): | |
| if is_shutting_down(): | |
| return | |
| if self.descriptor: | |
| _cusparse.destroyMatDescr(self.descriptor) | |
| self.descriptor = None | |
| def set_mat_type(self, typ): | |
| _cusparse.setMatType(self.descriptor, typ) | |
| def set_mat_index_base(self, base): | |
| _cusparse.setMatIndexBase(self.descriptor, base) | |
| def set_mat_fill_mode(self, fill_mode): | |
| _cusparse.setMatFillMode(self.descriptor, fill_mode) | |
| def set_mat_diag_type(self, diag_type): | |
| _cusparse.setMatDiagType(self.descriptor, diag_type) | |
| def _cast_common_type(*xs): | |
| dtypes = [x.dtype for x in xs if x is not None] | |
| dtype = _functools.reduce(_numpy.promote_types, dtypes) | |
| return [x.astype(dtype) if x is not None and x.dtype != dtype else x | |
| for x in xs] | |
| def _transpose_flag(trans): | |
| if trans: | |
| return _cusparse.CUSPARSE_OPERATION_TRANSPOSE | |
| else: | |
| return _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE | |
| def _call_cusparse(name, dtype, *args): | |
| if dtype == 'f': | |
| prefix = 's' | |
| elif dtype == 'd': | |
| prefix = 'd' | |
| elif dtype == 'F': | |
| prefix = 'c' | |
| elif dtype == 'D': | |
| prefix = 'z' | |
| else: | |
| raise TypeError | |
| f = getattr(_cusparse, prefix + name) | |
| return f(*args) | |
| _available_cusparse_version = { | |
| 'csrmv': (8000, 11000), | |
| 'csrmvEx': (8000, 11000), # TODO(anaruse): failure in cuSparse 11.0 | |
| 'csrmm': (8000, 11000), | |
| 'csrmm2': (8000, 11000), | |
| 'csrgeam': (8000, 11000), | |
| 'csrgeam2': (9020, None), | |
| 'csrgemm': (8000, 11000), | |
| 'csrgemm2': (8000, 12000), | |
| 'gthr': (8000, 12000), | |
| # Generic APIs are not available on CUDA 10.2 on Windows. | |
| 'spmv': ({'Linux': 10200, 'Windows': 11000}, None), | |
| # accuracy bugs in cuSparse 10.3.0 | |
| 'spmm': ({'Linux': 10301, 'Windows': 11000}, None), | |
| 'csr2dense': (8000, 12000), | |
| 'csc2dense': (8000, 12000), | |
| 'csrsort': (8000, None), | |
| 'cscsort': (8000, None), | |
| 'coosort': (8000, None), | |
| 'coo2csr': (8000, None), | |
| 'csr2coo': (8000, None), | |
| 'csr2csc': (8000, 11000), | |
| 'csc2csr': (8000, 11000), # the entity is csr2csc | |
| 'csr2cscEx2': (10200, None), | |
| 'csc2csrEx2': (10200, None), # the entity is csr2cscEx2 | |
| 'dense2csc': (8000, None), | |
| 'dense2csr': (8000, None), | |
| 'csr2csr_compress': (8000, None), | |
| 'csrsm2': (9020, 12000), | |
| 'csrilu02': (8000, None), | |
| 'denseToSparse': (11300, None), | |
| 'sparseToDense': (11300, None), | |
| 'spgemm': (11100, None), | |
| 'spsm': (11600, None), # CUDA 11.3.1 | |
| } | |
| _available_hipsparse_version = { | |
| # For APIs supported by CUDA but not yet by HIP, we still need them here | |
| # so that our test suite can cover both platforms. | |
| 'csrmv': (305, None), | |
| 'csrmvEx': (_numpy.inf, None), | |
| 'csrmm': (305, None), | |
| 'csrmm2': (305, None), | |
| 'csrgeam': (305, None), | |
| 'csrgeam2': (305, None), | |
| 'csrgemm': (305, None), | |
| 'csrgemm2': (305, None), | |
| 'gthr': (305, None), | |
| 'spmv': (402, None), | |
| 'spmm': (402, None), | |
| 'csr2dense': (305, None), | |
| 'csc2dense': (305, None), | |
| 'csrsort': (305, None), | |
| 'cscsort': (305, None), | |
| 'coosort': (305, None), | |
| 'coo2csr': (305, None), | |
| 'csr2coo': (305, None), | |
| 'csr2csc': (305, None), | |
| 'csc2csr': (305, None), # the entity is csr2csc | |
| 'csr2cscEx2': (_numpy.inf, None), | |
| 'csc2csrEx2': (_numpy.inf, None), # the entity is csr2cscEx2 | |
| 'dense2csc': (305, None), | |
| 'dense2csr': (305, None), | |
| 'csr2csr_compress': (305, None), | |
| 'csrsm2': (305, None), # available since 305 but seems buggy | |
| 'csrilu02': (305, None), | |
| 'denseToSparse': (402, None), | |
| 'sparseToDense': (402, None), | |
| 'spgemm': (_numpy.inf, None), | |
| 'spsm': (50000000, None), | |
| } | |
| def _get_avail_version_from_spec(x): | |
| if isinstance(x, dict): | |
| os_name = _platform.system() | |
| if os_name not in x: | |
| msg = 'No version information specified for the OS: {}'.format( | |
| os_name) | |
| raise ValueError(msg) | |
| return x[os_name] | |
| return x | |
| def check_availability(name): | |
| if not _runtime.is_hip: | |
| available_version = _available_cusparse_version | |
| version = _cusparse.get_build_version() | |
| else: | |
| available_version = _available_hipsparse_version | |
| version = _driver.get_build_version() # = HIP_VERSION | |
| if name not in available_version: | |
| msg = 'No available version information specified for {}'.format(name) | |
| raise ValueError(msg) | |
| version_added, version_removed = available_version[name] | |
| version_added = _get_avail_version_from_spec(version_added) | |
| version_removed = _get_avail_version_from_spec(version_removed) | |
| if version_added is not None and version < version_added: | |
| return False | |
| if version_removed is not None and version >= version_removed: | |
| return False | |
| return True | |
| def getVersion() -> int: | |
| return _cusparse.getVersion(_device.get_cusparse_handle()) | |
| def csrmv(a, x, y=None, alpha=1, beta=0, transa=False): | |
| """Matrix-vector product for a CSR-matrix and a dense vector. | |
| .. math:: | |
| y = \\alpha * o_a(A) x + \\beta y, | |
| where :math:`o_a` is a transpose function when ``transa`` is ``True`` and | |
| is an identity function otherwise. | |
| Args: | |
| a (cupyx.cusparse.csr_matrix): Matrix A. | |
| x (cupy.ndarray): Vector x. | |
| y (cupy.ndarray or None): Vector y. It must be F-contiguous. | |
| alpha (float): Coefficient for x. | |
| beta (float): Coefficient for y. | |
| transa (bool): If ``True``, transpose of ``A`` is used. | |
| Returns: | |
| cupy.ndarray: Calculated ``y``. | |
| """ | |
| if not check_availability('csrmv'): | |
| raise RuntimeError('csrmv is not available.') | |
| assert y is None or y.flags.f_contiguous | |
| a_shape = a.shape if not transa else a.shape[::-1] | |
| if a_shape[1] != len(x): | |
| raise ValueError('dimension mismatch') | |
| handle = _device.get_cusparse_handle() | |
| m, n = a_shape | |
| a, x, y = _cast_common_type(a, x, y) | |
| dtype = a.dtype | |
| if y is None: | |
| y = _cupy.zeros(m, dtype) | |
| alpha = _numpy.array(alpha, dtype).ctypes | |
| beta = _numpy.array(beta, dtype).ctypes | |
| _call_cusparse( | |
| 'csrmv', dtype, | |
| handle, _transpose_flag(transa), | |
| a.shape[0], a.shape[1], a.nnz, alpha.data, a._descr.descriptor, | |
| a.data.data.ptr, a.indptr.data.ptr, a.indices.data.ptr, | |
| x.data.ptr, beta.data, y.data.ptr) | |
| return y | |
| def csrmvExIsAligned(a, x, y=None): | |
| """Check if the pointers of arguments for csrmvEx are aligned or not | |
| Args: | |
| a (cupyx.cusparse.csr_matrix): Matrix A. | |
| x (cupy.ndarray): Vector x. | |
| y (cupy.ndarray or None): Vector y. | |
| Check if a, x, y pointers are aligned by 128 bytes as | |
| required by csrmvEx. | |
| Returns: | |
| bool: | |
| ``True`` if all pointers are aligned. | |
| ``False`` if otherwise. | |
| """ | |
| if a.data.data.ptr % 128 != 0: | |
| return False | |
| if a.indptr.data.ptr % 128 != 0: | |
| return False | |
| if a.indices.data.ptr % 128 != 0: | |
| return False | |
| if x.data.ptr % 128 != 0: | |
| return False | |
| if y is not None and y.data.ptr % 128 != 0: | |
| return False | |
| return True | |
| def csrmvEx(a, x, y=None, alpha=1, beta=0, merge_path=True): | |
| """Matrix-vector product for a CSR-matrix and a dense vector. | |
| .. math:: | |
| y = \\alpha * A x + \\beta y, | |
| Args: | |
| a (cupyx.cusparse.csr_matrix): Matrix A. | |
| x (cupy.ndarray): Vector x. | |
| y (cupy.ndarray or None): Vector y. It must be F-contiguous. | |
| alpha (float): Coefficient for x. | |
| beta (float): Coefficient for y. | |
| merge_path (bool): If ``True``, merge path algorithm is used. | |
| All pointers must be aligned with 128 bytes. | |
| Returns: | |
| cupy.ndarray: Calculated ``y``. | |
| """ | |
| if not check_availability('csrmvEx'): | |
| raise RuntimeError('csrmvEx is not available.') | |
| assert y is None or y.flags.f_contiguous | |
| if a.shape[1] != len(x): | |
| raise ValueError('dimension mismatch') | |
| handle = _device.get_cusparse_handle() | |
| m, n = a.shape | |
| a, x, y = _cast_common_type(a, x, y) | |
| dtype = a.dtype | |
| if y is None: | |
| y = _cupy.zeros(m, dtype) | |
| datatype = _dtype.to_cuda_dtype(dtype) | |
| algmode = _cusparse.CUSPARSE_ALG_MERGE_PATH if \ | |
| merge_path else _cusparse.CUSPARSE_ALG_NAIVE | |
| transa_flag = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE | |
| alpha = _numpy.array(alpha, dtype).ctypes | |
| beta = _numpy.array(beta, dtype).ctypes | |
| assert csrmvExIsAligned(a, x, y) | |
| bufferSize = _cusparse.csrmvEx_bufferSize( | |
| handle, algmode, transa_flag, | |
| a.shape[0], a.shape[1], a.nnz, alpha.data, datatype, | |
| a._descr.descriptor, a.data.data.ptr, datatype, | |
| a.indptr.data.ptr, a.indices.data.ptr, | |
| x.data.ptr, datatype, beta.data, datatype, | |
| y.data.ptr, datatype, datatype) | |
| buf = _cupy.empty(bufferSize, 'b') | |
| assert buf.data.ptr % 128 == 0 | |
| _cusparse.csrmvEx( | |
| handle, algmode, transa_flag, | |
| a.shape[0], a.shape[1], a.nnz, alpha.data, datatype, | |
| a._descr.descriptor, a.data.data.ptr, datatype, | |
| a.indptr.data.ptr, a.indices.data.ptr, | |
| x.data.ptr, datatype, beta.data, datatype, | |
| y.data.ptr, datatype, datatype, buf.data.ptr) | |
| return y | |
| def csrmm(a, b, c=None, alpha=1, beta=0, transa=False): | |
| """Matrix-matrix product for a CSR-matrix and a dense matrix. | |
| .. math:: | |
| C = \\alpha o_a(A) B + \\beta C, | |
| where :math:`o_a` is a transpose function when ``transa`` is ``True`` and | |
| is an identity function otherwise. | |
| Args: | |
| a (cupyx.scipy.sparse.csr): Sparse matrix A. | |
| b (cupy.ndarray): Dense matrix B. It must be F-contiguous. | |
| c (cupy.ndarray or None): Dense matrix C. It must be F-contiguous. | |
| alpha (float): Coefficient for AB. | |
| beta (float): Coefficient for C. | |
| transa (bool): If ``True``, transpose of A is used. | |
| Returns: | |
| cupy.ndarray: Calculated C. | |
| """ | |
| if not check_availability('csrmm'): | |
| raise RuntimeError('csrmm is not available.') | |
| assert a.ndim == b.ndim == 2 | |
| assert b.flags.f_contiguous | |
| assert c is None or c.flags.f_contiguous | |
| a_shape = a.shape if not transa else a.shape[::-1] | |
| if a_shape[1] != b.shape[0]: | |
| raise ValueError('dimension mismatch') | |
| handle = _device.get_cusparse_handle() | |
| m, k = a_shape | |
| n = b.shape[1] | |
| a, b, c = _cast_common_type(a, b, c) | |
| if c is None: | |
| c = _cupy.zeros((m, n), a.dtype, 'F') | |
| ldb = k | |
| ldc = m | |
| alpha = _numpy.array(alpha, a.dtype).ctypes | |
| beta = _numpy.array(beta, a.dtype).ctypes | |
| _call_cusparse( | |
| 'csrmm', a.dtype, | |
| handle, _transpose_flag(transa), | |
| a.shape[0], n, a.shape[1], a.nnz, | |
| alpha.data, a._descr.descriptor, a.data.data.ptr, | |
| a.indptr.data.ptr, a.indices.data.ptr, | |
| b.data.ptr, ldb, beta.data, c.data.ptr, ldc) | |
| return c | |
| def csrmm2(a, b, c=None, alpha=1.0, beta=0.0, transa=False, transb=False): | |
| """Matrix-matrix product for a CSR-matrix and a dense matrix. | |
| .. math:: | |
| C = \\alpha o_a(A) o_b(B) + \\beta C, | |
| where :math:`o_a` and :math:`o_b` are transpose functions when ``transa`` | |
| and ``tranb`` are ``True`` respectively. And they are identity functions | |
| otherwise. | |
| It is forbidden that both ``transa`` and ``transb`` are ``True`` in | |
| cuSPARSE specification. | |
| Args: | |
| a (cupyx.scipy.sparse.csr): Sparse matrix A. | |
| b (cupy.ndarray): Dense matrix B. It must be F-contiguous. | |
| c (cupy.ndarray or None): Dense matrix C. It must be F-contiguous. | |
| alpha (float): Coefficient for AB. | |
| beta (float): Coefficient for C. | |
| transa (bool): If ``True``, transpose of A is used. | |
| transb (bool): If ``True``, transpose of B is used. | |
| Returns: | |
| cupy.ndarray: Calculated C. | |
| """ | |
| if not check_availability('csrmm2'): | |
| raise RuntimeError('csrmm2 is not available.') | |
| assert a.ndim == b.ndim == 2 | |
| assert a.has_canonical_format | |
| assert b.flags.f_contiguous | |
| assert c is None or c.flags.f_contiguous | |
| assert not (transa and transb) | |
| a_shape = a.shape if not transa else a.shape[::-1] | |
| b_shape = b.shape if not transb else b.shape[::-1] | |
| if a_shape[1] != b_shape[0]: | |
| raise ValueError('dimension mismatch') | |
| handle = _device.get_cusparse_handle() | |
| m, k = a_shape | |
| n = b_shape[1] | |
| a, b, c = _cast_common_type(a, b, c) | |
| if c is None: | |
| c = _cupy.zeros((m, n), a.dtype, 'F') | |
| ldb = b.shape[0] | |
| ldc = c.shape[0] | |
| op_a = _transpose_flag(transa) | |
| op_b = _transpose_flag(transb) | |
| alpha = _numpy.array(alpha, a.dtype).ctypes | |
| beta = _numpy.array(beta, a.dtype).ctypes | |
| _call_cusparse( | |
| 'csrmm2', a.dtype, | |
| handle, op_a, op_b, a.shape[0], n, a.shape[1], a.nnz, | |
| alpha.data, a._descr.descriptor, a.data.data.ptr, | |
| a.indptr.data.ptr, a.indices.data.ptr, | |
| b.data.ptr, ldb, beta.data, c.data.ptr, ldc) | |
| return c | |
| def csrgeam(a, b, alpha=1, beta=1): | |
| """Matrix-matrix addition. | |
| .. math:: | |
| C = \\alpha A + \\beta B | |
| Args: | |
| a (cupyx.scipy.sparse.csr_matrix): Sparse matrix A. | |
| b (cupyx.scipy.sparse.csr_matrix): Sparse matrix B. | |
| alpha (float): Coefficient for A. | |
| beta (float): Coefficient for B. | |
| Returns: | |
| cupyx.scipy.sparse.csr_matrix: Result matrix. | |
| """ | |
| if not check_availability('csrgeam'): | |
| raise RuntimeError('csrgeam is not available.') | |
| if not isinstance(a, cupyx.scipy.sparse.csr_matrix): | |
| raise TypeError('unsupported type (actual: {})'.format(type(a))) | |
| if not isinstance(b, cupyx.scipy.sparse.csr_matrix): | |
| raise TypeError('unsupported type (actual: {})'.format(type(b))) | |
| assert a.has_canonical_format | |
| assert b.has_canonical_format | |
| if a.shape != b.shape: | |
| raise ValueError('inconsistent shapes') | |
| handle = _device.get_cusparse_handle() | |
| m, n = a.shape | |
| a, b = _cast_common_type(a, b) | |
| nnz = _numpy.empty((), 'i') | |
| _cusparse.setPointerMode( | |
| handle, _cusparse.CUSPARSE_POINTER_MODE_HOST) | |
| c_descr = MatDescriptor.create() | |
| c_indptr = _cupy.empty(m + 1, 'i') | |
| _cusparse.xcsrgeamNnz( | |
| handle, m, n, | |
| a._descr.descriptor, a.nnz, a.indptr.data.ptr, a.indices.data.ptr, | |
| b._descr.descriptor, b.nnz, b.indptr.data.ptr, b.indices.data.ptr, | |
| c_descr.descriptor, c_indptr.data.ptr, nnz.ctypes.data) | |
| c_indices = _cupy.empty(int(nnz), 'i') | |
| c_data = _cupy.empty(int(nnz), a.dtype) | |
| alpha = _numpy.array(alpha, a.dtype).ctypes | |
| beta = _numpy.array(beta, a.dtype).ctypes | |
| _call_cusparse( | |
| 'csrgeam', a.dtype, | |
| handle, m, n, alpha.data, | |
| a._descr.descriptor, a.nnz, a.data.data.ptr, | |
| a.indptr.data.ptr, a.indices.data.ptr, beta.data, | |
| b._descr.descriptor, b.nnz, b.data.data.ptr, | |
| b.indptr.data.ptr, b.indices.data.ptr, | |
| c_descr.descriptor, c_data.data.ptr, c_indptr.data.ptr, | |
| c_indices.data.ptr) | |
| c = cupyx.scipy.sparse.csr_matrix( | |
| (c_data, c_indices, c_indptr), shape=a.shape) | |
| c._has_canonical_format = True | |
| return c | |
| def csrgeam2(a, b, alpha=1, beta=1): | |
| """Matrix-matrix addition. | |
| .. math:: | |
| C = \\alpha A + \\beta B | |
| Args: | |
| a (cupyx.scipy.sparse.csr_matrix): Sparse matrix A. | |
| b (cupyx.scipy.sparse.csr_matrix): Sparse matrix B. | |
| alpha (float): Coefficient for A. | |
| beta (float): Coefficient for B. | |
| Returns: | |
| cupyx.scipy.sparse.csr_matrix: Result matrix. | |
| """ | |
| if not check_availability('csrgeam2'): | |
| raise RuntimeError('csrgeam2 is not available.') | |
| if not isinstance(a, cupyx.scipy.sparse.csr_matrix): | |
| raise TypeError('unsupported type (actual: {})'.format(type(a))) | |
| if not isinstance(b, cupyx.scipy.sparse.csr_matrix): | |
| raise TypeError('unsupported type (actual: {})'.format(type(b))) | |
| assert a.has_canonical_format | |
| assert b.has_canonical_format | |
| if a.shape != b.shape: | |
| raise ValueError('inconsistent shapes') | |
| handle = _device.get_cusparse_handle() | |
| m, n = a.shape | |
| a, b = _cast_common_type(a, b) | |
| nnz = _numpy.empty((), 'i') | |
| _cusparse.setPointerMode( | |
| handle, _cusparse.CUSPARSE_POINTER_MODE_HOST) | |
| alpha = _numpy.array(alpha, a.dtype).ctypes | |
| beta = _numpy.array(beta, a.dtype).ctypes | |
| c_descr = MatDescriptor.create() | |
| c_indptr = _cupy.empty(m + 1, 'i') | |
| null_ptr = 0 | |
| buff_size = _call_cusparse( | |
| 'csrgeam2_bufferSizeExt', a.dtype, | |
| handle, m, n, alpha.data, a._descr.descriptor, a.nnz, a.data.data.ptr, | |
| a.indptr.data.ptr, a.indices.data.ptr, beta.data, b._descr.descriptor, | |
| b.nnz, b.data.data.ptr, b.indptr.data.ptr, b.indices.data.ptr, | |
| c_descr.descriptor, null_ptr, c_indptr.data.ptr, null_ptr) | |
| buff = _cupy.empty(buff_size, _numpy.int8) | |
| _cusparse.xcsrgeam2Nnz( | |
| handle, m, n, a._descr.descriptor, a.nnz, a.indptr.data.ptr, | |
| a.indices.data.ptr, b._descr.descriptor, b.nnz, b.indptr.data.ptr, | |
| b.indices.data.ptr, c_descr.descriptor, c_indptr.data.ptr, | |
| nnz.ctypes.data, buff.data.ptr) | |
| c_indices = _cupy.empty(int(nnz), 'i') | |
| c_data = _cupy.empty(int(nnz), a.dtype) | |
| _call_cusparse( | |
| 'csrgeam2', a.dtype, | |
| handle, m, n, alpha.data, a._descr.descriptor, a.nnz, a.data.data.ptr, | |
| a.indptr.data.ptr, a.indices.data.ptr, beta.data, b._descr.descriptor, | |
| b.nnz, b.data.data.ptr, b.indptr.data.ptr, b.indices.data.ptr, | |
| c_descr.descriptor, c_data.data.ptr, c_indptr.data.ptr, | |
| c_indices.data.ptr, buff.data.ptr) | |
| c = cupyx.scipy.sparse.csr_matrix( | |
| (c_data, c_indices, c_indptr), shape=a.shape) | |
| c._has_canonical_format = True | |
| return c | |
| def csrgemm(a, b, transa=False, transb=False): | |
| """Matrix-matrix product for CSR-matrix. | |
| math:: | |
| C = op(A) op(B), | |
| Args: | |
| a (cupyx.scipy.sparse.csr_matrix): Sparse matrix A. | |
| b (cupyx.scipy.sparse.csr_matrix): Sparse matrix B. | |
| transa (bool): If ``True``, transpose of A is used. | |
| transb (bool): If ``True``, transpose of B is used. | |
| Returns: | |
| cupyx.scipy.sparse.csr_matrix: Calculated C. | |
| """ | |
| if not check_availability('csrgemm'): | |
| raise RuntimeError('csrgemm is not available.') | |
| assert a.ndim == b.ndim == 2 | |
| assert a.has_canonical_format | |
| assert b.has_canonical_format | |
| a_shape = a.shape if not transa else a.shape[::-1] | |
| b_shape = b.shape if not transb else b.shape[::-1] | |
| if a_shape[1] != b_shape[0]: | |
| raise ValueError('dimension mismatch') | |
| handle = _device.get_cusparse_handle() | |
| m, k = a_shape | |
| n = b_shape[1] | |
| a, b = _cast_common_type(a, b) | |
| if a.nnz == 0 or b.nnz == 0: | |
| return cupyx.scipy.sparse.csr_matrix((m, n), dtype=a.dtype) | |
| op_a = _transpose_flag(transa) | |
| op_b = _transpose_flag(transb) | |
| nnz = _numpy.empty((), 'i') | |
| _cusparse.setPointerMode( | |
| handle, _cusparse.CUSPARSE_POINTER_MODE_HOST) | |
| c_descr = MatDescriptor.create() | |
| c_indptr = _cupy.empty(m + 1, 'i') | |
| _cusparse.xcsrgemmNnz( | |
| handle, op_a, op_b, m, n, k, a._descr.descriptor, a.nnz, | |
| a.indptr.data.ptr, a.indices.data.ptr, b._descr.descriptor, b.nnz, | |
| b.indptr.data.ptr, b.indices.data.ptr, c_descr.descriptor, | |
| c_indptr.data.ptr, nnz.ctypes.data) | |
| c_indices = _cupy.empty(int(nnz), 'i') | |
| c_data = _cupy.empty(int(nnz), a.dtype) | |
| _call_cusparse( | |
| 'csrgemm', a.dtype, | |
| handle, op_a, op_b, m, n, k, a._descr.descriptor, a.nnz, | |
| a.data.data.ptr, a.indptr.data.ptr, a.indices.data.ptr, | |
| b._descr.descriptor, b.nnz, b.data.data.ptr, b.indptr.data.ptr, | |
| b.indices.data.ptr, | |
| c_descr.descriptor, c_data.data.ptr, c_indptr.data.ptr, | |
| c_indices.data.ptr) | |
| c = cupyx.scipy.sparse.csr_matrix( | |
| (c_data, c_indices, c_indptr), shape=(m, n)) | |
| c._has_canonical_format = True | |
| return c | |
| def csrgemm2(a, b, d=None, alpha=1, beta=1): | |
| """Matrix-matrix product for CSR-matrix. | |
| math:: | |
| C = alpha * A * B + beta * D | |
| Args: | |
| a (cupyx.scipy.sparse.csr_matrix): Sparse matrix A. | |
| b (cupyx.scipy.sparse.csr_matrix): Sparse matrix B. | |
| d (cupyx.scipy.sparse.csr_matrix or None): Sparse matrix D. | |
| alpha (scalar): Coefficient | |
| beta (scalar): Coefficient | |
| Returns: | |
| cupyx.scipy.sparse.csr_matrix | |
| """ | |
| if not check_availability('csrgemm2'): | |
| raise RuntimeError('csrgemm2 is not available.') | |
| assert a.ndim == b.ndim == 2 | |
| if not isinstance(a, cupyx.scipy.sparse.csr_matrix): | |
| raise TypeError('unsupported type (actual: {})'.format(type(a))) | |
| if not isinstance(b, cupyx.scipy.sparse.csr_matrix): | |
| raise TypeError('unsupported type (actual: {})'.format(type(b))) | |
| assert a.has_canonical_format | |
| assert b.has_canonical_format | |
| if a.shape[1] != b.shape[0]: | |
| raise ValueError('mismatched shape') | |
| if d is not None: | |
| assert d.ndim == 2 | |
| if not isinstance(d, cupyx.scipy.sparse.csr_matrix): | |
| raise TypeError('unsupported type (actual: {})'.format(type(d))) | |
| assert d.has_canonical_format | |
| if a.shape[0] != d.shape[0] or b.shape[1] != d.shape[1]: | |
| raise ValueError('mismatched shape') | |
| if _runtime.is_hip and _driver.get_build_version() < 402: | |
| raise RuntimeError('d != None is supported since ROCm 4.2.0') | |
| handle = _device.get_cusparse_handle() | |
| m, k = a.shape | |
| _, n = b.shape | |
| if d is None: | |
| a, b = _cast_common_type(a, b) | |
| else: | |
| a, b, d = _cast_common_type(a, b, d) | |
| info = _cusparse.createCsrgemm2Info() | |
| alpha = _numpy.array(alpha, a.dtype).ctypes | |
| null_ptr = 0 | |
| if d is None: | |
| beta_data = null_ptr | |
| d_descr = MatDescriptor.create() | |
| d_nnz = 0 | |
| d_data = null_ptr | |
| d_indptr = null_ptr | |
| d_indices = null_ptr | |
| else: | |
| beta = _numpy.array(beta, a.dtype).ctypes | |
| beta_data = beta.data | |
| d_descr = d._descr | |
| d_nnz = d.nnz | |
| d_data = d.data.data.ptr | |
| d_indptr = d.indptr.data.ptr | |
| d_indices = d.indices.data.ptr | |
| buff_size = _call_cusparse( | |
| 'csrgemm2_bufferSizeExt', a.dtype, | |
| handle, m, n, k, alpha.data, a._descr.descriptor, a.nnz, | |
| a.indptr.data.ptr, a.indices.data.ptr, b._descr.descriptor, b.nnz, | |
| b.indptr.data.ptr, b.indices.data.ptr, beta_data, d_descr.descriptor, | |
| d_nnz, d_indptr, d_indices, info) | |
| buff = _cupy.empty(buff_size, _numpy.int8) | |
| c_nnz = _numpy.empty((), 'i') | |
| _cusparse.setPointerMode(handle, _cusparse.CUSPARSE_POINTER_MODE_HOST) | |
| c_descr = MatDescriptor.create() | |
| c_indptr = _cupy.empty(m + 1, 'i') | |
| _cusparse.xcsrgemm2Nnz( | |
| handle, m, n, k, a._descr.descriptor, a.nnz, a.indptr.data.ptr, | |
| a.indices.data.ptr, b._descr.descriptor, b.nnz, b.indptr.data.ptr, | |
| b.indices.data.ptr, d_descr.descriptor, d_nnz, d_indptr, d_indices, | |
| c_descr.descriptor, c_indptr.data.ptr, c_nnz.ctypes.data, info, | |
| buff.data.ptr) | |
| c_indices = _cupy.empty(int(c_nnz), 'i') | |
| c_data = _cupy.empty(int(c_nnz), a.dtype) | |
| _call_cusparse( | |
| 'csrgemm2', a.dtype, | |
| handle, m, n, k, alpha.data, a._descr.descriptor, a.nnz, | |
| a.data.data.ptr, a.indptr.data.ptr, a.indices.data.ptr, | |
| b._descr.descriptor, b.nnz, b.data.data.ptr, b.indptr.data.ptr, | |
| b.indices.data.ptr, beta_data, d_descr.descriptor, d_nnz, d_data, | |
| d_indptr, d_indices, c_descr.descriptor, c_data.data.ptr, | |
| c_indptr.data.ptr, c_indices.data.ptr, info, buff.data.ptr) | |
| c = cupyx.scipy.sparse.csr_matrix( | |
| (c_data, c_indices, c_indptr), shape=(m, n)) | |
| c._has_canonical_format = True | |
| _cusparse.destroyCsrgemm2Info(info) | |
| return c | |
| def csr2dense(x, out=None): | |
| """Converts CSR-matrix to a dense matrix. | |
| Args: | |
| x (cupyx.scipy.sparse.csr_matrix): A sparse matrix to convert. | |
| out (cupy.ndarray or None): A dense metrix to store the result. | |
| It must be F-contiguous. | |
| Returns: | |
| cupy.ndarray: Converted result. | |
| """ | |
| if not check_availability('csr2dense'): | |
| raise RuntimeError('csr2dense is not available.') | |
| dtype = x.dtype | |
| assert dtype.char in 'fdFD' | |
| if out is None: | |
| out = _cupy.empty(x.shape, dtype=dtype, order='F') | |
| else: | |
| assert out.flags.f_contiguous | |
| handle = _device.get_cusparse_handle() | |
| _call_cusparse( | |
| 'csr2dense', x.dtype, | |
| handle, x.shape[0], x.shape[1], x._descr.descriptor, | |
| x.data.data.ptr, x.indptr.data.ptr, x.indices.data.ptr, | |
| out.data.ptr, x.shape[0]) | |
| return out | |
| def csc2dense(x, out=None): | |
| """Converts CSC-matrix to a dense matrix. | |
| Args: | |
| x (cupyx.scipy.sparse.csc_matrix): A sparse matrix to convert. | |
| out (cupy.ndarray or None): A dense metrix to store the result. | |
| It must be F-contiguous. | |
| Returns: | |
| cupy.ndarray: Converted result. | |
| """ | |
| if not check_availability('csc2dense'): | |
| raise RuntimeError('csc2dense is not available.') | |
| dtype = x.dtype | |
| assert dtype.char in 'fdFD' | |
| if out is None: | |
| out = _cupy.empty(x.shape, dtype=dtype, order='F') | |
| else: | |
| assert out.flags.f_contiguous | |
| handle = _device.get_cusparse_handle() | |
| _call_cusparse( | |
| 'csc2dense', x.dtype, | |
| handle, x.shape[0], x.shape[1], x._descr.descriptor, | |
| x.data.data.ptr, x.indices.data.ptr, x.indptr.data.ptr, | |
| out.data.ptr, x.shape[0]) | |
| return out | |
| def csrsort(x): | |
| """Sorts indices of CSR-matrix in place. | |
| Args: | |
| x (cupyx.scipy.sparse.csr_matrix): A sparse matrix to sort. | |
| """ | |
| if not check_availability('csrsort'): | |
| raise RuntimeError('csrsort is not available.') | |
| nnz = x.nnz | |
| if nnz == 0: | |
| return | |
| handle = _device.get_cusparse_handle() | |
| m, n = x.shape | |
| buffer_size = _cusparse.xcsrsort_bufferSizeExt( | |
| handle, m, n, nnz, x.indptr.data.ptr, | |
| x.indices.data.ptr) | |
| buf = _cupy.empty(buffer_size, 'b') | |
| P = _cupy.empty(nnz, 'i') | |
| data_orig = x.data.copy() | |
| _cusparse.createIdentityPermutation(handle, nnz, P.data.ptr) | |
| _cusparse.xcsrsort( | |
| handle, m, n, nnz, x._descr.descriptor, x.indptr.data.ptr, | |
| x.indices.data.ptr, P.data.ptr, buf.data.ptr) | |
| if check_availability('gthr'): | |
| _call_cusparse( | |
| 'gthr', x.dtype, | |
| handle, nnz, data_orig.data.ptr, x.data.data.ptr, | |
| P.data.ptr, _cusparse.CUSPARSE_INDEX_BASE_ZERO) | |
| else: | |
| desc_x = SpVecDescriptor.create(P, x.data) | |
| desc_y = DnVecDescriptor.create(data_orig) | |
| _cusparse.gather(handle, desc_y.desc, desc_x.desc) | |
| def cscsort(x): | |
| """Sorts indices of CSC-matrix in place. | |
| Args: | |
| x (cupyx.scipy.sparse.csc_matrix): A sparse matrix to sort. | |
| """ | |
| if not check_availability('cscsort'): | |
| raise RuntimeError('cscsort is not available.') | |
| nnz = x.nnz | |
| if nnz == 0: | |
| return | |
| handle = _device.get_cusparse_handle() | |
| m, n = x.shape | |
| buffer_size = _cusparse.xcscsort_bufferSizeExt( | |
| handle, m, n, nnz, x.indptr.data.ptr, | |
| x.indices.data.ptr) | |
| buf = _cupy.empty(buffer_size, 'b') | |
| P = _cupy.empty(nnz, 'i') | |
| data_orig = x.data.copy() | |
| _cusparse.createIdentityPermutation(handle, nnz, P.data.ptr) | |
| _cusparse.xcscsort( | |
| handle, m, n, nnz, x._descr.descriptor, x.indptr.data.ptr, | |
| x.indices.data.ptr, P.data.ptr, buf.data.ptr) | |
| if check_availability('gthr'): | |
| _call_cusparse( | |
| 'gthr', x.dtype, | |
| handle, nnz, data_orig.data.ptr, x.data.data.ptr, | |
| P.data.ptr, _cusparse.CUSPARSE_INDEX_BASE_ZERO) | |
| else: | |
| desc_x = SpVecDescriptor.create(P, x.data) | |
| desc_y = DnVecDescriptor.create(data_orig) | |
| _cusparse.gather(handle, desc_y.desc, desc_x.desc) | |
| def coosort(x, sort_by='r'): | |
| """Sorts indices of COO-matrix in place. | |
| Args: | |
| x (cupyx.scipy.sparse.coo_matrix): A sparse matrix to sort. | |
| sort_by (str): Sort the indices by row ('r', default) or column ('c'). | |
| """ | |
| if not check_availability('coosort'): | |
| raise RuntimeError('coosort is not available.') | |
| nnz = x.nnz | |
| if nnz == 0: | |
| return | |
| handle = _device.get_cusparse_handle() | |
| m, n = x.shape | |
| buffer_size = _cusparse.xcoosort_bufferSizeExt( | |
| handle, m, n, nnz, x.row.data.ptr, x.col.data.ptr) | |
| buf = _cupy.empty(buffer_size, 'b') | |
| P = _cupy.empty(nnz, 'i') | |
| data_orig = x.data.copy() | |
| _cusparse.createIdentityPermutation(handle, nnz, P.data.ptr) | |
| if sort_by == 'r': | |
| _cusparse.xcoosortByRow( | |
| handle, m, n, nnz, x.row.data.ptr, x.col.data.ptr, | |
| P.data.ptr, buf.data.ptr) | |
| elif sort_by == 'c': | |
| _cusparse.xcoosortByColumn( | |
| handle, m, n, nnz, x.row.data.ptr, x.col.data.ptr, | |
| P.data.ptr, buf.data.ptr) | |
| else: | |
| raise ValueError("sort_by must be either 'r' or 'c'") | |
| if x.dtype.char != '?': | |
| if check_availability('gthr'): | |
| _call_cusparse( | |
| 'gthr', x.dtype, | |
| handle, nnz, data_orig.data.ptr, x.data.data.ptr, | |
| P.data.ptr, _cusparse.CUSPARSE_INDEX_BASE_ZERO) | |
| else: | |
| desc_x = SpVecDescriptor.create(P, x.data) | |
| desc_y = DnVecDescriptor.create(data_orig) | |
| _cusparse.gather(handle, desc_y.desc, desc_x.desc) | |
| if sort_by == 'c': # coo is sorted by row first | |
| x._has_canonical_format = False | |
| def coo2csr(x): | |
| handle = _device.get_cusparse_handle() | |
| m = x.shape[0] | |
| nnz = x.nnz | |
| if nnz == 0: | |
| indptr = _cupy.zeros(m + 1, 'i') | |
| else: | |
| indptr = _cupy.empty(m + 1, 'i') | |
| _cusparse.xcoo2csr( | |
| handle, x.row.data.ptr, nnz, m, | |
| indptr.data.ptr, _cusparse.CUSPARSE_INDEX_BASE_ZERO) | |
| return cupyx.scipy.sparse.csr_matrix( | |
| (x.data, x.col, indptr), shape=x.shape) | |
| def coo2csc(x): | |
| handle = _device.get_cusparse_handle() | |
| n = x.shape[1] | |
| nnz = x.nnz | |
| if nnz == 0: | |
| indptr = _cupy.zeros(n + 1, 'i') | |
| else: | |
| indptr = _cupy.empty(n + 1, 'i') | |
| _cusparse.xcoo2csr( | |
| handle, x.col.data.ptr, nnz, n, | |
| indptr.data.ptr, _cusparse.CUSPARSE_INDEX_BASE_ZERO) | |
| return cupyx.scipy.sparse.csc_matrix( | |
| (x.data, x.row, indptr), shape=x.shape) | |
| def csr2coo(x, data, indices): | |
| """Converts a CSR-matrix to COO format. | |
| Args: | |
| x (cupyx.scipy.sparse.csr_matrix): A matrix to be converted. | |
| data (cupy.ndarray): A data array for converted data. | |
| indices (cupy.ndarray): An index array for converted data. | |
| Returns: | |
| cupyx.scipy.sparse.coo_matrix: A converted matrix. | |
| """ | |
| if not check_availability('csr2coo'): | |
| raise RuntimeError('csr2coo is not available.') | |
| handle = _device.get_cusparse_handle() | |
| m = x.shape[0] | |
| nnz = x.nnz | |
| row = _cupy.empty(nnz, 'i') | |
| _cusparse.xcsr2coo( | |
| handle, x.indptr.data.ptr, nnz, m, row.data.ptr, | |
| _cusparse.CUSPARSE_INDEX_BASE_ZERO) | |
| # data and indices did not need to be copied already | |
| return cupyx.scipy.sparse.coo_matrix( | |
| (data, (row, indices)), shape=x.shape) | |
| def csr2csc(x): | |
| if not check_availability('csr2csc'): | |
| raise RuntimeError('csr2csc is not available.') | |
| handle = _device.get_cusparse_handle() | |
| m, n = x.shape | |
| nnz = x.nnz | |
| data = _cupy.empty(nnz, x.dtype) | |
| indices = _cupy.empty(nnz, 'i') | |
| if nnz == 0: | |
| indptr = _cupy.zeros(n + 1, 'i') | |
| else: | |
| indptr = _cupy.empty(n + 1, 'i') | |
| _call_cusparse( | |
| 'csr2csc', x.dtype, | |
| handle, m, n, nnz, x.data.data.ptr, | |
| x.indptr.data.ptr, x.indices.data.ptr, | |
| data.data.ptr, indices.data.ptr, indptr.data.ptr, | |
| _cusparse.CUSPARSE_ACTION_NUMERIC, | |
| _cusparse.CUSPARSE_INDEX_BASE_ZERO) | |
| return cupyx.scipy.sparse.csc_matrix( | |
| (data, indices, indptr), shape=x.shape) | |
| def csr2cscEx2(x): | |
| if not check_availability('csr2cscEx2'): | |
| raise RuntimeError('csr2cscEx2 is not available.') | |
| handle = _device.get_cusparse_handle() | |
| m, n = x.shape | |
| nnz = x.nnz | |
| data = _cupy.empty(nnz, x.dtype) | |
| indices = _cupy.empty(nnz, 'i') | |
| if nnz == 0: | |
| indptr = _cupy.zeros(n + 1, 'i') | |
| else: | |
| indptr = _cupy.empty(n + 1, 'i') | |
| x_dtype = _dtype.to_cuda_dtype(x.dtype) | |
| action = _cusparse.CUSPARSE_ACTION_NUMERIC | |
| ibase = _cusparse.CUSPARSE_INDEX_BASE_ZERO | |
| algo = _cusparse.CUSPARSE_CSR2CSC_ALG1 | |
| buffer_size = _cusparse.csr2cscEx2_bufferSize( | |
| handle, m, n, nnz, x.data.data.ptr, x.indptr.data.ptr, | |
| x.indices.data.ptr, data.data.ptr, indptr.data.ptr, | |
| indices.data.ptr, x_dtype, action, ibase, algo) | |
| buffer = _cupy.empty(buffer_size, _numpy.int8) | |
| _cusparse.csr2cscEx2( | |
| handle, m, n, nnz, x.data.data.ptr, x.indptr.data.ptr, | |
| x.indices.data.ptr, data.data.ptr, indptr.data.ptr, | |
| indices.data.ptr, x_dtype, action, ibase, algo, buffer.data.ptr) | |
| return cupyx.scipy.sparse.csc_matrix( | |
| (data, indices, indptr), shape=x.shape) | |
| def csc2coo(x, data, indices): | |
| """Converts a CSC-matrix to COO format. | |
| Args: | |
| x (cupyx.scipy.sparse.csc_matrix): A matrix to be converted. | |
| data (cupy.ndarray): A data array for converted data. | |
| indices (cupy.ndarray): An index array for converted data. | |
| Returns: | |
| cupyx.scipy.sparse.coo_matrix: A converted matrix. | |
| """ | |
| handle = _device.get_cusparse_handle() | |
| n = x.shape[1] | |
| nnz = x.nnz | |
| col = _cupy.empty(nnz, 'i') | |
| _cusparse.xcsr2coo( | |
| handle, x.indptr.data.ptr, nnz, n, col.data.ptr, | |
| _cusparse.CUSPARSE_INDEX_BASE_ZERO) | |
| # data and indices did not need to be copied already | |
| return cupyx.scipy.sparse.coo_matrix( | |
| (data, (indices, col)), shape=x.shape) | |
| def csc2csr(x): | |
| if not check_availability('csc2csr'): | |
| raise RuntimeError('csr2csc is not available.') | |
| handle = _device.get_cusparse_handle() | |
| m, n = x.shape | |
| nnz = x.nnz | |
| data = _cupy.empty(nnz, x.dtype) | |
| indices = _cupy.empty(nnz, 'i') | |
| if nnz == 0: | |
| indptr = _cupy.zeros(m + 1, 'i') | |
| else: | |
| indptr = _cupy.empty(m + 1, 'i') | |
| _call_cusparse( | |
| 'csr2csc', x.dtype, | |
| handle, n, m, nnz, x.data.data.ptr, | |
| x.indptr.data.ptr, x.indices.data.ptr, | |
| data.data.ptr, indices.data.ptr, indptr.data.ptr, | |
| _cusparse.CUSPARSE_ACTION_NUMERIC, | |
| _cusparse.CUSPARSE_INDEX_BASE_ZERO) | |
| return cupyx.scipy.sparse.csr_matrix( | |
| (data, indices, indptr), shape=x.shape) | |
| def csc2csrEx2(x): | |
| if not check_availability('csc2csrEx2'): | |
| raise RuntimeError('csc2csrEx2 is not available.') | |
| handle = _device.get_cusparse_handle() | |
| m, n = x.shape | |
| nnz = x.nnz | |
| data = _cupy.empty(nnz, x.dtype) | |
| indices = _cupy.empty(nnz, 'i') | |
| if nnz == 0: | |
| indptr = _cupy.zeros(m + 1, 'i') | |
| else: | |
| indptr = _cupy.empty(m + 1, 'i') | |
| x_dtype = _dtype.to_cuda_dtype(x.dtype) | |
| action = _cusparse.CUSPARSE_ACTION_NUMERIC | |
| ibase = _cusparse.CUSPARSE_INDEX_BASE_ZERO | |
| algo = _cusparse.CUSPARSE_CSR2CSC_ALG1 | |
| buffer_size = _cusparse.csr2cscEx2_bufferSize( | |
| handle, n, m, nnz, x.data.data.ptr, x.indptr.data.ptr, | |
| x.indices.data.ptr, data.data.ptr, indptr.data.ptr, | |
| indices.data.ptr, x_dtype, action, ibase, algo) | |
| buffer = _cupy.empty(buffer_size, _numpy.int8) | |
| _cusparse.csr2cscEx2( | |
| handle, n, m, nnz, x.data.data.ptr, x.indptr.data.ptr, | |
| x.indices.data.ptr, data.data.ptr, indptr.data.ptr, | |
| indices.data.ptr, x_dtype, action, ibase, algo, buffer.data.ptr) | |
| return cupyx.scipy.sparse.csr_matrix( | |
| (data, indices, indptr), shape=x.shape) | |
| def dense2csc(x): | |
| """Converts a dense matrix in CSC format. | |
| Args: | |
| x (cupy.ndarray): A matrix to be converted. | |
| Returns: | |
| cupyx.scipy.sparse.csc_matrix: A converted matrix. | |
| """ | |
| if not check_availability('dense2csc'): | |
| raise RuntimeError('dense2csc is not available.') | |
| assert x.ndim == 2 | |
| x = _cupy.asfortranarray(x) | |
| nnz = _numpy.empty((), dtype='i') | |
| handle = _device.get_cusparse_handle() | |
| m, n = x.shape | |
| descr = MatDescriptor.create() | |
| nnz_per_col = _cupy.empty(m, 'i') | |
| _call_cusparse( | |
| 'nnz', x.dtype, | |
| handle, _cusparse.CUSPARSE_DIRECTION_COLUMN, m, n, descr.descriptor, | |
| x.data.ptr, m, nnz_per_col.data.ptr, nnz.ctypes.data) | |
| nnz = int(nnz) | |
| data = _cupy.empty(nnz, x.dtype) | |
| indptr = _cupy.empty(n + 1, 'i') | |
| indices = _cupy.empty(nnz, 'i') | |
| _call_cusparse( | |
| 'dense2csc', x.dtype, | |
| handle, m, n, descr.descriptor, | |
| x.data.ptr, m, nnz_per_col.data.ptr, | |
| data.data.ptr, indices.data.ptr, indptr.data.ptr) | |
| # Note that a descriptor is recreated | |
| csc = cupyx.scipy.sparse.csc_matrix((data, indices, indptr), shape=x.shape) | |
| csc._has_canonical_format = True | |
| return csc | |
| def dense2csr(x): | |
| """Converts a dense matrix in CSR format. | |
| Args: | |
| x (cupy.ndarray): A matrix to be converted. | |
| Returns: | |
| cupyx.scipy.sparse.csr_matrix: A converted matrix. | |
| """ | |
| if not check_availability('dense2csr'): | |
| raise RuntimeError('dense2csr is not available.') | |
| assert x.ndim == 2 | |
| x = _cupy.asfortranarray(x) | |
| nnz = _numpy.empty((), dtype='i') | |
| handle = _device.get_cusparse_handle() | |
| m, n = x.shape | |
| descr = MatDescriptor.create() | |
| nnz_per_row = _cupy.empty(m, 'i') | |
| _call_cusparse( | |
| 'nnz', x.dtype, | |
| handle, _cusparse.CUSPARSE_DIRECTION_ROW, m, n, descr.descriptor, | |
| x.data.ptr, m, nnz_per_row.data.ptr, nnz.ctypes.data) | |
| nnz = int(nnz) | |
| if _runtime.is_hip: | |
| if nnz == 0: | |
| raise ValueError('hipSPARSE currently cannot handle ' | |
| 'sparse matrices with null ptrs') | |
| data = _cupy.empty(nnz, x.dtype) | |
| indptr = _cupy.empty(m + 1, 'i') | |
| indices = _cupy.empty(nnz, 'i') | |
| _call_cusparse( | |
| 'dense2csr', x.dtype, | |
| handle, m, n, descr.descriptor, | |
| x.data.ptr, m, nnz_per_row.data.ptr, | |
| data.data.ptr, indptr.data.ptr, indices.data.ptr) | |
| # Note that a descriptor is recreated | |
| csr = cupyx.scipy.sparse.csr_matrix((data, indices, indptr), shape=x.shape) | |
| csr._has_canonical_format = True | |
| return csr | |
| def csr2csr_compress(x, tol): | |
| if not check_availability('csr2csr_compress'): | |
| raise RuntimeError('csr2csr_compress is not available.') | |
| assert x.dtype.char in 'fdFD' | |
| handle = _device.get_cusparse_handle() | |
| m, n = x.shape | |
| nnz_per_row = _cupy.empty(m, 'i') | |
| nnz = _call_cusparse( | |
| 'nnz_compress', x.dtype, | |
| handle, m, x._descr.descriptor, | |
| x.data.data.ptr, x.indptr.data.ptr, nnz_per_row.data.ptr, tol) | |
| data = _cupy.zeros(nnz, x.dtype) | |
| indptr = _cupy.empty(m + 1, 'i') | |
| indices = _cupy.zeros(nnz, 'i') | |
| _call_cusparse( | |
| 'csr2csr_compress', x.dtype, | |
| handle, m, n, x._descr.descriptor, | |
| x.data.data.ptr, x.indices.data.ptr, x.indptr.data.ptr, | |
| x.nnz, nnz_per_row.data.ptr, data.data.ptr, indices.data.ptr, | |
| indptr.data.ptr, tol) | |
| return cupyx.scipy.sparse.csr_matrix( | |
| (data, indices, indptr), shape=x.shape) | |
| def _dtype_to_IndexType(dtype): | |
| if dtype == 'uint16': | |
| return _cusparse.CUSPARSE_INDEX_16U | |
| elif dtype == 'int32': | |
| return _cusparse.CUSPARSE_INDEX_32I | |
| elif dtype == 'int64': | |
| return _cusparse.CUSPARSE_INDEX_64I | |
| else: | |
| raise TypeError | |
| class BaseDescriptor(object): | |
| def __init__(self, descriptor, get=None, destroyer=None): | |
| self.desc = descriptor | |
| self.get = get | |
| self.destroy = destroyer | |
| def __del__(self, is_shutting_down=_util.is_shutting_down): | |
| if is_shutting_down(): | |
| return | |
| if self.destroy is None: | |
| self.desc = None | |
| elif self.desc is not None: | |
| self.destroy(self.desc) | |
| self.desc = None | |
| def __getattr__(self, name): | |
| if self.get is not None: | |
| return getattr(self.get(self.desc), name) | |
| raise AttributeError | |
| class SpMatDescriptor(BaseDescriptor): | |
| def create(cls, a): | |
| assert cupyx.scipy.sparse.issparse(a) | |
| rows, cols = a.shape | |
| idx_base = _cusparse.CUSPARSE_INDEX_BASE_ZERO | |
| cuda_dtype = _dtype.to_cuda_dtype(a.dtype) | |
| if a.format == 'csr': | |
| desc = _cusparse.createCsr( | |
| rows, cols, a.nnz, a.indptr.data.ptr, a.indices.data.ptr, | |
| a.data.data.ptr, _dtype_to_IndexType(a.indptr.dtype), | |
| _dtype_to_IndexType(a.indices.dtype), idx_base, cuda_dtype) | |
| get = _cusparse.csrGet | |
| elif a.format == 'coo': | |
| desc = _cusparse.createCoo( | |
| rows, cols, a.nnz, a.row.data.ptr, a.col.data.ptr, | |
| a.data.data.ptr, _dtype_to_IndexType(a.row.dtype), | |
| idx_base, cuda_dtype) | |
| get = _cusparse.cooGet | |
| elif a.format == 'csc': | |
| desc = _cusparse.createCsc( | |
| rows, cols, a.nnz, a.indptr.data.ptr, a.indices.data.ptr, | |
| a.data.data.ptr, _dtype_to_IndexType(a.indptr.dtype), | |
| _dtype_to_IndexType(a.indices.dtype), idx_base, cuda_dtype) | |
| get = None | |
| else: | |
| raise ValueError('csr, csc and coo format are supported ' | |
| '(actual: {}).'.format(a.format)) | |
| destroy = _cusparse.destroySpMat | |
| return SpMatDescriptor(desc, get, destroy) | |
| def set_attribute(self, attribute, data): | |
| _cusparse.spMatSetAttribute(self.desc, attribute, data) | |
| class SpVecDescriptor(BaseDescriptor): | |
| def create(cls, idx, x): | |
| nnz = x.size | |
| cuda_dtype = _dtype.to_cuda_dtype(x.dtype) | |
| desc = _cusparse.createSpVec(nnz, nnz, idx.data.ptr, x.data.ptr, | |
| _dtype_to_IndexType(idx.dtype), | |
| _cusparse.CUSPARSE_INDEX_BASE_ZERO, | |
| cuda_dtype) | |
| get = _cusparse.spVecGet | |
| destroy = _cusparse.destroySpVec | |
| return SpVecDescriptor(desc, get, destroy) | |
| class DnVecDescriptor(BaseDescriptor): | |
| def create(cls, x): | |
| cuda_dtype = _dtype.to_cuda_dtype(x.dtype) | |
| desc = _cusparse.createDnVec(x.size, x.data.ptr, cuda_dtype) | |
| get = _cusparse.dnVecGet | |
| destroy = _cusparse.destroyDnVec | |
| return DnVecDescriptor(desc, get, destroy) | |
| class DnMatDescriptor(BaseDescriptor): | |
| def create(cls, a): | |
| assert a.ndim == 2 | |
| assert a.flags.f_contiguous | |
| rows, cols = a.shape | |
| ld = rows | |
| cuda_dtype = _dtype.to_cuda_dtype(a.dtype) | |
| desc = _cusparse.createDnMat(rows, cols, ld, a.data.ptr, cuda_dtype, | |
| _cusparse.CUSPARSE_ORDER_COL) | |
| get = _cusparse.dnMatGet | |
| destroy = _cusparse.destroyDnMat | |
| return DnMatDescriptor(desc, get, destroy) | |
| def spmv(a, x, y=None, alpha=1, beta=0, transa=False): | |
| """Multiplication of sparse matrix and dense vector. | |
| .. math:: | |
| y = \\alpha * op(A) x + \\beta * y | |
| Args: | |
| a (cupyx.scipy.sparse.csr_matrix, csc_matrix or coo_matrix): | |
| Sparse matrix A | |
| x (cupy.ndarray): Dense vector x | |
| y (cupy.ndarray or None): Dense vector y | |
| alpha (scalar): Coefficient | |
| beta (scalar): Coefficient | |
| transa (bool): If ``True``, op(A) = transpose of A. | |
| Returns: | |
| cupy.ndarray | |
| """ | |
| if not check_availability('spmv'): | |
| raise RuntimeError('spmv is not available.') | |
| if isinstance(a, cupyx.scipy.sparse.csc_matrix): | |
| aT = a.T | |
| if not isinstance(aT, cupyx.scipy.sparse.csr_matrix): | |
| msg = 'aT must be csr_matrix (actual: {})'.format(type(aT)) | |
| raise TypeError(msg) | |
| a = aT | |
| transa = not transa | |
| if not isinstance(a, (cupyx.scipy.sparse.csr_matrix, | |
| cupyx.scipy.sparse.coo_matrix)): | |
| raise TypeError('unsupported type (actual: {})'.format(type(a))) | |
| a_shape = a.shape if not transa else a.shape[::-1] | |
| if a_shape[1] != len(x): | |
| raise ValueError('dimension mismatch') | |
| assert a.has_canonical_format | |
| m, n = a_shape | |
| a, x, y = _cast_common_type(a, x, y) | |
| if y is None: | |
| y = _cupy.zeros(m, a.dtype) | |
| elif len(y) != m: | |
| raise ValueError('dimension mismatch') | |
| if a.nnz == 0: | |
| y.fill(0) | |
| return y | |
| desc_a = SpMatDescriptor.create(a) | |
| desc_x = DnVecDescriptor.create(x) | |
| desc_y = DnVecDescriptor.create(y) | |
| handle = _device.get_cusparse_handle() | |
| op_a = _transpose_flag(transa) | |
| alpha = _numpy.array(alpha, a.dtype).ctypes | |
| beta = _numpy.array(beta, a.dtype).ctypes | |
| cuda_dtype = _dtype.to_cuda_dtype(a.dtype) | |
| alg = _cusparse.CUSPARSE_MV_ALG_DEFAULT | |
| buff_size = _cusparse.spMV_bufferSize(handle, op_a, alpha.data, | |
| desc_a.desc, desc_x.desc, beta.data, | |
| desc_y.desc, cuda_dtype, alg) | |
| buff = _cupy.empty(buff_size, _cupy.int8) | |
| _cusparse.spMV(handle, op_a, alpha.data, desc_a.desc, desc_x.desc, | |
| beta.data, desc_y.desc, cuda_dtype, alg, buff.data.ptr) | |
| return y | |
| def spmm(a, b, c=None, alpha=1, beta=0, transa=False, transb=False): | |
| """Multiplication of sparse matrix and dense matrix. | |
| .. math:: | |
| C = \\alpha * op(A) op(B) + \\beta * C | |
| Args: | |
| a (cupyx.scipy.sparse.csr_matrix, csc_matrix or coo_matrix): | |
| Sparse matrix A | |
| b (cupy.ndarray): Dense matrix B | |
| c (cupy.ndarray or None): Dense matrix C | |
| alpha (scalar): Coefficient | |
| beta (scalar): Coefficient | |
| transa (bool): If ``True``, op(A) = transpose of A. | |
| transb (bool): If ``True``, op(B) = transpose of B. | |
| Returns: | |
| cupy.ndarray | |
| """ | |
| if not check_availability('spmm'): | |
| raise RuntimeError('spmm is not available.') | |
| assert a.ndim == b.ndim == 2 | |
| assert b.flags.f_contiguous | |
| assert c is None or c.flags.f_contiguous | |
| if isinstance(a, cupyx.scipy.sparse.csc_matrix): | |
| aT = a.T | |
| if not isinstance(aT, cupyx.scipy.sparse.csr_matrix): | |
| msg = 'aT must be csr_matrix (actual: {})'.format(type(aT)) | |
| raise TypeError(msg) | |
| a = aT | |
| transa = not transa | |
| if not isinstance(a, (cupyx.scipy.sparse.csr_matrix, | |
| cupyx.scipy.sparse.coo_matrix)): | |
| raise TypeError('unsupported type (actual: {})'.format(type(a))) | |
| a_shape = a.shape if not transa else a.shape[::-1] | |
| b_shape = b.shape if not transb else b.shape[::-1] | |
| if a_shape[1] != b_shape[0]: | |
| raise ValueError('dimension mismatch') | |
| assert a.has_canonical_format | |
| m, k = a_shape | |
| _, n = b_shape | |
| a, b, c = _cast_common_type(a, b, c) | |
| if c is None: | |
| c = _cupy.zeros((m, n), a.dtype, 'F') | |
| elif c.shape[0] != m or c.shape[1] != n: | |
| raise ValueError('dimension mismatch') | |
| if a.nnz == 0: | |
| c.fill(0) | |
| return c | |
| desc_a = SpMatDescriptor.create(a) | |
| desc_b = DnMatDescriptor.create(b) | |
| desc_c = DnMatDescriptor.create(c) | |
| handle = _device.get_cusparse_handle() | |
| op_a = _transpose_flag(transa) | |
| op_b = _transpose_flag(transb) | |
| alpha = _numpy.array(alpha, a.dtype).ctypes | |
| beta = _numpy.array(beta, a.dtype).ctypes | |
| cuda_dtype = _dtype.to_cuda_dtype(a.dtype) | |
| alg = _cusparse.CUSPARSE_MM_ALG_DEFAULT | |
| buff_size = _cusparse.spMM_bufferSize(handle, op_a, op_b, alpha.data, | |
| desc_a.desc, desc_b.desc, beta.data, | |
| desc_c.desc, cuda_dtype, alg) | |
| buff = _cupy.empty(buff_size, _cupy.int8) | |
| buff_size = _cusparse.spMM(handle, op_a, op_b, alpha.data, desc_a.desc, | |
| desc_b.desc, beta.data, desc_c.desc, | |
| cuda_dtype, alg, buff.data.ptr) | |
| return c | |
| def csrsm2(a, b, alpha=1.0, lower=True, unit_diag=False, transa=False, | |
| blocking=True, level_info=False): | |
| """Solves a sparse triangular linear system op(a) * x = alpha * b. | |
| Args: | |
| a (cupyx.scipy.sparse.csr_matrix or cupyx.scipy.sparse.csc_matrix): | |
| Sparse matrix with dimension ``(M, M)``. | |
| b (cupy.ndarray): Dense vector or matrix with dimension ``(M)`` or | |
| ``(M, K)``. | |
| alpha (float or complex): Coefficient. | |
| lower (bool): | |
| True: ``a`` is lower triangle matrix. | |
| False: ``a`` is upper triangle matrix. | |
| unit_diag (bool): | |
| True: diagonal part of ``a`` has unit elements. | |
| False: diagonal part of ``a`` has non-unit elements. | |
| transa (bool or str): True, False, 'N', 'T' or 'H'. | |
| 'N' or False: op(a) == ``a``. | |
| 'T' or True: op(a) == ``a.T``. | |
| 'H': op(a) == ``a.conj().T``. | |
| blocking (bool): | |
| True: blocking algorithm is used. | |
| False: non-blocking algorithm is used. | |
| level_info (bool): | |
| True: solves it with level information. | |
| False: solves it without level information. | |
| Note: ``b`` will be overwritten. | |
| """ | |
| if not check_availability('csrsm2'): | |
| raise RuntimeError('csrsm2 is not available.') | |
| if not (cupyx.scipy.sparse.isspmatrix_csr(a) or | |
| cupyx.scipy.sparse.isspmatrix_csc(a)): | |
| raise ValueError('a must be CSR or CSC sparse matrix') | |
| if not isinstance(b, _cupy.ndarray): | |
| raise ValueError('b must be cupy.ndarray') | |
| if b.ndim not in (1, 2): | |
| raise ValueError('b.ndim must be 1 or 2') | |
| if not (a.shape[0] == a.shape[1] == b.shape[0]): | |
| raise ValueError('invalid shape') | |
| if a.dtype != b.dtype: | |
| raise TypeError('dtype mismatch') | |
| if lower is True: | |
| fill_mode = _cusparse.CUSPARSE_FILL_MODE_LOWER | |
| elif lower is False: | |
| fill_mode = _cusparse.CUSPARSE_FILL_MODE_UPPER | |
| else: | |
| raise ValueError('Unknown lower (actual: {})'.format(lower)) | |
| if unit_diag is False: | |
| diag_type = _cusparse.CUSPARSE_DIAG_TYPE_NON_UNIT | |
| elif unit_diag is True: | |
| diag_type = _cusparse.CUSPARSE_DIAG_TYPE_UNIT | |
| else: | |
| raise ValueError('Unknown unit_diag (actual: {})'.format(unit_diag)) | |
| if blocking is False: | |
| algo = 0 | |
| elif blocking is True: | |
| algo = 1 | |
| else: | |
| raise ValueError('Unknown blocking (actual: {})'.format(blocking)) | |
| if level_info is False: | |
| policy = _cusparse.CUSPARSE_SOLVE_POLICY_NO_LEVEL | |
| elif level_info is True: | |
| policy = _cusparse.CUSPARSE_SOLVE_POLICY_USE_LEVEL | |
| else: | |
| raise ValueError('Unknown level_info (actual: {})'.format(level_info)) | |
| dtype = a.dtype | |
| if dtype.char == 'f': | |
| t = 's' | |
| elif dtype.char == 'd': | |
| t = 'd' | |
| elif dtype.char == 'F': | |
| t = 'c' | |
| elif dtype.char == 'D': | |
| t = 'z' | |
| else: | |
| raise TypeError('Invalid dtype (actual: {})'.format(dtype)) | |
| helper = getattr(_cusparse, t + 'csrsm2_bufferSizeExt') | |
| analysis = getattr(_cusparse, t + 'csrsm2_analysis') | |
| solve = getattr(_cusparse, t + 'csrsm2_solve') | |
| if transa is False or transa == 'N': | |
| transa = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE | |
| elif transa is True or transa == 'T': | |
| transa = _cusparse.CUSPARSE_OPERATION_TRANSPOSE | |
| elif transa == 'H': | |
| if dtype.char in 'fd': | |
| transa = _cusparse.CUSPARSE_OPERATION_TRANSPOSE | |
| else: | |
| transa = _cusparse.CUSPARSE_OPERATION_CONJUGATE_TRANSPOSE | |
| else: | |
| raise ValueError('Unknown transa (actual: {})'.format(transa)) | |
| if cupyx.scipy.sparse.isspmatrix_csc(a): | |
| if transa == _cusparse.CUSPARSE_OPERATION_CONJUGATE_TRANSPOSE: | |
| raise ValueError('If matrix is CSC format and complex dtype,' | |
| 'transa must not be \'H\'') | |
| a = a.T | |
| assert cupyx.scipy.sparse.isspmatrix_csr(a) | |
| transa = 1 - transa | |
| fill_mode = 1 - fill_mode | |
| m = a.shape[0] | |
| nrhs = 1 if b.ndim == 1 else b.shape[1] | |
| if b._f_contiguous: | |
| transb = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE | |
| ldb = m | |
| elif b._c_contiguous: | |
| transb = _cusparse.CUSPARSE_OPERATION_TRANSPOSE | |
| ldb = nrhs | |
| else: | |
| raise ValueError('b must be F-contiguous or C-contiguous.') | |
| handle = _device.get_cusparse_handle() | |
| alpha = _numpy.array(alpha, dtype=dtype) | |
| a_desc = MatDescriptor.create() | |
| a_desc.set_mat_type(_cusparse.CUSPARSE_MATRIX_TYPE_GENERAL) | |
| a_desc.set_mat_index_base(_cusparse.CUSPARSE_INDEX_BASE_ZERO) | |
| a_desc.set_mat_fill_mode(fill_mode) | |
| a_desc.set_mat_diag_type(diag_type) | |
| info = _cusparse.createCsrsm2Info() | |
| ws_size = helper(handle, algo, transa, transb, m, nrhs, a.nnz, | |
| alpha.ctypes.data, a_desc.descriptor, a.data.data.ptr, | |
| a.indptr.data.ptr, a.indices.data.ptr, b.data.ptr, ldb, | |
| info, policy) | |
| ws = _cupy.empty((ws_size,), dtype=_numpy.int8) | |
| analysis(handle, algo, transa, transb, m, nrhs, a.nnz, alpha.ctypes.data, | |
| a_desc.descriptor, a.data.data.ptr, a.indptr.data.ptr, | |
| a.indices.data.ptr, b.data.ptr, ldb, info, policy, ws.data.ptr) | |
| solve(handle, algo, transa, transb, m, nrhs, a.nnz, alpha.ctypes.data, | |
| a_desc.descriptor, a.data.data.ptr, a.indptr.data.ptr, | |
| a.indices.data.ptr, b.data.ptr, ldb, info, policy, ws.data.ptr) | |
| # without sync we'd get either segfault or cuda context error | |
| _stream.get_current_stream().synchronize() | |
| _cusparse.destroyCsrsm2Info(info) | |
| def csrilu02(a, level_info=False): | |
| """Computes incomplete LU decomposition for a sparse square matrix. | |
| Args: | |
| a (cupyx.scipy.sparse.csr_matrix): | |
| Sparse matrix with dimension ``(M, M)``. | |
| level_info (bool): | |
| True: solves it with level information. | |
| False: solves it without level information. | |
| Note: ``a`` will be overwritten. This function does not support fill-in | |
| (only ILU(0) is supported) nor pivoting. | |
| """ | |
| if not check_availability('csrilu02'): | |
| raise RuntimeError('csrilu02 is not available.') | |
| if not cupyx.scipy.sparse.isspmatrix_csr(a): | |
| raise TypeError('a must be CSR sparse matrix') | |
| if a.shape[0] != a.shape[1]: | |
| raise ValueError('invalid shape (a.shape: {})'.format(a.shape)) | |
| if level_info is False: | |
| policy = _cusparse.CUSPARSE_SOLVE_POLICY_NO_LEVEL | |
| elif level_info is True: | |
| policy = _cusparse.CUSPARSE_SOLVE_POLICY_USE_LEVEL | |
| else: | |
| raise ValueError('Unknown level_info (actual: {})'.format(level_info)) | |
| dtype = a.dtype | |
| if dtype.char == 'f': | |
| t = 's' | |
| elif dtype.char == 'd': | |
| t = 'd' | |
| elif dtype.char == 'F': | |
| t = 'c' | |
| elif dtype.char == 'D': | |
| t = 'z' | |
| else: | |
| raise TypeError('Invalid dtype (actual: {})'.format(dtype)) | |
| helper = getattr(_cusparse, t + 'csrilu02_bufferSize') | |
| analysis = getattr(_cusparse, t + 'csrilu02_analysis') | |
| solve = getattr(_cusparse, t + 'csrilu02') | |
| check = getattr(_cusparse, 'xcsrilu02_zeroPivot') | |
| handle = _device.get_cusparse_handle() | |
| m = a.shape[0] | |
| nnz = a.nnz | |
| desc = MatDescriptor.create() | |
| desc.set_mat_type(_cusparse.CUSPARSE_MATRIX_TYPE_GENERAL) | |
| desc.set_mat_index_base(_cusparse.CUSPARSE_INDEX_BASE_ZERO) | |
| info = _cusparse.createCsrilu02Info() | |
| ws_size = helper(handle, m, nnz, desc.descriptor, a.data.data.ptr, | |
| a.indptr.data.ptr, a.indices.data.ptr, info) | |
| ws = _cupy.empty((ws_size,), dtype=_numpy.int8) | |
| position = _numpy.empty((1,), dtype=_numpy.int32) | |
| analysis(handle, m, nnz, desc.descriptor, a.data.data.ptr, | |
| a.indptr.data.ptr, a.indices.data.ptr, info, policy, ws.data.ptr) | |
| try: | |
| check(handle, info, position.ctypes.data) | |
| except Exception: | |
| raise ValueError('a({0},{0}) is missing'.format(position[0])) | |
| solve(handle, m, nnz, desc.descriptor, a.data.data.ptr, | |
| a.indptr.data.ptr, a.indices.data.ptr, info, policy, ws.data.ptr) | |
| try: | |
| check(handle, info, position.ctypes.data) | |
| except Exception: | |
| raise ValueError('u({0},{0}) is zero'.format(position[0])) | |
| def denseToSparse(x, format='csr'): | |
| """Converts a dense matrix into a CSR, CSC or COO format. | |
| Args: | |
| x (cupy.ndarray): A matrix to be converted. | |
| format (str): Format of converted matrix. It must be either 'csr', | |
| 'csc' or 'coo'. | |
| Returns: | |
| cupyx.scipy.sparse.spmatrix: A converted sparse matrix. | |
| """ | |
| if not check_availability('denseToSparse'): | |
| raise RuntimeError('denseToSparse is not available.') | |
| assert x.ndim == 2 | |
| assert x.dtype.char in 'fdFD' | |
| x = _cupy.asfortranarray(x) | |
| desc_x = DnMatDescriptor.create(x) | |
| if format == 'csr': | |
| y = cupyx.scipy.sparse.csr_matrix(x.shape, dtype=x.dtype) | |
| elif format == 'csc': | |
| y = cupyx.scipy.sparse.csc_matrix(x.shape, dtype=x.dtype) | |
| elif format == 'coo': | |
| y = cupyx.scipy.sparse.coo_matrix(x.shape, dtype=x.dtype) | |
| else: | |
| raise TypeError('unsupported format (actual: {})'.format(format)) | |
| desc_y = SpMatDescriptor.create(y) | |
| algo = _cusparse.CUSPARSE_DENSETOSPARSE_ALG_DEFAULT | |
| handle = _device.get_cusparse_handle() | |
| buff_size = _cusparse.denseToSparse_bufferSize(handle, desc_x.desc, | |
| desc_y.desc, algo) | |
| buff = _cupy.empty(buff_size, _cupy.int8) | |
| _cusparse.denseToSparse_analysis(handle, desc_x.desc, | |
| desc_y.desc, algo, buff.data.ptr) | |
| num_rows_tmp = _numpy.array(0, dtype='int64') | |
| num_cols_tmp = _numpy.array(0, dtype='int64') | |
| nnz = _numpy.array(0, dtype='int64') | |
| _cusparse.spMatGetSize(desc_y.desc, num_rows_tmp.ctypes.data, | |
| num_cols_tmp.ctypes.data, nnz.ctypes.data) | |
| nnz = int(nnz) | |
| if _runtime.is_hip: | |
| if nnz == 0: | |
| raise ValueError('hipSPARSE currently cannot handle ' | |
| 'sparse matrices with null ptrs') | |
| if format == 'csr': | |
| indptr = y.indptr | |
| indices = _cupy.empty(nnz, 'i') | |
| data = _cupy.empty(nnz, x.dtype) | |
| y = cupyx.scipy.sparse.csr_matrix((data, indices, indptr), | |
| shape=x.shape) | |
| elif format == 'csc': | |
| indptr = y.indptr | |
| indices = _cupy.empty(nnz, 'i') | |
| data = _cupy.empty(nnz, x.dtype) | |
| y = cupyx.scipy.sparse.csc_matrix((data, indices, indptr), | |
| shape=x.shape) | |
| elif format == 'coo': | |
| row = _cupy.zeros(nnz, 'i') | |
| col = _cupy.zeros(nnz, 'i') | |
| # Note: I would like to use empty() here, but that might cause an | |
| # exception in the row/col number check when creating the coo_matrix, | |
| # so I used zeros() instead. | |
| data = _cupy.empty(nnz, x.dtype) | |
| y = cupyx.scipy.sparse.coo_matrix((data, (row, col)), shape=x.shape) | |
| desc_y = SpMatDescriptor.create(y) | |
| _cusparse.denseToSparse_convert(handle, desc_x.desc, | |
| desc_y.desc, algo, buff.data.ptr) | |
| y._has_canonical_format = True | |
| return y | |
| def sparseToDense(x, out=None): | |
| """Converts sparse matrix to a dense matrix. | |
| Args: | |
| x (cupyx.scipy.sparse.spmatrix): A sparse matrix to convert. | |
| out (cupy.ndarray or None): A dense metrix to store the result. | |
| It must be F-contiguous. | |
| Returns: | |
| cupy.ndarray: A converted dense matrix. | |
| """ | |
| if not check_availability('sparseToDense'): | |
| raise RuntimeError('sparseToDense is not available.') | |
| dtype = x.dtype | |
| assert dtype.char in 'fdFD' | |
| if out is None: | |
| out = _cupy.zeros(x.shape, dtype=dtype, order='F') | |
| else: | |
| assert out.flags.f_contiguous | |
| assert out.dtype == dtype | |
| desc_x = SpMatDescriptor.create(x) | |
| desc_out = DnMatDescriptor.create(out) | |
| algo = _cusparse.CUSPARSE_SPARSETODENSE_ALG_DEFAULT | |
| handle = _device.get_cusparse_handle() | |
| buff_size = _cusparse.sparseToDense_bufferSize(handle, desc_x.desc, | |
| desc_out.desc, algo) | |
| buff = _cupy.empty(buff_size, _cupy.int8) | |
| if _runtime.is_hip: | |
| if x.nnz == 0: | |
| raise ValueError('hipSPARSE currently cannot handle ' | |
| 'sparse matrices with null ptrs') | |
| _cusparse.sparseToDense(handle, desc_x.desc, | |
| desc_out.desc, algo, buff.data.ptr) | |
| return out | |
| def spsm(a, b, alpha=1.0, lower=True, unit_diag=False, transa=False): | |
| """Solves a sparse triangular linear system op(a) * x = alpha * op(b). | |
| Args: | |
| a (cupyx.scipy.sparse.csr_matrix or cupyx.scipy.sparse.coo_matrix): | |
| Sparse matrix with dimension ``(M, M)``. | |
| b (cupy.ndarray): Dense matrix with dimension ``(M, K)``. | |
| alpha (float or complex): Coefficient. | |
| lower (bool): | |
| True: ``a`` is lower triangle matrix. | |
| False: ``a`` is upper triangle matrix. | |
| unit_diag (bool): | |
| True: diagonal part of ``a`` has unit elements. | |
| False: diagonal part of ``a`` has non-unit elements. | |
| transa (bool or str): True, False, 'N', 'T' or 'H'. | |
| 'N' or False: op(a) == ``a``. | |
| 'T' or True: op(a) == ``a.T``. | |
| 'H': op(a) == ``a.conj().T``. | |
| """ | |
| if not check_availability('spsm'): | |
| raise RuntimeError('spsm is not available.') | |
| # Canonicalise transa | |
| if transa is False: | |
| transa = 'N' | |
| elif transa is True: | |
| transa = 'T' | |
| elif transa not in 'NTH': | |
| raise ValueError(f'Unknown transa (actual: {transa})') | |
| # Check A's type and sparse format | |
| if cupyx.scipy.sparse.isspmatrix_csr(a): | |
| pass | |
| elif cupyx.scipy.sparse.isspmatrix_csc(a): | |
| if transa == 'N': | |
| a = a.T | |
| transa = 'T' | |
| elif transa == 'T': | |
| a = a.T | |
| transa = 'N' | |
| elif transa == 'H': | |
| a = a.conj().T | |
| transa = 'N' | |
| lower = not lower | |
| elif cupyx.scipy.sparse.isspmatrix_coo(a): | |
| pass | |
| else: | |
| raise ValueError('a must be CSR, CSC or COO sparse matrix') | |
| assert a.has_canonical_format | |
| # Check B's ndim | |
| if b.ndim == 1: | |
| is_b_vector = True | |
| b = b.reshape(-1, 1) | |
| elif b.ndim == 2: | |
| is_b_vector = False | |
| else: | |
| raise ValueError('b.ndim must be 1 or 2') | |
| # Check shapes | |
| if not (a.shape[0] == a.shape[1] == b.shape[0]): | |
| raise ValueError('mismatched shape') | |
| # Check dtypes | |
| dtype = a.dtype | |
| if dtype.char not in 'fdFD': | |
| raise TypeError('Invalid dtype (actual: {})'.format(dtype)) | |
| if dtype != b.dtype: | |
| raise TypeError('dtype mismatch') | |
| # Prepare fill mode | |
| if lower is True: | |
| fill_mode = _cusparse.CUSPARSE_FILL_MODE_LOWER | |
| elif lower is False: | |
| fill_mode = _cusparse.CUSPARSE_FILL_MODE_UPPER | |
| else: | |
| raise ValueError('Unknown lower (actual: {})'.format(lower)) | |
| # Prepare diag type | |
| if unit_diag is False: | |
| diag_type = _cusparse.CUSPARSE_DIAG_TYPE_NON_UNIT | |
| elif unit_diag is True: | |
| diag_type = _cusparse.CUSPARSE_DIAG_TYPE_UNIT | |
| else: | |
| raise ValueError('Unknown unit_diag (actual: {})'.format(unit_diag)) | |
| # Prepare op_a | |
| if transa == 'N': | |
| op_a = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE | |
| elif transa == 'T': | |
| op_a = _cusparse.CUSPARSE_OPERATION_TRANSPOSE | |
| else: # transa == 'H' | |
| if dtype.char in 'fd': | |
| op_a = _cusparse.CUSPARSE_OPERATION_TRANSPOSE | |
| else: | |
| op_a = _cusparse.CUSPARSE_OPERATION_CONJUGATE_TRANSPOSE | |
| # Prepare op_b | |
| if b._f_contiguous: | |
| op_b = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE | |
| elif b._c_contiguous: | |
| if _cusparse.get_build_version() < 11701: # earlier than CUDA 11.6 | |
| raise ValueError('b must be F-contiguous.') | |
| b = b.T | |
| op_b = _cusparse.CUSPARSE_OPERATION_TRANSPOSE | |
| else: | |
| raise ValueError('b must be F-contiguous or C-contiguous.') | |
| # Allocate space for matrix C. Note that it is known cusparseSpSM requires | |
| # the output matrix zero initialized. | |
| m, _ = a.shape | |
| if op_b == _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE: | |
| _, n = b.shape | |
| else: | |
| n, _ = b.shape | |
| c_shape = m, n | |
| c = _cupy.zeros(c_shape, dtype=a.dtype, order='f') | |
| # Prepare descriptors and other parameters | |
| handle = _device.get_cusparse_handle() | |
| mat_a = SpMatDescriptor.create(a) | |
| mat_b = DnMatDescriptor.create(b) | |
| mat_c = DnMatDescriptor.create(c) | |
| spsm_descr = _cusparse.spSM_createDescr() | |
| alpha = _numpy.array(alpha, dtype=c.dtype).ctypes | |
| cuda_dtype = _dtype.to_cuda_dtype(c.dtype) | |
| algo = _cusparse.CUSPARSE_SPSM_ALG_DEFAULT | |
| try: | |
| # Specify Lower|Upper fill mode | |
| mat_a.set_attribute(_cusparse.CUSPARSE_SPMAT_FILL_MODE, fill_mode) | |
| # Specify Unit|Non-Unit diagonal type | |
| mat_a.set_attribute(_cusparse.CUSPARSE_SPMAT_DIAG_TYPE, diag_type) | |
| # Allocate the workspace needed by the succeeding phases | |
| buff_size = _cusparse.spSM_bufferSize( | |
| handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, | |
| mat_c.desc, cuda_dtype, algo, spsm_descr) | |
| buff = _cupy.empty(buff_size, dtype=_cupy.int8) | |
| # Perform the analysis phase | |
| _cusparse.spSM_analysis( | |
| handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, | |
| mat_c.desc, cuda_dtype, algo, spsm_descr, buff.data.ptr) | |
| # Executes the solve phase | |
| _cusparse.spSM_solve( | |
| handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, | |
| mat_c.desc, cuda_dtype, algo, spsm_descr, buff.data.ptr) | |
| # Reshape back if B was a vector | |
| if is_b_vector: | |
| c = c.reshape(-1) | |
| return c | |
| finally: | |
| # Destroy matrix/vector descriptors | |
| _cusparse.spSM_destroyDescr(spsm_descr) | |
| def spgemm(a, b, alpha=1): | |
| """Matrix-matrix product for CSR-matrix. | |
| math:: | |
| C = alpha * A * B | |
| Args: | |
| a (cupyx.scipy.sparse.csr_matrix): Sparse matrix A. | |
| b (cupyx.scipy.sparse.csr_matrix): Sparse matrix B. | |
| alpha (scalar): Coefficient | |
| Returns: | |
| cupyx.scipy.sparse.csr_matrix | |
| """ | |
| if not check_availability('spgemm'): | |
| raise RuntimeError('spgemm is not available.') | |
| assert a.ndim == b.ndim == 2 | |
| if not isinstance(a, cupyx.scipy.sparse.csr_matrix): | |
| raise TypeError('unsupported type (actual: {})'.format(type(a))) | |
| if not isinstance(b, cupyx.scipy.sparse.csr_matrix): | |
| raise TypeError('unsupported type (actual: {})'.format(type(b))) | |
| assert a.has_canonical_format | |
| assert b.has_canonical_format | |
| if a.shape[1] != b.shape[0]: | |
| raise ValueError('mismatched shape') | |
| m, k = a.shape | |
| _, n = b.shape | |
| a, b = _cast_common_type(a, b) | |
| c_shape = (m, n) | |
| c = cupyx.scipy.sparse.csr_matrix((c_shape), dtype=a.dtype) | |
| handle = _device.get_cusparse_handle() | |
| mat_a = SpMatDescriptor.create(a) | |
| mat_b = SpMatDescriptor.create(b) | |
| mat_c = SpMatDescriptor.create(c) | |
| spgemm_descr = _cusparse.spGEMM_createDescr() | |
| op_a = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE | |
| op_b = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE | |
| alpha = _numpy.array(alpha, dtype=c.dtype).ctypes | |
| beta = _numpy.array(0, dtype=c.dtype).ctypes | |
| cuda_dtype = _dtype.to_cuda_dtype(c.dtype) | |
| algo = _cusparse.CUSPARSE_SPGEMM_DEFAULT | |
| null_ptr = 0 | |
| # Analyze the matrices A and B to understand the memory requirement | |
| buff1_size = _cusparse.spGEMM_workEstimation( | |
| handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, beta.data, | |
| mat_c.desc, cuda_dtype, algo, spgemm_descr, 0, null_ptr) | |
| buff1 = _cupy.empty(buff1_size, _cupy.int8) | |
| _cusparse.spGEMM_workEstimation( | |
| handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, beta.data, | |
| mat_c.desc, cuda_dtype, algo, spgemm_descr, buff1_size, buff1.data.ptr) | |
| # Compute the intermediate product of A and B | |
| buff2_size = _cusparse.spGEMM_compute( | |
| handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, beta.data, | |
| mat_c.desc, cuda_dtype, algo, spgemm_descr, 0, null_ptr) | |
| buff2 = _cupy.empty(buff2_size, _cupy.int8) | |
| _cusparse.spGEMM_compute( | |
| handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, beta.data, | |
| mat_c.desc, cuda_dtype, algo, spgemm_descr, buff2_size, buff2.data.ptr) | |
| # Prepare the arrays for matrix C | |
| c_num_rows = _numpy.array(0, dtype='int64') | |
| c_num_cols = _numpy.array(0, dtype='int64') | |
| c_nnz = _numpy.array(0, dtype='int64') | |
| _cusparse.spMatGetSize(mat_c.desc, c_num_rows.ctypes.data, | |
| c_num_cols.ctypes.data, c_nnz.ctypes.data) | |
| assert c_shape[0] == int(c_num_rows) | |
| assert c_shape[1] == int(c_num_cols) | |
| c_nnz = int(c_nnz) | |
| c_indptr = c.indptr | |
| c_indices = _cupy.empty(c_nnz, 'i') | |
| c_data = _cupy.empty(c_nnz, c.dtype) | |
| _cusparse.csrSetPointers(mat_c.desc, c_indptr.data.ptr, c_indices.data.ptr, | |
| c_data.data.ptr) | |
| # Copy the final product to the matrix C | |
| _cusparse.spGEMM_copy( | |
| handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, beta.data, | |
| mat_c.desc, cuda_dtype, algo, spgemm_descr) | |
| c = cupyx.scipy.sparse.csr_matrix((c_data, c_indices, c_indptr), | |
| shape=c_shape) | |
| _cusparse.spGEMM_destroyDescr(spgemm_descr) | |
| return c | |