Add train, validation, test with schema

.gitattributes

@@ -59,3 +59,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.mp4 filter=lfs diff=lfs merge=lfs -text
 *.webm filter=lfs diff=lfs merge=lfs -text
 data/biored_train.jsonl filter=lfs diff=lfs merge=lfs -text
+data/train.jsonl filter=lfs diff=lfs merge=lfs -text

README.md

@@ -1,22 +1,32 @@
 ---
-features:
-  - name: input
-    dtype: string
-  - name: output
-    dtype: json
-  - name: schema
-    list:
-      - name: label
-        dtype: string
-      - name: description
-        dtype: string
+dataset_info:
+  config_name: default
+  features:
+    - name: input
+      dtype: string
+    - name: output
+      dtype: json
+    - name: schema
+      struct:
+        - name: entities
+          list:
+            - name: label
+              dtype: string
+            - name: description
+              dtype: string
+        - name: relations
+          list:
+            - name: label
+              dtype: string
+            - name: description
+              dtype: string
 configs:
   - config_name: default
     data_files:
-      - split: test
-        path: data/biored_test.jsonl
       - split: train
-        path: data/biored_train.jsonl
+        path: data/train.jsonl
       - split: validation
-        path: data/biored_validation.jsonl
+        path: data/validation.jsonl
+      - split: test
+        path: data/test.jsonl
 ---

data/train.jsonl

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:34de47b2869d84a5befa344fd09cba30ca1053852eeecdf1e70f3dff8de36d79
+size 11587950

schema.json

@@ -0,0 +1,62 @@
+{
+  "entities": [
+    {
+      "label": "gene or gene product",
+      "description": "A gene, protein, mRNA, or other gene product mentioned in biomedical text."
+    },
+    {
+      "label": "disease or phenotypic feature",
+      "description": "A disease, symptom, syndrome, or disease-related phenotypic feature."
+    },
+    {
+      "label": "chemical entity",
+      "description": "A chemical substance, drug, or other chemical compound."
+    },
+    {
+      "label": "organism taxon",
+      "description": "An organism or taxonomic species."
+    },
+    {
+      "label": "sequence variant",
+      "description": "A genomic or protein sequence variant, including substitutions, insertions, deletions, and other mutations."
+    },
+    {
+      "label": "cell line",
+      "description": "An established cell line used in biomedical research."
+    }
+  ],
+  "relations": [
+    {
+      "label": "association",
+      "description": "A general biological association that cannot be classified into a more specific relation type."
+    },
+    {
+      "label": "positive correlation",
+      "description": "A positive association in which one entity promotes, induces, increases, or is positively correlated with the other."
+    },
+    {
+      "label": "negative correlation",
+      "description": "A negative association in which one entity inhibits, suppresses, treats, decreases, or protects against the other."
+    },
+    {
+      "label": "bind",
+      "description": "A direct physical binding or molecular interaction between two entities."
+    },
+    {
+      "label": "comparison",
+      "description": "An explicit comparison between two entities without asserting another specific relation."
+    },
+    {
+      "label": "cotreatment",
+      "description": "A relation indicating that two chemicals or drugs are administered together as part of the same treatment."
+    },
+    {
+      "label": "drug interaction",
+      "description": "A pharmacodynamic interaction between two chemicals or drugs."
+    },
+    {
+      "label": "conversion",
+      "description": "A relation indicating that one chemical is converted or transformed into another chemical."
+    }
+  ]
+}