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Download scripts/conf_matrix/plot_diagonal_confusions_compact_legends.py from moiaraya/i-badas: direct link, hf CLI and curl.
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https://huggingface.co/datasets/moiaraya/i-badas/resolve/main/scripts/conf_matrix/plot_diagonal_confusions_compact_legends.py
- Command line
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hf download hf://datasets/moiaraya/i-badas/scripts/conf_matrix/plot_diagonal_confusions_compact_legends.py
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curl -L -o plot_diagonal_confusions_compact_legends.py https://huggingface.co/datasets/moiaraya/i-badas/resolve/main/scripts/conf_matrix/plot_diagonal_confusions_compact_legends.py
10.5 kB
| #!/usr/bin/env python3 | |
| """Rebuild all 18 configurations from the supplied per_image CSV, using RGB GT. | |
| Generate four PNG figures: two comparisons with two triangle_legend placements. | |
| Requires numpy, pandas, matplotlib. No predictions or thresholds are modified. | |
| Run: python plot_diagonal_confusions_palette_v3.py | |
| """ | |
| from pathlib import Path | |
| import argparse,json,re | |
| import numpy as np | |
| import pandas as pd | |
| import matplotlib | |
| matplotlib.use('Agg') | |
| import matplotlib.pyplot as plt | |
| from matplotlib.patches import Polygon,Rectangle | |
| from matplotlib.colors import LinearSegmentedColormap,Normalize | |
| from matplotlib.cm import ScalarMappable | |
| NAMES=['Empty\nclean','Empty\ndirty','Non-empty'] | |
| MAP={'good':0,'nuisance':1,'residual':2} | |
| KEY=['scene_id','image_number'] | |
| BASE_FONT_SIZE=14 | |
| VIRIDIS_POINT=0.6 | |
| LEGEND_Y_OFFSET = -0.06 | |
| ROTATION = 20 | |
| def rebuild(path,out): | |
| d=pd.read_csv(path,dtype={'scene':str,'image_id':str}) | |
| required=['family','model','variant','scene','image_id','ground_truth_class','predicted_class'] | |
| if not set(required)<=set(d): raise ValueError('Missing columns') | |
| d['scene_id']=d.scene.str.extract(r'^(\d+)')[0].astype(int) | |
| d['image_number']=d.image_id.map(lambda s:int(Path(str(s)).stem)) | |
| d['variant']=d.variant.replace({'faithful':'unmasked'}) | |
| if not d.variant.isin(['masked','unmasked']).all(): raise ValueError('Unknown variant') | |
| d['original_gt']=d.ground_truth_class.map(MAP); d['prediction']=d.predicted_class.map(MAP) | |
| if d[['original_gt','prediction']].isna().any().any(): raise ValueError('Unknown class label') | |
| if d.duplicated(['family','model','variant']+KEY).any(): raise ValueError('Duplicate per_configuration image IDs') | |
| rgb=d[d.family.str.lower().eq('rgb')] | |
| if rgb.empty: raise ValueError('No RGB ground truth') | |
| if rgb.groupby(KEY).original_gt.nunique().gt(1).any(): raise ValueError('RGB ground truth conflicts across configurations') | |
| reference=rgb[KEY+['original_gt']].drop_duplicates(KEY).rename(columns={'original_gt':'rgb_gt'}) | |
| reference_set=set(map(tuple,reference[KEY].values)) | |
| for config,g in d.groupby(['family','model','variant']): | |
| if set(map(tuple,g[KEY].values))!=reference_set: raise ValueError('Image cohort differs for '+str(config)+'; no silent dropping allowed') | |
| d=d.merge(reference,on=KEY,validate='many_to_one') | |
| assert len(d)==len(pd.read_csv(path,usecols=['model'])) | |
| d['gt_changed']=d.original_gt.ne(d.rgb_gt) | |
| assert np.array_equal(d.prediction.values,d.predicted_class.map(MAP).values) | |
| matrices={}; rows=[]; audit=[] | |
| expected=np.bincount(reference.rgb_gt,minlength=3) | |
| for (family,model,var),g in d.groupby(['family','model','variant']): | |
| a=np.zeros((3,3),dtype=np.int64); np.add.at(a,(g.rgb_gt.to_numpy(dtype=int),g.prediction.to_numpy(dtype=int)),1) | |
| assert np.array_equal(a.sum(axis=1),expected) | |
| matrices[(model,var)]=a | |
| audit.append(dict(family=family,model=model,variant=var,ground_truth_reassigned=int(g.gt_changed.sum()),predictions_changed=0)) | |
| for r in range(3): | |
| for c in range(3): rows.append(dict(family=family,model=model,variant=var,gt_class=list(MAP)[r],predicted_class=list(MAP)[c],count=int(a[r,c]),row_percent=float(100*a[r,c]/expected[r]) if expected[r] else None)) | |
| pd.DataFrame(rows).to_csv(out/'rebuilt_all_18_confusion_counts.csv',index=False) | |
| pd.DataFrame(audit).to_csv(out/'ground_truth_correction_audit.csv',index=False) | |
| d.to_csv(out/'per_image_predictions_rgb_ground_truth.csv',index=False) | |
| report={'configurations':len(matrices),'rgb_class_support':dict(zip(list(MAP),map(int,expected))),'ground_truth_reassignments_by_family':d.groupby('family').gt_changed.sum().astype(int).to_dict(),'prediction_changes':0,'identical_image_cohorts':True} | |
| (out/'validation_report.json').write_text(json.dumps(report,indent=2)) | |
| print(json.dumps(report,indent=2)); print(pd.DataFrame(audit).to_string(index=False)) | |
| return matrices | |
| def arrays(a,margins): | |
| n=4 if margins else 3; count=np.full((n,n),np.nan); count[:3,:3]=a; support=a.sum(axis=1) | |
| pct=np.full((n,n),np.nan) | |
| for r in range(3): | |
| if support[r]: pct[r,:3]=a[r]/support[r] | |
| if margins: | |
| count[:3,3]=support-np.diag(a); count[3,:3]=a.sum(axis=0)-np.diag(a) | |
| for r in range(3): | |
| if support[r]: pct[r,3]=count[r,3]/support[r]; pct[3,r]=count[3,r]/support[r] | |
| return count,pct | |
| def panel(ax,a,b,title,args,cmap,scale): | |
| ca,pa=arrays(a,not args.no_margins); cb,pb=arrays(b,not args.no_margins); n=len(ca) | |
| for r in range(n): | |
| for c in range(n): | |
| if r==3 and c==3: | |
| ax.add_patch(Rectangle((c,r),1,1,facecolor='white',edgecolor='#aaaaaa',lw=.6)); continue | |
| for count,pct,vertices,x,y in [(ca,pa,[(c,r),(c+1,r),(c+1,r+1)],c+.74,r+.25),(cb,pb,[(c,r),(c,r+1),(c+1,r+1)],c+.26,r+.75)]: | |
| p=pct[r,c]; ax.add_patch(Polygon(vertices,facecolor=cmap(scale(p)) if np.isfinite(p) else '#eeeeee',edgecolor='none')) | |
| text=f'{p:.2f}' if np.isfinite(p) else 'N/A' | |
| ax.text(x,y,text,ha='center',va='center',fontsize=BASE_FONT_SIZE,color='black',linespacing=1.2) | |
| ax.plot([c,c+1],[r,r+1],color='#777777',lw=.65); ax.add_patch(Rectangle((c,r),1,1,fill=False,edgecolor='#aaaaaa',lw=.65)) | |
| if n==4: | |
| ax.plot([3,3],[0,4],color='#555555',lw=1.2); ax.plot([0,4],[3,3],color='#555555',lw=1.2) | |
| ax.set(xlim=(0,n),ylim=(n,0),aspect='equal') | |
| ax.set_xticks(np.arange(n)+.5,NAMES+(['FN'] if n==4 else [])); ax.set_yticks(np.arange(n)+.5,NAMES+(['FP'] if n==4 else [])) | |
| ax.set_xlabel('Predicted class',labelpad=10,fontweight='bold') | |
| ax.set_ylabel('True class',labelpad=10,fontweight='bold') | |
| ax.set_title(title,pad=15,fontsize=BASE_FONT_SIZE+3,fontweight='bold') | |
| ax.tick_params(length=0,pad=7,labelsize=BASE_FONT_SIZE-1) | |
| for sp in ax.spines.values(): sp.set_visible(False) | |
| ax.grid(False) | |
| def triangle_key(fig,center,width,labels,cmap,y=.035,height=.115): | |
| key=fig.add_axes([center-width/2,y,width,height]) | |
| key.set_xlim(0,6);key.set_ylim(1,0);key.axis('off') | |
| x,y,w,h=2.60,.10,.80,.80 | |
| key.add_patch(Polygon([(x,y),(x+w,y),(x+w,y+h)],facecolor='white',edgecolor='none')) | |
| key.add_patch(Polygon([(x,y),(x,y+h),(x+w,y+h)],facecolor='black',edgecolor='none')) | |
| key.add_patch(Rectangle((x,y),w,h,fill=False,edgecolor='black',lw=.8)) | |
| key.plot([x,x+w],[y,y+h],color='black',lw=.8) | |
| key.annotate(labels[0],xy=(x+w*.74,y+h*.24),xytext=(3.72,.22),ha='left',va='center',fontsize=BASE_FONT_SIZE-2,arrowprops={'arrowstyle':'-','color':'#555555','lw':.65}) | |
| key.annotate(labels[1],xy=(x+w*.26,y+h*.76),xytext=(2.28,.78),ha='right',va='center',fontsize=BASE_FONT_SIZE-2,arrowprops={'arrowstyle':'-','color':'#555555','lw':.65}) | |
| return key | |
| def figure(panels,labels,path,args,cmap,scale,legend_location): | |
| fig=plt.figure(figsize=(13,6)) | |
| grid=fig.add_gridspec(1,4,width_ratios=[1,0.25,1,.045],left=.075,right=.93,bottom=.16,top=.89,wspace=.10) | |
| axes=[] | |
| for i,(a,b,title) in enumerate(panels): | |
| ax=fig.add_subplot(grid[0,i*2]);panel(ax,a,b,title,args,cmap,scale);axes.append(ax) | |
| names=['empty_clean','empty_dirty','non_empty'] | |
| xt=ax.get_xticks();yt=ax.get_yticks() | |
| if len(xt)>=3: | |
| old=[t.get_text() for t in ax.get_xticklabels()] | |
| ax.set_xticks(xt,names+old[3:], rotation=ROTATION, ha='right') | |
| if len(yt)>=3: | |
| old=[t.get_text() for t in ax.get_yticklabels()] | |
| ax.set_yticks(yt,names+old[3:]) | |
| cax=fig.add_subplot(grid[0,3]) | |
| cb=fig.colorbar(ScalarMappable(norm=scale,cmap=cmap),cax=cax,ticks=np.linspace(0,1,6)) | |
| cb.set_label('Standardized Conditional Probability',labelpad=12,fontweight='bold') | |
| cb.ax.set_yticklabels([f'{v:.1f}' for v in np.linspace(0,1,6)]) | |
| fig.canvas.draw() | |
| renderer=fig.canvas.get_renderer() | |
| boxes=[ax.get_tightbbox(renderer).transformed(fig.transFigure.inverted()) for ax in axes] | |
| footer_top=min(box.y0 for box in boxes) | |
| left=axes[0].get_position().x0;right=axes[1].get_position().x1 | |
| if legend_location=='under-scale': | |
| pos=cax.get_position();center=(pos.x0+pos.x1)/2 | |
| key=triangle_key(fig,center,.25,[v.replace(': ',':\n') for v in labels],cmap,y=footer_top+LEGEND_Y_OFFSET,height=.065) | |
| else: | |
| center=(left+right)/2 | |
| key=triangle_key(fig,center,.46,labels,cmap,y=footer_top+LEGEND_Y_OFFSET,height=.065) | |
| assert len(fig.axes)==4 | |
| assert abs((key.get_position().x0+key.get_position().x1)/2-center)<1e-10 | |
| path=path.with_name(path.name.replace('per_matrix','shared_neutral_legend').replace('under_scale','neutral_legend_under_scale')) | |
| fig.savefig(path,dpi=args.dpi,bbox_inches='tight',pad_inches=.04,facecolor='white') | |
| fig.savefig(path.with_suffix('.pdf'),bbox_inches='tight',pad_inches=.04,facecolor='white') | |
| plt.close(fig) | |
| def main(): | |
| p=argparse.ArgumentParser(description=__doc__) | |
| p.add_argument('--input',type=Path,default=Path(__file__).resolve().parent/'per_image_three_class_predictions_best_validation.csv') | |
| p.add_argument('--out',type=Path,default=None); p.add_argument('--rgb-model',default='AnomalyDINO'); p.add_argument('--multimodal-model',default='M3DM') | |
| p.add_argument('--no-margins',action='store_true'); p.add_argument('--dpi',type=int,default=400) | |
| args=p.parse_args(); out=args.out or args.input.parent/'diagonal_confusion_compact_legends_v6'; out.mkdir(parents=True,exist_ok=True) | |
| plt.rcParams.update({'font.family':'DejaVu Sans','font.size':BASE_FONT_SIZE,'text.color':'black','axes.labelcolor':'black','xtick.color':'black','ytick.color':'black','axes.facecolor':'white','figure.facecolor':'white'}) | |
| matrices=rebuild(args.input,out); rgb={v:matrices[(args.rgb_model,v)] for v in ['masked','unmasked']}; mm={v:matrices[(args.multimodal_model,v)] for v in ['masked','unmasked']} | |
| scale=Normalize(0,1,clip=True) | |
| viridis_color = plt.get_cmap('viridis')(VIRIDIS_POINT) | |
| cmap = LinearSegmentedColormap.from_list('white_to_viridis', ['white', viridis_color]) | |
| # Create pastel viridis colormap | |
| c_vals = plt.get_cmap('viridis')(np.linspace(0.1, 0.8, 256)) | |
| pastel_vals = c_vals * 0.4 + 0.6 | |
| pastel_vals[:, 3] = 1.0 | |
| cmap = LinearSegmentedColormap.from_list('pastel_viridis', pastel_vals) | |
| for placement in ['per-matrix','under-scale']: | |
| suffix=placement.replace('-','_') | |
| figure([(rgb[v],mm[v],v.capitalize()) for v in ['masked','unmasked']],['RGB: '+args.rgb_model,'Multimodal: '+args.multimodal_model],out/f'01_masked_vs_unmasked_{suffix}.png',args,cmap,scale,placement) | |
| figure([(rgb['masked'],rgb['unmasked'],'RGB | '+args.rgb_model),(mm['masked'],mm['unmasked'],'Multimodal | '+args.multimodal_model)],['Masked','Unmasked'],out/f'02_rgb_vs_multimodal_{suffix}.png',args,cmap,scale,placement) | |
| print('Created four PNG and four PDF figures with one neutral legend each, plus unchanged audit tables in',out.resolve()) | |
| if __name__=='__main__': main() |