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public static double normalizeLogProps(double[] logProps) { double logPropSum = DoubleArrays.logSum(logProps); if (logPropSum == Double.NEGATIVE_INFINITY) { double uniform = FastMath.log(1.0 / (double)logProps.length); for (int d = 0; d < logProps.length; d++) { l...
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public static double klDivergence(double[] p, double[] q) { if (p.length != q.length) { throw new IllegalStateException("The length of p and q must be the same."); } double delta = 1e-8; if (!Multinomials.isMultinomial(p, delta)) { throw new IllegalStateException(...
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public double[] toNativeArray() { final double[] arr = new double[getNumImplicitEntries()]; iterate(new FnIntDoubleToVoid() { @Override public void call(int idx, double val) { arr[idx] = val; } }); return arr; }
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private String getLabel(String key) { String label = StrUtil.getLabel("cwf.shell.about." + key.toString()); return label == null ? key : label; }
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public H2DataSource init() throws Exception { if (dbMode == DBMode.LOCAL) { String port = getPort(); if (port.isEmpty()) { server = Server.createTcpServer(); } else { server = Server.createTcpServer("-tcpPort", port); } ...
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private String getPort() { String url = getUrl(); int i = url.indexOf("://") + 3; int j = url.indexOf("/", i); String s = i == 2 || j == -1 ? "" : url.substring(i, j); i = s.indexOf(":"); return i == -1 ? "" : s.substring(i + 1); }
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public String nextLine(Map<String,Object> extraClasses) { return mainClass.render(null, preprocessExtraClasses(extraClasses)); }
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public boolean isDuplicate(HelpTopic topic) { return ObjectUtils.equals(url, topic.url) && compareTo(topic) == 0; }
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protected void updateStatus() { if (!plugins.isEmpty()) { boolean disabled = isDisabled(); for (ElementPlugin container : plugins) { container.setDisabled(disabled); } } }
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private Enum getYesNoEnum(String answer) { return answer.equals("Y") ? YesNoDataType.Y_YES : YesNoDataType.N_NO; }
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public static IAction createAction(String label, String script) { return new Action(script, label, script); }
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public static ActionListener removeAction(BaseComponent component, String eventName) { ActionListener listener = getListener(component, eventName); if (listener != null) { listener.removeAction(); } return listener; }
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public static void disableAction(BaseComponent component, String eventName, boolean disable) { ActionListener listener = getListener(component, eventName); if (listener != null) { listener.setDisabled(disable); } }
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private static IAction createAction(String action) { IAction actn = null; if (!StringUtils.isEmpty(action)) { if ((actn = ActionRegistry.getRegisteredAction(action)) == null) { actn = ActionUtil.createAction(null, action); } } ret...
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public static ActionListener getListener(BaseComponent component, String eventName) { return (ActionListener) component.getAttribute(ActionListener.getAttrName(eventName)); }
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public static SSLContext buildSSLContext(HttpClientConfig config) throws IOException, GeneralSecurityException { KeyManagerFactory kmf = null; if (isSslKeyManagerEnabled(config)) { kmf = getKeyManagerFactory(config.getKeyStorePath(), new StoreProperties(config.getKeyStorePassword(), config.getK...
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private static InputStream getResourceAsStream(String path) throws IOException { if (StringUtils.isEmpty(path)) { return null; } // first try to load as file File file = new File(path); if (file.exists() && file.isFile()) { return new FileInputStream(file); } // if not a file f...
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private static String getFilenameInfo(String path) { if (StringUtils.isEmpty(path)) { return null; } try { return new File(path).getCanonicalPath(); } catch (IOException ex) { return new File(path).getAbsolutePath(); } }
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public static boolean isSslKeyManagerEnabled(HttpClientConfig config) { return StringUtils.isNotEmpty(config.getSslContextType()) && StringUtils.isNotEmpty(config.getKeyManagerType()) && StringUtils.isNotEmpty(config.getKeyStoreType()) && StringUtils.isNotEmpty(config.getKeyStorePath()); }
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public static boolean isSslTrustStoreEnbaled(HttpClientConfig config) { return StringUtils.isNotEmpty(config.getSslContextType()) && StringUtils.isNotEmpty(config.getTrustManagerType()) && StringUtils.isNotEmpty(config.getTrustStoreType()) && StringUtils.isNotEmpty(config.getTrustStorePath()...
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public static SSLContext createDefaultSSlContext() throws SSLInitializationException { try { final SSLContext sslcontext = SSLContext.getInstance(SSL_CONTEXT_TYPE_DEFAULT); sslcontext.init(null, null, null); return sslcontext; } catch (NoSuchAlgorithmException ex) { throw new SSLInit...
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private static void swap(byte[] array, int i, int j) { if (i != j) { byte valAtI = array[i]; array[i] = array[j]; array[j] = valAtI; numSwaps++; } }
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public String getUrl(String mockupType) { return mockupType == null ? null : mockupTypes.getProperty(mockupType); }
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@Override public Iterator<String> iterator() { List<String> list = new ArrayList<>(mockupTypes.stringPropertyNames()); Collections.sort(list, String.CASE_INSENSITIVE_ORDER); return list.iterator(); }
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public int lookupIndex(short value) { for (int i=0; i<elements.length; i++) { if (elements[i] == value) { return i; } } return -1; }
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public static short[] ensureCapacity(short[] elements, int size) { if (size > elements.length) { short[] tmp = new short[size*2]; System.arraycopy(elements, 0, tmp, 0, elements.length); elements = tmp; } return elements; }
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private PluginDefinition pluginById(String id) { PluginDefinition def = pluginRegistry.get(id); if (def == null) { throw new PluginException(EXC_UNKNOWN_PLUGIN, null, null, id); } return def; }
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public ElementMenuItem registerMenu(String path, String action) { ElementMenuItem menu = getElement(path, getDesktop().getMenubar(), ElementMenuItem.class); menu.setAction(action); return menu; }
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public void registerLayout(String path, String resource) throws Exception { Layout layout = LayoutParser.parseResource(resource); ElementUI parent = parentFromPath(path); if (parent != null) { layout.materialize(parent); } }
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private ElementUI parentFromPath(String path) throws Exception { if (TOOLBAR_PATH.equalsIgnoreCase(path)) { return getDesktop().getToolbar(); } String[] pieces = path.split(delim, 2); ElementTabPane tabPane = pieces.length == 0 ? null : findTabPane(pieces[0]); ...
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private ElementTabPane findTabPane(String name) throws Exception { ElementTabView tabView = getTabView(); ElementTabPane tabPane = null; while ((tabPane = tabView.getChild(ElementTabPane.class, tabPane)) != null) { if (name.equalsIgnoreCase(tabPane.getLabel())) { ...
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private String getDefaultPluginId() { if (defaultPluginId == null) { try { defaultPluginId = PropertyUtil.getValue("CAREWEB.INITIAL.SECTION", null); if (defaultPluginId == null) { defaultPluginId = ""; } ...
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public void setResources(Resource[] resources) throws IOException { clear(); for (Resource resource : resources) { addResource(resource); } }
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@Override public void afterInitialized(BaseComponent comp) { super.afterInitialized(comp); createLabel("default"); getEventManager().subscribe(EventUtil.STATUS_EVENT, this); }
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private Label getLabel(String pane) { Label lbl = root.findByName(pane, Label.class); return lbl == null ? createLabel(pane) : lbl; }
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private Label createLabel(String label) { Pane pane = new Pane(); root.addChild(pane); Label lbl = new Label(); lbl.setName(label); pane.addChild(lbl); adjustPanes(); return lbl; }
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public synchronized int addSubscriber(String eventName, IGenericEvent<T> subscriber) { List<IGenericEvent<T>> subscribers = getSubscribers(eventName, true); subscribers.add(subscriber); return subscribers.size(); }
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public synchronized int removeSubscriber(String eventName, IGenericEvent<T> subscriber) { List<IGenericEvent<T>> subscribers = getSubscribers(eventName, false); if (subscribers != null) { subscribers.remove(subscriber); if (subscribers.isEmpty()) { ...
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public boolean hasSubscribers(String eventName, boolean exact) { while (!StringUtils.isEmpty(eventName)) { if (hasSubscribers(eventName)) { return true; } else if (exact) { return false; } else { eventName = stripLevel(eventName...
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public synchronized Iterable<IGenericEvent<T>> getSubscribers(String eventName) { List<IGenericEvent<T>> subscribers = getSubscribers(eventName, false); return subscribers == null ? null : new ArrayList<>(subscribers); }
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public void invokeCallbacks(String eventName, T eventData) { String name = eventName; while (!StringUtils.isEmpty(name)) { Iterable<IGenericEvent<T>> subscribers = getSubscribers(name); if (subscribers != null) { for (IGenericEvent<T> subscri...
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private List<IGenericEvent<T>> getSubscribers(String eventName, boolean canCreate) { List<IGenericEvent<T>> subscribers = subscriptions.get(eventName); if (subscribers == null && canCreate) { subscribers = new LinkedList<>(); subscriptions.put(eventName, subscribers); ...
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private String stripLevel(String eventName) { int i = eventName.lastIndexOf('.'); return i > 1 ? eventName.substring(0, i) : ""; }
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public void start() { if (log.isDebugEnabled()) { log.debug("Executing ThreadEx [target=" + target.getClass().getName() + "]"); } ThreadUtil.startThread(this.thread); }
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protected void done() { try { page.getEventQueue().queue(event); } catch (Exception e) { log.error(e); } }
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public void setAttribute(String name, Object value) { synchronized (attribute) { attribute.put(name, value); } }
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public void revertImplementation(Page page) { Integer previousImplementedVersion = getPreviousImplementedVersion(page); if (previousImplementedVersion != null) { saveImplementedVersion(page, previousImplementedVersion); savePreviousImplementedVersion(page, null); } }
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public Integer getPreviousImplementedVersion(Page page) { ContentEntityObject entityObject = getContentEntityManager().getById(page.getId()); String value = getContentPropertyManager().getStringProperty(entityObject, PREVIOUS_IMPLEMENTED_VERSION); return value == null ? null : Integer.valueOf(va...
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public void savePreviousImplementedVersion(Page page, Integer version) { String value = version != null ? String.valueOf(version) : null; ContentEntityObject entityObject = getContentEntityManager().getById(page.getId()); getContentPropertyManager().setStringProperty(entityObject, PREVIOUS_IMPLE...
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public boolean canBeImplemented(Page page) { Integer implementedVersion = getImplementedVersion(page); return implementedVersion == null || page.getVersion() != implementedVersion; }
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public Integer getImplementedVersion(Page page) { ContentEntityObject entityObject = getContentEntityManager().getById(page.getId()); String value = getContentPropertyManager().getStringProperty(entityObject, IMPLEMENTED_VERSION); return value == null ? null : Integer.valueOf(value); }
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public void saveImplementedVersion(Page page, Integer version) { Integer previousImplementedVersion = getImplementedVersion(page); if (previousImplementedVersion != null && version != null && previousImplementedVersion == version) return; if (previousImplementedVersion != null) ...
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public boolean isImplementationDue(Page page) { int version = page.getVersion(); Integer implementedVersion = getImplementedVersion(page); if (implementedVersion != null) version = page.getVersion() == implementedVersion ? implementedVersion : implementedVersion + 1; Date d...
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public boolean getExecuteChildren(Page page) { ContentEntityObject entityObject = getContentEntityManager().getById(page.getId()); String value = getContentPropertyManager().getStringProperty(entityObject, EXECUTE_CHILDREN); return value == null ? false : Boolean.valueOf(value); }
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public static Document toDocument(BaseComponent root, String... excludedProperties) { try { CWF2XML instance = new CWF2XML(excludedProperties); instance.toXML(root, instance.doc); return instance.doc; } catch (ParserConfigurationException e) { return null;...
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public static String toXML(BaseComponent root, String... excludedProperties) { return XMLUtil.toString(toDocument(root, excludedProperties)); }
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private void toXML(BaseComponent root, Node parent) { TreeMap<String, String> properties = new TreeMap<>(String.CASE_INSENSITIVE_ORDER); Class<?> clazz = root.getClass(); ComponentDefinition def = root.getDefinition(); String cmpname = def.getTag(); if (def.getComponentClass() !...
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private boolean isExcluded(String name, String cmpname, String value) { return exclude.contains(excludeKey(name, null, value)) || exclude.contains(excludeKey(name, cmpname, value)); }
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private String excludeKey(String name, String cmpname, String value) { StringBuilder sb = new StringBuilder(cmpname == null ? "" : cmpname + "."); sb.append(name).append(value == null ? "" : "=" + value); return sb.toString(); }
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protected void putToRingBuffer(IQueueMessage<ID, DATA> msg) throws QueueException.QueueIsFull { if (msg == null) { throw new NullPointerException("Supplied queue message is null!"); } LOCK_PUT.lock(); try { if (!ringBuffer.tryPublishEvent((event, _seq) -> { ...
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protected IQueueMessage<ID, DATA> takeFromRingBuffer() { LOCK_TAKE.lock(); try { long l = consumedSeq.get() + 1; if (l <= knownPublishedSeq) { try { Event<ID, DATA> eventHolder = ringBuffer.get(l); try { ...
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protected void setHumanSubjectInvolvedAndVertebrateAnimalUsed(OtherResearchTrainingPlan researchTrainingPlan) { researchTrainingPlan.setHumanSubjectsInvolved(YesNoDataType.N_NO); researchTrainingPlan.setVertebrateAnimalsUsed(YesNoDataType.N_NO); for (ProposalSpecialReviewContract propSpecialRevi...
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public List<Pair<A, B>> getEntries() { List<Pair<A, B>> l = new ArrayList<>(size()); for (Map.Entry<A, B> x : map1.entrySet()) l.add(new Pair<>(x.getKey(), x.getValue())); return l; }
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public static void show(DialogControl<?> control) { DialogResponse<?> response = control.getLastResponse(); if (response != null) { control.callback(response); return; } Window root = null; try { Map<String, Object> a...
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public static SecurityContext getSecurityContext() { Session session = ExecutionContext.getSession(); @SuppressWarnings("resource") WebSocketSession ws = session == null ? null : session.getSocket(); return ws == null ? null : (SecurityContext) ws.getAttributes().get(Http...
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@Override public void logout(boolean force, String target, String message) { log.trace("Logging Out"); IContextManager contextManager = ContextManager.getInstance(); if (contextManager == null) { logout(target, message); } else { contextManager.reset(force, (...
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protected Boolean hasPersonnelBudget(KeyPersonDto keyPerson,int period){ List<? extends BudgetLineItemContract> budgetLineItemList = new ArrayList<>(); ProposalDevelopmentBudgetExtContract budget = s2SCommonBudgetService.getBudget(pdDoc.getDevelopmentProposal()); budgetLineItemList = budget.getB...
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public static <T> List<DialogResponse<T>> toResponseList(T[] responses, T[] exclusions, T dflt) { List<DialogResponse<T>> list = new ArrayList<>(); boolean forceDefault = dflt == null && responses.length == 1; for (T response : responses) { DialogResponse<T> rsp = new DialogResponse...
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private boolean isResponseType(String text, String label) { return label.equals(text) || StrUtil.formatMessage(label).equals(text); }
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public double get(long i) { if (i < 0 || i >= idxAfterLast) { return missingEntries; } return elements[SafeCast.safeLongToInt(i)]; }
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public String getName() { return getName(hasGivenNames() ? Collections.singletonList(givenNames.get(0)) : Collections.<String>emptyList()); }
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@Override public Resource[] getResources(String pattern) { Resource[] resources = cache.get(pattern); return resources == null ? internalGet(pattern) : resources; }
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private synchronized Resource[] internalGet(String pattern) { Resource[] resources = cache.get(pattern); if (resources != null) { return resources; } try { resources = resolver.getResources(pattern); } catch (IOException e) { throw MiscUtil.t...
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private void setQuestionnaireAnswers(CoverSheet coverSheet, ProjectNarrative projectNarrative) { List<? extends AnswerContract> answers = getPropDevQuestionAnswerService().getQuestionnaireAnswers(pdDoc.getDevelopmentProposal().getProposalNumber(),getNamespace(),getFormName()); for (AnswerContract answer : answer...
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@JsonProperty private Map<String, Object> getMetadata() { if (metadata == null) { metadata = new HashMap<>(); } return metadata; }
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public void setMetadata(String key, Object value) { if (value != null) { getMetadata().put(key, value); } }
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@Override public List<ProposalPersonContract> getNKeyPersons(List<? extends ProposalPersonContract> proposalPersons, int n) { ProposalPersonContract proposalPerson, previousProposalPerson; int size = proposalPersons.size(); for (int i = size - 1; i > 0; i--) { proposalPerson = p...
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@Override public ProposalPersonContract getPrincipalInvestigator(ProposalDevelopmentDocumentContract pdDoc) { ProposalPersonContract proposalPerson = null; if (pdDoc != null) { for (ProposalPersonContract person : pdDoc.getDevelopmentProposal().getProposalPersons()) { if ...
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@Override public List<ProposalPersonContract> getCoInvestigators(ProposalDevelopmentDocumentContract pdDoc) { List<ProposalPersonContract> investigators = new ArrayList<>(); if (pdDoc != null) { for (ProposalPersonContract person : pdDoc.getDevelopmentProposal().getProposalPersons()) { ...
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@Override public List<ProposalPersonContract> getKeyPersons(ProposalDevelopmentDocumentContract pdDoc) { List<ProposalPersonContract> keyPersons = new ArrayList<>(); if (pdDoc != null) { for (ProposalPersonContract person : pdDoc.getDevelopmentProposal().getProposalPersons()) { ...
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public static Window show(String dialog, Map<String, Object> args, boolean closable, boolean sizable, boolean show, IEventListener closeListener) { Window parent = new Window(); // Temporary parent in case materialize fails, so can cleanup. Page currentPage = ExecutionConte...
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private String loadfromFromFile(String queryName) throws IllegalStateException { try (final InputStream is = getClass().getResourceAsStream(scriptsFolder + queryName + ".sql");) { String sql = StringUtils.join(IOUtils.readLines(is, StandardCharsets.UTF_8), IOUtils.LINE_SEPARATOR); // Look for token...
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synchronized void open() throws IOException { if (opened) { return; } opened = true; CompletableFuture<Void> future = new CompletableFuture<>(); OnRegistration onRegistration = new OnRegistration(future); try { registrationId = face.registerPrefix(prefix, this, (OnRegiste...
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private boolean initPropertyService() { if (propertyService == null && appContext.containsBean("propertyService")) { propertyService = appContext.getBean("propertyService", IPropertyService.class); } return propertyService != null; }
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public static <T> Stream<T> of(Iterable<T> iterable) { checkNotNull(iterable); return new StreamImpl<T>(iterable); }
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@SafeVarargs public static <T> Stream<T> of(T... items) { checkNotNull(items); return new StreamImpl<T>(Arrays.asList(items)); }
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public static Layout parseResource(String resource) { int i = resource.indexOf(":"); if (i > 0) { String loaderId = resource.substring(0, i); ILayoutLoader layoutLoader = LayoutLoaderRegistry.getInstance().get(loaderId); if (layoutLoader != null) { S...
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public static Layout parseText(String xml) { try { return parseDocument(XMLUtil.parseXMLFromString(xml)); } catch (Exception e) { throw MiscUtil.toUnchecked(e); } }
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public static Layout parseStream(InputStream stream) { try (InputStream is = stream) { return parseDocument(XMLUtil.parseXMLFromStream(is)); } catch (Exception e) { throw MiscUtil.toUnchecked(e); } }
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public static Layout parseDocument(Document document) { return new Layout(instance.parseChildren(document, null, Tag.LAYOUT)); }
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private LayoutElement parseElement(Element node, LayoutElement parent) { LayoutElement layoutElement = newLayoutElement(node, parent, null); parseChildren(node, layoutElement, Tag.ELEMENT, Tag.TRIGGER); return layoutElement; }
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private String getRequiredAttribute(Element node, String name) { String value = node.getAttribute(name); if (value.isEmpty()) { throw new IllegalArgumentException("Missing " + name + " attribute on node: " + node.getTagName()); } return value; }
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private void parseTrigger(Element node, LayoutElement parent) { LayoutTrigger trigger = new LayoutTrigger(); parent.getTriggers().add(trigger); parseChildren(node, trigger, Tag.CONDITION, Tag.ACTION); }
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private void parseCondition(Element node, LayoutTrigger parent) { new LayoutTriggerCondition(parent, getDefinition(null, node)); }
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private void parseAction(Element node, LayoutTrigger parent) { new LayoutTriggerAction(parent, getDefinition(null, node)); }
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private Tag getTag(Element node, Tag... tags) { String name = node.getTagName(); String error = null; try { Tag tag = Tag.valueOf(name.toUpperCase()); int i = ArrayUtils.indexOf(tags, tag); if (i < 0) { error = "Tag '%s' is not valid ...
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private LayoutRoot parseUI(ElementBase root) { LayoutRoot ele = new LayoutRoot(); if (root instanceof ElementDesktop) { copyAttributes(root, ele); } parseChildren(root, ele); return ele; }
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private void copyAttributes(ElementBase src, LayoutElement dest) { for (PropertyInfo propInfo : src.getDefinition().getProperties()) { Object value = propInfo.isSerializable() ? propInfo.getPropertyValue(src) : null; String val = value == null ? null : propInfo.getPropertyType().getSeria...
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public static String readContent( File file ) throws IOException { Reader input = null; try { input = new FileReader( file ); return readContent( input ); } finally { closeQuietly( input ); } }
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public static void log(Marker marker, PerformanceMetrics metrics) { if (log.isDebugEnabled()) { log.debug(marker, getEndMetrics(metrics)); } }
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