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results/experiments/exp_7/results.json
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| 1 |
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{
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| 2 |
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"geneformer": {
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| 3 |
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"chipatlas": {
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| 4 |
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"per_tf": {
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| 5 |
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"CTCF": {
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| 6 |
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"auroc": 0.5085,
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| 7 |
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"auprc": 0.09
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| 8 |
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},
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| 9 |
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"GATA2": {
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| 10 |
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"auroc": 0.4253,
|
| 11 |
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"auprc": 0.8849
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| 12 |
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},
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| 13 |
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"NEUROD1": {
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| 14 |
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"auroc": 0.3249,
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| 15 |
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"auprc": 0.622
|
| 16 |
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},
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| 17 |
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"OLIG2": {
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| 18 |
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"auroc": 0.2726,
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| 19 |
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"auprc": 0.4281
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| 20 |
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},
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| 21 |
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"PAX6": {
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| 22 |
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"auroc": 0.4725,
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| 23 |
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"auprc": 0.0212
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| 24 |
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| 25 |
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"REST": {
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| 26 |
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"auroc": 0.6407,
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| 27 |
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"auprc": 0.9109
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| 28 |
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}
|
| 29 |
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},
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| 30 |
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"median_auroc": 0.4489,
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| 31 |
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"mean_auroc": 0.4407
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| 32 |
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},
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| 33 |
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"depmap": {
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| 34 |
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"auroc": 0.9296,
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| 35 |
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"auprc": 0.542,
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| 36 |
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"n_genes": 17974,
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| 37 |
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"n_essential": 1502
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| 38 |
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},
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| 39 |
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"msigdb": {
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| 40 |
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"n_sets_evaluated": 200,
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| 41 |
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"median_auroc": 0.7629,
|
| 42 |
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"mean_auroc": 0.7569,
|
| 43 |
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"top_sets": {
|
| 44 |
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"hallmark:Myc Targets V1": 0.9682,
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| 45 |
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"kegg:Histidine metabolism": 0.9594,
|
| 46 |
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"hallmark:Myc Targets V2": 0.9593,
|
| 47 |
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"kegg:Ascorbate and aldarate metabolism": 0.9581,
|
| 48 |
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"hallmark:E2F Targets": 0.9484,
|
| 49 |
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"hallmark:IL-6/JAK/STAT3 Signaling": 0.9458,
|
| 50 |
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"hallmark:Epithelial Mesenchymal Transition": 0.9445,
|
| 51 |
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"hallmark:Oxidative Phosphorylation": 0.9335,
|
| 52 |
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"hallmark:TNF-alpha Signaling via NF-kB": 0.9319,
|
| 53 |
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"kegg:Butanoate metabolism": 0.926
|
| 54 |
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}
|
| 55 |
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},
|
| 56 |
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"tf_clustering": {
|
| 57 |
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"ari": 0.0225,
|
| 58 |
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"n_tfs": 1545,
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| 59 |
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"n_families": 35
|
| 60 |
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}
|
| 61 |
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},
|
| 62 |
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"scgpt": {
|
| 63 |
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"chipatlas": {
|
| 64 |
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"per_tf": {
|
| 65 |
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"CTCF": {
|
| 66 |
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"auroc": 0.499,
|
| 67 |
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"auprc": 0.0891
|
| 68 |
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},
|
| 69 |
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"GATA2": {
|
| 70 |
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"auroc": 0.4852,
|
| 71 |
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"auprc": 0.8967
|
| 72 |
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},
|
| 73 |
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"NEUROD1": {
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| 74 |
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"auroc": 0.4861,
|
| 75 |
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"auprc": 0.7105
|
| 76 |
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},
|
| 77 |
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"OLIG2": {
|
| 78 |
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"auroc": 0.4954,
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| 79 |
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"auprc": 0.5604
|
| 80 |
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},
|
| 81 |
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"PAX6": {
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| 82 |
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"auroc": 0.495,
|
| 83 |
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"auprc": 0.0222
|
| 84 |
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},
|
| 85 |
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"REST": {
|
| 86 |
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"auroc": 0.5162,
|
| 87 |
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"auprc": 0.8693
|
| 88 |
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}
|
| 89 |
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},
|
| 90 |
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"median_auroc": 0.4952,
|
| 91 |
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"mean_auroc": 0.4962
|
| 92 |
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},
|
| 93 |
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"depmap": {
|
| 94 |
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"auroc": 0.4948,
|
| 95 |
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"auprc": 0.0824,
|
| 96 |
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"n_genes": 17974,
|
| 97 |
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"n_essential": 1502
|
| 98 |
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},
|
| 99 |
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"msigdb": {
|
| 100 |
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"n_sets_evaluated": 200,
|
| 101 |
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"median_auroc": 0.5183,
|
| 102 |
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"mean_auroc": 0.5214,
|
| 103 |
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"top_sets": {
|
| 104 |
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"kegg:Glyoxylate and dicarboxylate metabolism": 0.7432,
|
| 105 |
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"kegg:ABC transporters": 0.714,
|
| 106 |
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"kegg:African trypanosomiasis": 0.7074,
|
| 107 |
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"kegg:Glucagon signaling pathway": 0.7001,
|
| 108 |
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"kegg:Histidine metabolism": 0.6983,
|
| 109 |
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"kegg:DNA replication": 0.6946,
|
| 110 |
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"kegg:Insulin resistance": 0.6846,
|
| 111 |
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"kegg:Fatty acid biosynthesis": 0.6751,
|
| 112 |
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"kegg:Chemokine signaling pathway": 0.6689,
|
| 113 |
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"kegg:Ascorbate and aldarate metabolism": 0.666
|
| 114 |
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}
|
| 115 |
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|
| 116 |
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"tf_clustering": {
|
| 117 |
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"ari": 0.0241,
|
| 118 |
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"n_tfs": 1545,
|
| 119 |
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"n_families": 35
|
| 120 |
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}
|
| 121 |
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},
|
| 122 |
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"scprint": {
|
| 123 |
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"chipatlas": {
|
| 124 |
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"per_tf": {
|
| 125 |
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"CTCF": {
|
| 126 |
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"auroc": 0.4583,
|
| 127 |
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"auprc": 0.0806
|
| 128 |
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},
|
| 129 |
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"GATA2": {
|
| 130 |
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"auroc": 0.5183,
|
| 131 |
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"auprc": 0.9044
|
| 132 |
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},
|
| 133 |
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"NEUROD1": {
|
| 134 |
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"auroc": 0.5924,
|
| 135 |
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"auprc": 0.7717
|
| 136 |
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},
|
| 137 |
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"OLIG2": {
|
| 138 |
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"auroc": 0.5062,
|
| 139 |
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"auprc": 0.5829
|
| 140 |
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},
|
| 141 |
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"PAX6": {
|
| 142 |
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"auroc": 0.5349,
|
| 143 |
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"auprc": 0.0262
|
| 144 |
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},
|
| 145 |
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"REST": {
|
| 146 |
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"auroc": 0.6295,
|
| 147 |
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"auprc": 0.9057
|
| 148 |
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}
|
| 149 |
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},
|
| 150 |
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"median_auroc": 0.5266,
|
| 151 |
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"mean_auroc": 0.5399
|
| 152 |
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},
|
| 153 |
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"depmap": {
|
| 154 |
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"auroc": 0.8865,
|
| 155 |
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"auprc": 0.4573,
|
| 156 |
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"n_genes": 17974,
|
| 157 |
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"n_essential": 1502
|
| 158 |
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},
|
| 159 |
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"msigdb": {
|
| 160 |
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"n_sets_evaluated": 200,
|
| 161 |
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"median_auroc": 0.866,
|
| 162 |
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"mean_auroc": 0.8496,
|
| 163 |
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"top_sets": {
|
| 164 |
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"kegg:ABC transporters": 1.0,
|
| 165 |
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"kegg:Folate biosynthesis": 0.9976,
|
| 166 |
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"kegg:Glycosaminoglycan biosynthesis": 0.9972,
|
| 167 |
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"kegg:African trypanosomiasis": 0.9969,
|
| 168 |
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"kegg:Glycosaminoglycan degradation": 0.9955,
|
| 169 |
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"kegg:Fatty acid degradation": 0.9916,
|
| 170 |
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"kegg:Citrate cycle (TCA cycle)": 0.9896,
|
| 171 |
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"kegg:Collecting duct acid secretion": 0.9893,
|
| 172 |
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"kegg:Glycine, serine and threonine metabolism": 0.9871,
|
| 173 |
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"kegg:Cytokine-cytokine receptor interaction": 0.9866
|
| 174 |
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}
|
| 175 |
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},
|
| 176 |
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"tf_clustering": {
|
| 177 |
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"ari": 0.078,
|
| 178 |
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"n_tfs": 1545,
|
| 179 |
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"n_families": 35
|
| 180 |
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}
|
| 181 |
+
},
|
| 182 |
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"pinnacle": {
|
| 183 |
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"chipatlas": {
|
| 184 |
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"per_tf": {
|
| 185 |
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"CTCF": {
|
| 186 |
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"auroc": 0.5339,
|
| 187 |
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"auprc": 0.0964
|
| 188 |
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},
|
| 189 |
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"GATA2": {
|
| 190 |
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"auroc": 0.6692,
|
| 191 |
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"auprc": 0.9344
|
| 192 |
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},
|
| 193 |
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"NEUROD1": {
|
| 194 |
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"auroc": 0.6024,
|
| 195 |
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"auprc": 0.7636
|
| 196 |
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},
|
| 197 |
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"OLIG2": {
|
| 198 |
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"auroc": 0.4796,
|
| 199 |
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"auprc": 0.5718
|
| 200 |
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},
|
| 201 |
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"PAX6": {
|
| 202 |
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"auroc": 0.5608,
|
| 203 |
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"auprc": 0.0269
|
| 204 |
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},
|
| 205 |
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"REST": {
|
| 206 |
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"auroc": 0.7129,
|
| 207 |
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"auprc": 0.9236
|
| 208 |
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}
|
| 209 |
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|
| 210 |
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"median_auroc": 0.5816,
|
| 211 |
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"mean_auroc": 0.5931
|
| 212 |
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|
| 213 |
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"depmap": {
|
| 214 |
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"auroc": 0.7993,
|
| 215 |
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"auprc": 0.2125,
|
| 216 |
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"n_genes": 17974,
|
| 217 |
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"n_essential": 1502
|
| 218 |
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|
| 219 |
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|
| 220 |
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"n_sets_evaluated": 200,
|
| 221 |
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"median_auroc": 0.6465,
|
| 222 |
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"mean_auroc": 0.6427,
|
| 223 |
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"top_sets": {
|
| 224 |
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"kegg:Citrate cycle (TCA cycle)": 0.8665,
|
| 225 |
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"kegg:Complement and coagulation cascades": 0.8483,
|
| 226 |
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"hallmark:Myc Targets V1": 0.8433,
|
| 227 |
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"kegg:Glyoxylate and dicarboxylate metabolism": 0.8272,
|
| 228 |
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"kegg:Leishmaniasis": 0.8255,
|
| 229 |
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"hallmark:G2-M Checkpoint": 0.8197,
|
| 230 |
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"hallmark:E2F Targets": 0.8027,
|
| 231 |
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"hallmark:Oxidative Phosphorylation": 0.8009,
|
| 232 |
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"hallmark:Myogenesis": 0.8003,
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| 233 |
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| 347 |
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| 348 |
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| 349 |
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| 350 |
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| 351 |
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| 352 |
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| 353 |
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| 354 |
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| 355 |
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| 356 |
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| 361 |
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| 362 |
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