Datasets:
test: V9_comment_elsewhere
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README.md
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@@ -147,13 +147,15 @@ We recommend using [DuckDB](https://duckdb.org/) to access this dataset.
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- **Curated by:** Net Zhang, Elizabeth Campolongo, Matthew Thompson, Jianyang Gu
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- **Homepage:** [BioCLIP Ecosystem Site](https://imageomics.github.io/bioclip-ecosystem/)
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- **Repository:**
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- **Paper:** [BioCLIP 2: Emergent Properties from Scaling Hierarchical Contrastive Learning](https://arxiv.org/abs/2505.23883)
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This repository contains pre-computed embedding vectors derived from the [TreeOfLife-200M](https://huggingface.co/datasets/imageomics/TreeOfLife-200M) dataset. Each row pairs a TreeOfLife-200M image (identified by `uuid`) with its embedding vector and associated taxonomic metadata. The data is sorted by taxonomy and stored in Parquet format with page indexes, enabling fast filtered access through Hugging Face.
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### Supported Tasks
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- **Feature extraction:** Retrieve pre-computed embedding vectors for any (taxonomic) subset without re-running the image embedding model.
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- **Taxonomy-filtered retrieval:** Query embeddings by kingdom, order, family, genus, or species using DuckDB with page-index predicate pushdown.
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- **Downstream training:** Use filtered embedding subsets for fine-tuning classifiers, training probes, or building custom indices.
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- **Curated by:** Net Zhang, Elizabeth Campolongo, Matthew Thompson, Jianyang Gu
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- **Homepage:** [BioCLIP Ecosystem Site](https://imageomics.github.io/bioclip-ecosystem/)
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- **Repository:** [TreeOfLife-Toolbox](https://github.com/Imageomics/treeoflife-toolbox)
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- **Paper:** [BioCLIP 2: Emergent Properties from Scaling Hierarchical Contrastive Learning](https://arxiv.org/abs/2505.23883)
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This repository contains pre-computed embedding vectors derived from the [TreeOfLife-200M](https://huggingface.co/datasets/imageomics/TreeOfLife-200M) dataset. Each row pairs a TreeOfLife-200M image (identified by `uuid`) with its embedding vector and associated taxonomic metadata. The data is sorted by taxonomy and stored in Parquet format with page indexes, enabling fast filtered access through Hugging Face.
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### Supported Tasks
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- **Feature extraction:** Retrieve pre-computed embedding vectors for any (taxonomic) subset without re-running the image embedding model.
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- **Taxonomy-filtered retrieval:** Query embeddings by kingdom, order, family, genus, or species using DuckDB with page-index predicate pushdown.
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- **Downstream training:** Use filtered embedding subsets for fine-tuning classifiers, training probes, or building custom indices.
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