gt stringclasses 1
value | context stringlengths 2.49k 119k |
|---|---|
import os
import sys
import stat
import abc
from pathlib import Path
import shlex
import collections
import subprocess
from typing import List
from threading import Thread
import utils
import psutil
import time
from .baseClasses import PythonBatchCommandBase
import logging
log = logging.getLogger(__name__)
class Run... | |
#
# Bare-bones re-implementation of CMA-ES.
#
# This file is part of PINTS (https://github.com/pints-team/pints/) which is
# released under the BSD 3-clause license. See accompanying LICENSE.md for
# copyright notice and full license details.
#
import numpy as np
import pints
import warnings
from numpy.linalg import n... | |
# Copyright (c) 2015 Hewlett-Packard Development Company, L.P.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | |
from pandac.PandaModules import *
from toontown.toonbase.ToonBaseGlobal import *
from direct.interval.IntervalGlobal import *
from DistributedMinigame import *
from direct.distributed.ClockDelta import *
from direct.fsm import ClassicFSM, State
from direct.fsm import State
from direct.task import Task
import ArrowKeys
... | |
#
# Module which supports allocation of ctypes objects from shared memory
#
# multiprocessing/sharedctypes.py
#
# Copyright (c) 2006-2008, R Oudkerk
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are me... | |
import requests
import json
class Navigator(object):
"""
This is just a generic class that provides some functions to help you get authenticated, and work
with the rackspace cloud.
"""
def __init__(self, **kwargs):
self.region = kwargs.get('region')
self.token = None
self.... | |
import re
import numpy as np
import xarray as xr
from scipy.spatial import Delaunay, Voronoi
from ...core.utils import as_id_array
from ...utils import jaggedarray
from ..sort.intpair import pair_isin
from ..sort.sort import reverse_one_to_one
class VoronoiDelaunay(object):
def __init__(self, xy_of_node):
... | |
# This file helps to compute a version number in source trees obtained from
# git-archive tarball (such as those provided by githubs download-from-tag
# feature). Distribution tarballs (built by setup.py sdist) and build
# directories (produced by setup.py build) will contain a much shorter file
# that just contains t... | |
###############################################################################
# Imports
###############################################################################
# Python
from collections import Iterable
from importlib import import_module
# Django
from django.conf import settings
from django.contrib.auth impo... | |
# -*- coding: utf-8 -*-
from abc import abstractmethod
import numpy as np
import tensorflow as tf
import inferbeddings.activations as activations
from inferbeddings.nli import tfutil
from inferbeddings.nli import BaseRTEModel
import logging
logger = logging.getLogger(__name__)
class BaseDecomposableAttentionMod... | |
from __future__ import division
import collections
import datetime
import logging
import time
import zlib
import numpy as np
from lazy import lazy
logger = logging.getLogger(__name__)
# After 10 s, messages are no longer fresh
FRESHNESS_TIME = 10
# Number of seconds over which to average event rate
EVENTRATE_TIME... | |
import scipy.cluster.hierarchy as sch
from scipy.spatial import distance
from bootstrap_cluster import bootstrapFeatures, bootstrapObservations
import numpy as np
import pandas as pd
from functools import partial
from .comparison import _alignClusterMats, alignClusters
from .preprocessing import partialCorrNormalize
f... | |
#!/usr/bin/python
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# Ansible is distribut... | |
# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | |
# Copyright (C) 2014 Stefan C. Mueller
import unittest
import pickle
import cPickle
import StringIO as stringio
import utwist
from twisted.internet import defer, reactor
from anycall import rpc
from anycall.rpc import RPCSystem
class TestRPC(unittest.TestCase):
@defer.inlineCallbacks
def twisted_setup... | |
# Copyright 2015-2018 Capital One Services, LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed ... | |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | |
from __future__ import absolute_import
import collections
import contextlib
import copy
import json
import threading
import typing as tp # NOQA
import warnings
import numpy
import six
import chainer
from chainer import backend
from chainer import configuration
from chainer import serializer as serializer_module
from... | |
# -*- coding: utf-8 -*-
###############################################################################
# Description:
# This is a collection of utility / helper functions for computer vision tasks.
# Note that most of these functions are not well tested, but are
# prototyping implementations.
#
# Typical mea... | |
import random
from enum import Enum
class LabelEvent(Enum):
APPROVED = 'approved'
REJECTED = 'rejected'
CONFLICT = 'conflict'
SUCCEED = 'succeed'
FAILED = 'failed'
TRY = 'try'
TRY_SUCCEED = 'try_succeed'
TRY_FAILED = 'try_failed'
EXEMPTED = 'exempted'
TIMED_OUT = 'timed_out'
... | |
import datetime
from collections import OrderedDict
from django.contrib.auth.models import User
from django.test import TestCase
from .models import Order, RevisionableModel, TestObject
class ExtraRegressTests(TestCase):
def setUp(self):
self.u = User.objects.create_user(
username="fred",
... | |
# -*- coding: utf-8 -*-
# ########################## Copyrights and license ############################
# #
# Copyright 2012 Andrew Bettison <andrewb@zip.com.au> #
# Copyright 2012 Philip Kimmey <philip@rover.com> ... | |
# Copyright (c) 2013 OpenStack Foundation
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless ... | |
import io
import os
from django.conf import settings
from django.db import models
from PIL import Image
from tower import ugettext_lazy as _lazy
from uuid import uuid4
from kitsune.sumo.models import ModelBase
from kitsune.sumo.urlresolvers import reverse
HOT_TOPIC_SLUG = 'hot'
class Product(ModelBase):
title... | |
# coding: utf-8
"""
Swaggy Jenkins
Jenkins API clients generated from Swagger / Open API specification # noqa: E501
The version of the OpenAPI document: 1.1.2-pre.0
Contact: blah@cliffano.com
Generated by: https://openapi-generator.tech
"""
try:
from inspect import getfullargspec
except Im... | |
#!/usr/bin/env python
# William Holloway william.holloway@nyumc.org
#
# Copyright (C) 2008-2009 NYU Langone Medical Center
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restricti... | |
"""
Timezone-related classes and functions.
This module uses pytz when it's available and fallbacks when it isn't.
"""
from datetime import datetime, timedelta, tzinfo
from threading import local
import sys
import time as _time
try:
import pytz
except ImportError:
pytz = None
from django.conf import setting... | |
"""
SI unit system.
Based on MKSA, which stands for "meter, kilogram, second, ampere".
Added kelvin, candela and mole.
"""
from __future__ import division
from sympy.physics.units import DimensionSystem, Dimension, dHg0
from sympy import Rational, pi, sqrt, S
from sympy.physics.units.definitions.dimension_definitio... | |
#-------------------------------------------------------------
#
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under... | |
from __future__ import print_function, division
import matplotlib
import logging
from sys import stdout
matplotlib.use('Agg') # Must be before importing matplotlib.pyplot or pylab!
from neuralnilm import (Net, RealApplianceSource,
BLSTMLayer, DimshuffleLayer,
Bidirectio... | |
#########################################################################
# #
# #
# copyright 2002 Paul Henry Tremblay #
# ... | |
#
# Timer.py -- GUI independent timers.
#
# Eric Jeschke (eric@naoj.org)
#
# Copyright (c) Eric R. Jeschke. All rights reserved.
# This is open-source software licensed under a BSD license.
# Please see the file LICENSE.txt for details.
#
from __future__ import print_function
import time
import threading
from ginga.m... | |
# uncompyle6 version 2.9.10
# Python bytecode 2.7 (62211)
# Decompiled from: Python 3.6.0b2 (default, Oct 11 2016, 05:27:10)
# [GCC 6.2.0 20161005]
# Embedded file name: dbtables.py
_cvsid = '$Id$'
import re
import sys
import copy
import random
import struct
if sys.version_info[0] >= 3:
import pickle
elif sys.vers... | |
"""
Common verification code.
"""
from __future__ import absolute_import, division, print_function
import re
import attr
from ._compat import maketrans, text_type
from .exceptions import (
CertificateError,
DNSMismatch,
SRVMismatch,
URIMismatch,
VerificationError,
)
try:
import idna
except ... | |
# -*- coding: utf-8 -*-
##############################################################################
#
# OpenERP, Open Source Management Solution
# Copyright (C) 2004-2010 Tiny SPRL (<http://tiny.be>).
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU... | |
# -*- coding: utf-8 -*-
""""
author: 'Omid Sadjadi, Timothee Kheyrkhah'
email: 'omid.sadjadi@nist.gov'
"""
import time
import warnings
from numbers import Number
import numpy as np
from scipy.linalg import cholesky, eigh, inv, solve, svd
from six import string_types
from odin.backend import calc_white_mat, length_nor... | |
#!/usr/bin/python
"""The MIT License (MIT)
Copyright (c) 2016 shaldev
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, m... | |
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under th... | |
# Copyright 2021 The Cirq Developers
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | |
import inspect
import copy
import threading
import logging
import datetime
from . import events
__author__ = "Piotr Gawlowicz, Anatolij Zubow"
__copyright__ = "Copyright (c) 2015, Technische Universitat Berlin"
__version__ = "0.1.0"
__email__ = "{gawlowicz|zubow}@tkn.tu-berlin.de"
class CallingContext(object):
d... | |
#!/usr/bin/env python3
# Copyright (c) 2019-2020 The Bitcoin Core developers
# Distributed under the MIT software license, see the accompanying
# file COPYING or http://www.opensource.org/licenses/mit-license.php.
"""Test the importdescriptors RPC.
Test importdescriptors by generating keys on node0, importing the corr... | |
names = {0: 'object',
1: 'type',
2: 'unicode',
3: 'dict',
4: 'list',
5: 'slice',
6: 'super',
7: 'staticmethod',
8: 'float',
9: 'enumerate',
10: 'file',
11: 'basestring',
12: 'long',
13: 'tuple',
14: 'str',
15: 'property',
16: 'int',
17: 'xrange',
18: 'file',
19: 'complex',
20: 'bool',
21: 'classmet... | |
# -*- coding: utf-8 -*-
"""
markupsafe._constants
~~~~~~~~~~~~~~~~~~~~~
:copyright: 2010 Pallets
:license: BSD-3-Clause
"""
HTML_ENTITIES = {
"AElig": 198,
"Aacute": 193,
"Acirc": 194,
"Agrave": 192,
"Alpha": 913,
"Aring": 197,
"Atilde": 195,
"Auml": 196,
"Beta": 914,
"Ccedil":... | |
#!/usr/bin/env python
# pylint: disable=missing-docstring
#
# Copyright 2017 Red Hat, Inc. and/or its affiliates
# and other contributors as indicated by the @author tags.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obt... | |
from __future__ import division
from sympy import I, Rational, Symbol, pi, sqrt
from sympy.geometry import Line, Point, Point2D, Point3D, Line3D, Plane
from sympy.geometry.entity import rotate, scale, translate
from sympy.matrices import Matrix
from sympy.utilities.iterables import subsets, permutations, cartes
from s... | |
from __future__ import unicode_literals
import datetime
import os
import re
import sys
import types
from django.conf import settings
from django.core.urlresolvers import resolve, Resolver404
from django.http import (HttpResponse, HttpResponseNotFound, HttpRequest,
build_request_repr)
from django.template import T... | |
"""autograder.py: An interface to the autograder infrastructure (named autopy)
This module interfaces the OK Server with Autopy. The actual autograding happens
in a sandboxed environment.
"""
import collections
import datetime
import enum
import json
import logging
import time
import oauthlib.common
import requests
... | |
#!/usr/bin/env python
from tornado.escape import utf8, _unicode, native_str
from tornado.httpclient import HTTPRequest, HTTPResponse, HTTPError, AsyncHTTPClient, main
from tornado.httputil import HTTPHeaders
from tornado.iostream import IOStream, SSLIOStream
from tornado import stack_context
from tornado.util import ... | |
import requests
import json
import UnityClasses
from .UnityClasses import *
requests.packages.urllib3.disable_warnings()
class Unity:
""" Class representing an EMC Unity Array """
def __init__(self, ip_addr, username, password):
self.ip_addr = ip_addr
self.username = username
self.pas... | |
#!/usr/bin/env python
#
# Copyright 2008 The Closure Linter Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#... | |
"""
Provide functionality to interact with Cast devices on the network.
For more details about this platform, please refer to the documentation at
https://home-assistant.io/components/media_player.cast/
"""
# pylint: disable=import-error
import logging
import voluptuous as vol
from homeassistant.components.media_pla... | |
import shutil
import os
import os.path as osp
import glob as gb
import json
import numpy as np
#from six import string_types
#
from nilearn import masking as msk
from nilearn._utils import concat_niimgs
# from nilearn.image.image import _compute_mean
#
import utils._utils as ucr
import utils.setup_filenames as suf
im... | |
import pytest
import numpy as np
from numpy.testing import (assert_array_almost_equal, assert_array_equal,
assert_equal)
from scipy import sparse
from sklearn import datasets, svm, linear_model, base
from sklearn.datasets import make_classification, load_digits, make_blobs
from sklearn.svm.... | |
from __future__ import absolute_import
from typing import Any, Optional, Tuple, List, Set
from django.utils.translation import ugettext as _
from django.conf import settings
from django.db import transaction
from django.http import HttpRequest, HttpResponse
from django.views.decorators.csrf import csrf_exempt
from ze... | |
# Copyright 2011 OpenStack Foundation
# Copyright 2013 Rackspace Hosting
# Copyright 2013 Hewlett-Packard Development Company, L.P.
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a co... | |
import sys
import os
import sys
import httplib
import urllib2
import simplejson
from time import strftime, localtime
from cps.base import BaseClient
from conpaas.core import https
from cps import taskfarm
# TODO: as this file was created from a BLUEPRINT file,
# you may want to change ports, paths and/or methods... | |
#!/usr/bin/env python
# -- Content-Encoding: UTF-8 --
"""
COHORTE Java isolate loader, based on jPype
**TODO:**
* Review constants names & values
:author: Thomas Calmant
:license: Apache Software License 2.0
..
Copyright 2014 isandlaTech
Licensed under the Apache License, Version 2.0 (the "License");
y... | |
##########################################################################
#
# Copyright (c) 2013-2014, Image Engine Design Inc. All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redi... | |
"""Core module for HCI operations.
"""
import logging
import multiprocessing as mp
import os
import select
import signal
from . import bluez
from . import command as btcmd
from .command import HCICommand, HCIReadBDAddr
from .data import HCIACLData, HCISCOData
from .error import HCICommandError, HCIParseError, HCITimeo... | |
from abc import ABCMeta, abstractmethod
import os
import re
import bb
class Manifest(object):
"""
This is an abstract class. Do not instantiate this directly.
"""
__metaclass__ = ABCMeta
PKG_TYPE_MUST_INSTALL = "mip"
PKG_TYPE_MULTILIB = "mlp"
PKG_TYPE_LANGUAGE = "lgp"
PKG_TYPE_ATTEMPT... | |
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# ... | |
#!/usr/bin/env python
'''
Copyright 2015 Ivan Sadikov
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to... | |
"""Support for Ubiquiti's UVC cameras."""
from datetime import datetime
import logging
import re
from typing import Optional
import requests
from uvcclient import camera as uvc_camera, nvr
import voluptuous as vol
from homeassistant.components.camera import PLATFORM_SCHEMA, SUPPORT_STREAM, Camera
from homeassistant.c... | |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | |
# ===============================================================================
# Copyright 2012 Jake Ross
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licens... | |
#
# Copyright 2013 NEC Corporation. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | |
from __future__ import absolute_import, division, print_function
import inspect
import os
import shutil
from collections import OrderedDict, defaultdict
from functools import lru_cache, wraps
import numpy as np
from decorator import FunctionMaker
from six import string_types
from six.moves import builtins
__all__ = ... | |
"""Support for Rflink lights."""
from __future__ import annotations
import logging
import re
import voluptuous as vol
from homeassistant.components.light import (
ATTR_BRIGHTNESS,
PLATFORM_SCHEMA,
SUPPORT_BRIGHTNESS,
LightEntity,
)
from homeassistant.const import CONF_DEVICES, CONF_NAME, CONF_TYPE
fr... | |
# -*- coding: utf-8 -*-
"""
==========================
Bipartite Graph Algorithms
==========================
"""
# Copyright (C) 2013-2016 by
# Aric Hagberg <hagberg@lanl.gov>
# Dan Schult <dschult@colgate.edu>
# Pieter Swart <swart@lanl.gov>
# All rights reserved.
# BSD license.
import networkx as nx... | |
#!/usr/bin/env python
from sys import stdout, stderr, argv, exit, maxint, setrecursionlimit
from multiprocessing import Pool, Queue, JoinableQueue, cpu_count
from itertools import izip, combinations, product, chain
from os.path import basename, abspath, relpath, dirname, join, isfile
from bisect import bisect, insort
... | |
"""
sphinx.ext.viewcode
~~~~~~~~~~~~~~~~~~~
Add links to module code in Python object descriptions.
:copyright: Copyright 2007-2019 by the Sphinx team, see AUTHORS.
:license: BSD, see LICENSE for details.
"""
import traceback
import warnings
from docutils import nodes
import sphinx
from sphinx ... | |
"""
Convenient shortcuts to manage or check object permissions.
"""
from django.contrib.auth.models import Permission, User, Group
from django.contrib.contenttypes.models import ContentType
from django.db import models
from django.db.models import Q
from django.shortcuts import _get_queryset
from guardian.core import O... | |
"""Module for ticket-related utilities."""
from vodreassembler import util
from vodreassembler import protocol
import zlib
class Ticket:
def __init__(self, ticket_data):
self._ticket_data = ticket_data
self._request = None
self._response = None
@property
def ticket_id(self):
return self._ticke... | |
# Copyright 2016 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
import contextlib
import logging
import os
import shutil
import subprocess
import sys
import tempfile
import time
_SRC_DIR = os.path.abspath(os.path.join(
... | |
from generator.actions import Actions
import string
import random
import copy
import struct
def rs( length ):
return ''.join( random.choice( string.lowercase + string.uppercase + string.digits) for _ in range(length) )
monster_names = [ "Lost Needless Duck", "The Commander", "Toxic Major", "El Spider", "The Heroic E... | |
# Copyright 2009 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or ... | |
'''
Copyright (c) OS-Networks, http://os-networks.net
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright
notice, this list of conditions and the following... | |
# Copyright (c) 2014-present PlatformIO <contact@platformio.org>
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appli... | |
import copy
import logging
from random import shuffle
import socket
import struct
from threading import local
import six
from kafka.common import ConnectionError
log = logging.getLogger("kafka")
DEFAULT_SOCKET_TIMEOUT_SECONDS = 120
DEFAULT_KAFKA_PORT = 9092
def collect_hosts(hosts, randomize=True):
"""
Co... | |
#!/usr/bin/env python
#
# Copyright 2009 Facebook
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | |
# -*- coding: utf-8 -*-
"""Export processing results to Timesketch.
Threaded version of existing Timesketch module."""
import re
import time
from typing import Optional, List, Type
from timesketch_import_client import importer
from timesketch_api_client import sketch as ts_sketch
from timesketch_api_client import cli... | |
# -*- coding: ISO-8859-15 -*-
# =============================================================================
# Copyright (c) 2008 Tom Kralidis
#
# Authors : Tom Kralidis <tomkralidis@gmail.com>
#
# Contact email: tomkralidis@gmail.com
# =============================================================================
imp... | |
import pickle
import logging
from indra.statements import Agent
import indra.tools.assemble_corpus as ac
from indra.databases import hgnc_client
from indra.ontology.bio import bio_ontology
logger = logging.getLogger(__name__)
class IncrementalModel(object):
"""Assemble a model incrementally by iteratively adding... | |
'''
Notes.
From the AST documentation: "The Box class does not define any new attributes beyond those
which are applicable to all Regions.", i.e. for AST, there is nothing special about a box
beyond a specific means to define it, i.e. a corner and center or two corner points.
'''
from __future__ import annotations #... | |
import numpy
import six
from chainer import cuda
from chainer import function
from chainer.utils import array
from chainer.utils import type_check
def _mat_ptrs(a):
"""Creates an array of pointers to matrices
Args:
a: A batch of matrices on GPU.
Returns:
GPU array of pointers to matrices... | |
import csv
import sys
import itertools
from bs4 import BeautifulSoup
import nltk
from nltk.corpus import stopwords
from sklearn.feature_extraction.text import CountVectorizer
from sklearn.ensemble import RandomForestClassifier
import numpy as np
import random
from sklearn.metrics import confusion_matrix
from keras.pr... | |
# Copyright 2016 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
import json
import logging
import os
import sys
from telemetry.testing import fakes
from telemetry.testing import browser_test_context
from gpu_tests impor... | |
import numpy
import math
import sys
import re
from scipy import stats
####################################################################
def file_len(fname):
with open(fname) as f:
for i, l in enumerate(f):
pass
return i + 1
####################################################################
f... | |
#import a bunch of stuff
from common import sampler, weighted_sampler, get_file, defaultdict
import os, sha, sys, re, random, copy, time, multiprocessing
from optparse import OptionParser
#input options. as ever, to see usage run: "python parallel.genet.alg.final.py -h"
#NOTE: all options beside the marker chromosome... | |
"""
Usage: fit_hlmm_model.py
This script fits a heteroskedastic linear model or a heteroskedastic linear mixed model to a given response (phenotype), mean covariates,
variance covariates, and variables to model random effects for.
The phenotype (response) file and covariate file formats are the same: FID, IID, Trait1... | |
# coding: utf-8
import re
_inline_tags = [
'a', 'em', 'strong', 'small', 's', 'cite', 'q', 'dfn', 'abbr', 'data',
'time', 'code', 'var', 'samp', 'kbd', 'sub', 'sup', 'i', 'b', 'u', 'mark',
'ruby', 'rt', 'rp', 'bdi', 'bdo', 'span', 'br', 'wbr', 'ins', 'del',
'img', 'font',
]
_valid_end = r'(?!:/|[^\w\... | |
"""analysis module."""
import datetime
from django.contrib.auth.models import User
from django.core.exceptions import ObjectDoesNotExist
from django.db.models import Sum, Q
from apps.managers.log_mgr.models import MakahikiLog
from apps.managers.player_mgr import player_mgr
from apps.managers.player_mgr.models import P... | |
# flake8: noqa
# __reproducible_start__
import numpy as np
from ray import tune
def train(config):
# Set seed for trainable random result.
# If you remove this line, you will get different results
# each time you run the trial, even if the configuration
# is the same.
np.random.seed(config["seed"... | |
# Copyright 2017 The TensorFlow Authors All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | |
##TODO mock a gemini db
import pytest
from puzzle.plugins import GeminiPlugin
from puzzle.models import Individual, Variant, DotDict
def test_get_all_variants(gemini_case_obj):
"""Test to get some variants from the gemini adapter"""
plugin = GeminiPlugin()
plugin.add_case(gemini_case_obj)
filters = {}... | |
"""Test all ConfigStore implementations
"""
import getpass
import os
from copy import copy
import smif.data_layer.database.setup_database
from pytest import fixture, mark, param, raises
from smif.data_layer.database_interface import DbConfigStore
from smif.data_layer.file.file_config_store import YamlConfigStore
from ... | |
# -*- coding: UTF-8 -*-
import json
import logging
from uuid import UUID
from urllib.parse import quote
import pytz
from github import Github, GithubException
from django.conf import settings
from github.GithubException import UnknownObjectException
from symcon import models, tasks
logger = logging.getLogger(__name... | |
# -*- coding: utf-8 -*-
# FOGLAMP_BEGIN
# See: http://foglamp.readthedocs.io/
# FOGLAMP_END
import asyncio
import json
from uuid import UUID
from aiohttp import web
import pytest
from unittest.mock import MagicMock, patch, call
from foglamp.services.core import routes
from foglamp.services.core import connect
from f... | |
####################################
# Driftwood 2D Game Dev. Suite #
# framemanager.py #
# Copyright 2014-2017 #
# Michael D. Reiley & Paul Merrill #
####################################
# **********
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of ... |
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