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14.6 kB
| # Copyright 2026 Nikhil Raghavendra | |
| # SPDX-License-Identifier: Apache-2.0 | |
| """Steps 4-5: splits, caps, downsampling and the Hugging Face dataset layout. | |
| Usage:: | |
| python build/package.py BUILD_DIR candidates.parquet OUT_DIR | |
| [--target 150000] [--test 20000] [--val 5000] | |
| Order of operations (proposal): clusters, splits, 5 km leakage check, water and bare | |
| caps, then region-stratified downsampling *within each split*. Writes | |
| ``data/<split>-xxxxx-of-xxxxx.parquet`` (images as PNG bytes, typed with the | |
| ``huggingface`` schema metadata so ``load_dataset`` decodes them), | |
| ``MANIFEST.sha256`` and ``rejects/rejects.parquet``. | |
| """ | |
| from __future__ import annotations | |
| import argparse | |
| import hashlib | |
| import json | |
| import shutil | |
| from pathlib import Path | |
| from typing import TYPE_CHECKING, cast | |
| import numpy as np | |
| import pandas as pd | |
| import pyarrow as pa | |
| import pyarrow.parquet as pq | |
| from datasets import ClassLabel, Features, Image, Sequence, Value | |
| from sen_bridge_build import constants, meta, splits | |
| if TYPE_CHECKING: | |
| from collections.abc import Iterable | |
| #: Name of each split in the release, by internal name. | |
| SPLITS = {"train": "train", "val": "validation", "test": "test"} | |
| FEATURES = Features({ | |
| "id": Value("string"), | |
| "split": Value("string"), | |
| "cluster_id": Value("int32"), | |
| "region": Value("string"), | |
| "sar": Image(), | |
| "optical": Image(), | |
| "meta": Sequence(Value("float32"), length=7), | |
| "orbit": ClassLabel(names=["asc", "desc"]), | |
| "lat": Value("float32"), | |
| "lon": Value("float32"), | |
| "crs": Value("int32"), | |
| "t_radar": Value("timestamp[s, tz=UTC]"), | |
| "t_optical": Value("timestamp[s, tz=UTC]"), | |
| "dt_hours": Value("float32"), | |
| "doy": Value("int32"), | |
| "slope_std": Value("float32"), | |
| "elev_mean": Value("float32"), | |
| "water_frac_sar": Value("float32"), | |
| "water_frac_opt": Value("float32"), | |
| "vh_noise_frac": Value("float32"), | |
| "snow_score": Value("float32"), | |
| "haze_score": Value("float32"), | |
| "cloud_frac": Value("float32"), | |
| "rfi_score": Value("float32"), | |
| "flat_bright": Value("bool"), | |
| "clean": Value("bool"), | |
| "lulc_bare": Value("float32"), | |
| "lulc_rangeland": Value("float32"), | |
| "lulc_water": Value("float32"), | |
| }) | |
| _CANDIDATE_COLUMNS = [ | |
| "id", | |
| "sample_id", | |
| "season", | |
| "lat", | |
| "lon", | |
| "crs", | |
| "t_radar", | |
| "t_optical", | |
| "dt_hours", | |
| "doy", | |
| "tar", | |
| ] | |
| #: Order in which the splits are chosen: the benchmark's test set comes first. | |
| _CHOICE_ORDER = ("test", "val", "train") | |
| #: Pool sizes as a multiple of the target: room for the caps and the 5 km drops. | |
| _TEST_POOL_MARGIN = 1.15 | |
| _VAL_POOL_MARGIN = 1.7 | |
| _CELL_DEG = 1 # clusters are 1x1 degree cells (the seed-city list is not shipped) | |
| _CELL_STRIDE = 1000 | |
| _ROW_GROUP = 100 | |
| _HOURS_PER_DAY = 24 | |
| _DEG_PER_HOUR = 15 # of longitude | |
| _MINUTES_PER_HOUR = 60 | |
| _NOON = 12 | |
| _REFERENCE_DIRS = ( | |
| ("build", "scripts/build"), | |
| ("src/sen_bridge", "scripts/sen_bridge"), | |
| ("src/sen_bridge_build", "scripts/sen_bridge_build"), | |
| ("docs", "docs"), | |
| ("tests", "scripts/tests"), | |
| ("licenses", "licenses"), | |
| ) | |
| _REFERENCE_FILES = ("pyproject.toml", "LICENSE", "NOTICE", "README.md") | |
| def load_results(build_dir: Path) -> pd.DataFrame: | |
| """Read every part file of a build. | |
| Args: | |
| build_dir: Build directory containing ``parts/``. | |
| Returns: | |
| One row per fetched candidate: status, scores, and PNG bytes for kept crops. | |
| """ | |
| parts = [ | |
| pd.read_parquet(f) for f in sorted((build_dir / "parts").glob("*.parquet")) | |
| ] | |
| return pd.concat(parts, ignore_index=True) | |
| def kept_examples(results: pd.DataFrame, candidates: pd.DataFrame) -> pd.DataFrame: | |
| """Join kept rows with their metadata and add region, cluster and stratum. | |
| Args: | |
| results: Output of :func:`load_results`. | |
| candidates: Candidate table with the metadata columns. | |
| Returns: | |
| One row per kept crop with ``region``, ``cluster_id`` and ``stratum`` | |
| columns. | |
| """ | |
| meta_cols = candidates[_CANDIDATE_COLUMNS] | |
| df = results[results["status"] == "kept"].merge(meta_cols, on="id") | |
| df["region"] = list(map(splits.region_of, df["lat"], df["lon"])) | |
| cell_lat = np.floor(df["lat"] / _CELL_DEG).astype(int) | |
| cell_lon = np.floor(df["lon"] / _CELL_DEG).astype(int) | |
| df["cluster_id"] = cell_lat * _CELL_STRIDE + cell_lon | |
| hemisphere = np.where(df["lat"] >= 0, "_N", "_S") | |
| band = splits.latitude_band(df["lat"]).astype(str) | |
| df["stratum"] = df["region"] + hemisphere + "_L" + band | |
| return cast("pd.DataFrame", df.reset_index(drop=True)) # stubs lose the type | |
| def select_release( | |
| df: pd.DataFrame, | |
| target: dict[str, int], | |
| seed: int, | |
| ) -> tuple[pd.DataFrame, dict[str, int]]: | |
| """Choose the three splits in order of importance, keeping them 5 km apart. | |
| Test is chosen first, then validation, then train. After each split is chosen, | |
| the rows of the splits still to come that lie within 5 km of it are dropped, so | |
| the chosen split keeps its exact size and its composition never depends on the | |
| later choices. The water and bare-ground caps are applied to every split. | |
| Args: | |
| df: Rows with ``split`` and ``region`` columns (clusters already assigned). | |
| target: Wanted number of rows per split. | |
| seed: Seed of every random choice. | |
| Returns: | |
| The chosen rows, and the number of rows dropped for distance, keyed | |
| ``<later split>_near_<chosen split>``. | |
| """ | |
| mix = df["stratum"].value_counts(normalize=True) | |
| share = {str(k): float(v) for k, v in mix.items()} # the whole dataset's mix | |
| pools = {str(k): g for k, g in df.groupby("split")} | |
| chosen: dict[str, pd.DataFrame] = {} | |
| dropped: dict[str, int] = {} | |
| for i, name in enumerate(_CHOICE_ORDER): | |
| pool = pools[name] | |
| for member_of, cap in splits.CAPS: | |
| pool = splits.cap_share(pool, member_of(pool), cap, seed=seed) | |
| chosen[name] = splits.select_capped( | |
| pool, target[name], share, seed, region_col="stratum" | |
| ) | |
| for later in _CHOICE_ORDER[i + 1 :]: | |
| before = len(pools[later]) | |
| pools[later] = splits.drop_within(pools[later], chosen[name]) | |
| dropped[f"{later}_near_{name}"] = before - len(pools[later]) | |
| return pd.concat(chosen.values()), dropped | |
| def clean_flag(d: pd.DataFrame) -> pd.Series: | |
| """Flag the conservative ``clean`` subset. | |
| A crop is clean if the neural mask finds no cloud, shadow or no-data, the | |
| optical is textured (or confirmed open water) and its mean luminance is neither | |
| dark nor washed out. The flag is for analysis, never for selecting the | |
| benchmark. | |
| Args: | |
| d: Rows with the score columns. | |
| Returns: | |
| Boolean series aligned with ``d``. | |
| """ | |
| water = (d["water_frac_opt"] > constants.CLEAN_WATER_OPT) & ( | |
| d["lulc_water"] > constants.CLEAN_WATER_LULC | |
| ) | |
| low, high = constants.CLEAN_MEAN_RANGE | |
| return ( | |
| (d["sensei_cloud_frac"] == 0) | |
| & ((d["opt_std"] >= constants.CLEAN_MIN_STD) | water) | |
| & (d["opt_mean"] > low) | |
| & (d["opt_mean"] < high) | |
| ) | |
| def add_derived(df: pd.DataFrame, seed: int) -> pd.DataFrame: | |
| """Add orbit, conditioning vector, cloud share and clean flag, then shuffle. | |
| Orbit is derived from the local solar time of the radar pass (morning is | |
| descending), because the source has no orbit field. | |
| Args: | |
| df: Selected rows. | |
| seed: Seed of the shuffle. | |
| Returns: | |
| The rows with the derived columns, shuffled within each split. | |
| """ | |
| t = pd.to_datetime(df["t_radar"]) | |
| solar = ( | |
| t.dt.hour + t.dt.minute / _MINUTES_PER_HOUR + df["lon"] / _DEG_PER_HOUR | |
| ) % (_HOURS_PER_DAY) | |
| desc = (solar < _NOON).to_numpy() | |
| df["orbit"] = np.where(desc, "desc", "asc") | |
| vectors = meta.meta_vector( | |
| df["doy"], df["lat"], df["lon"], df["dt_hours"], desc | |
| ) | |
| meta_col = pd.Series(list(vectors), index=df.index, dtype=object) | |
| # pandas-stubs type ``assign`` too loosely; restore the DataFrame type. | |
| df = cast("pd.DataFrame", df.assign(meta=meta_col)) | |
| df["cloud_frac"] = df["sensei_cloud_frac"] | |
| df["clean"] = clean_flag(df) | |
| shuffled = df.sample(frac=1, random_state=seed) | |
| ordered = shuffled.sort_values("split", kind="stable").reset_index(drop=True) | |
| return cast("pd.DataFrame", ordered) # stubs lose the type | |
| def write_split( | |
| df: pd.DataFrame, | |
| split_name: str, | |
| out: Path, | |
| rows_per_shard: int, | |
| ) -> list[Path]: | |
| """Write one split as Parquet shards with the Hugging Face schema. | |
| Args: | |
| df: Rows of the split. | |
| split_name: Internal split name. | |
| out: Release directory. | |
| rows_per_shard: Rows per shard file. | |
| Returns: | |
| The files written. | |
| """ | |
| n = max(1, int(np.ceil(len(df) / rows_per_shard))) | |
| schema = FEATURES.arrow_schema | |
| files = [] | |
| for i in range(n): | |
| d = df.iloc[i * rows_per_shard : (i + 1) * rows_per_shard] | |
| special = { | |
| "sar": [{"bytes": b, "path": None} for b in d["sar_png"]], | |
| "optical": [{"bytes": b, "path": None} for b in d["optical_png"]], | |
| "meta": [list(map(float, m)) for m in d["meta"]], | |
| "orbit": (d["orbit"] == "desc").astype(int).tolist(), | |
| "t_radar": pd.to_datetime(d["t_radar"], utc=True).dt.floor("s"), | |
| "t_optical": pd.to_datetime(d["t_optical"], utc=True).dt.floor("s"), | |
| } | |
| arrays = [ | |
| pa.array( | |
| special[k] if k in special else d[k], type=schema.field(k).type | |
| ) | |
| for k in schema.names | |
| ] | |
| table = pa.Table.from_arrays(arrays, schema=schema) | |
| path = out / "data" / f"{SPLITS[split_name]}-{i:05d}-of-{n:05d}.parquet" | |
| path.parent.mkdir(parents=True, exist_ok=True) | |
| pq.write_table(table, path, row_group_size=_ROW_GROUP, compression="zstd") | |
| files.append(path) | |
| return files | |
| def copy_references(out: Path) -> None: | |
| """Copy the build code, docs and licences into the release for reference. | |
| ``load_dataset`` never runs these files. | |
| Args: | |
| out: Release directory. | |
| """ | |
| ignore = shutil.ignore_patterns("__pycache__", "*.pyc") | |
| for src, dst in _REFERENCE_DIRS: | |
| shutil.copytree(src, out / dst, dirs_exist_ok=True, ignore=ignore) | |
| for name in _REFERENCE_FILES: | |
| shutil.copy(name, out / "scripts" / name) | |
| # The dataset is CC BY 4.0, so the release root carries that licence; the code | |
| # in scripts/ keeps its own Apache-2.0 LICENSE (copied above). | |
| shutil.copy("licenses/LICENSE-CC-BY-4.0.txt", out / "LICENSE") | |
| shutil.copy("NOTICE", out / "NOTICE") | |
| for script in ("evaluate.py", "make_fid_stats.py"): | |
| shutil.copy(Path("scripts") / script, out / "scripts" / script) | |
| def write_manifest(out: Path, files: Iterable[Path]) -> None: | |
| """Write SHA-256 checksums of the data files and the rejects table. | |
| Args: | |
| out: Release directory. | |
| files: Data files to list. | |
| """ | |
| listed = sorted([*files, out / "rejects" / "rejects.parquet"]) | |
| lines = [ | |
| f"{hashlib.sha256(f.read_bytes()).hexdigest()} {f.relative_to(out)}\n" | |
| for f in listed | |
| ] | |
| (out / "MANIFEST.sha256").write_text("".join(lines), encoding="utf-8") | |
| def build_stats( | |
| results: pd.DataFrame, | |
| df: pd.DataFrame, | |
| files: list[Path], | |
| dropped: dict[str, int], | |
| ) -> dict[str, object]: | |
| """Summarise the release for the dataset card. | |
| Args: | |
| results: Every fetched candidate. | |
| df: The released rows. | |
| files: The data files written. | |
| dropped: Rows dropped for the 5 km rule, by split pair. | |
| Returns: | |
| Counts, shares and sizes, JSON-serialisable. | |
| """ | |
| status = results["status"].value_counts() | |
| return { | |
| "candidates_fetched": len(results), | |
| "kept_by_filters": int((results["status"] == "kept").sum()), | |
| "rejects": {k: int(v) for k, v in status.items() if k != "kept"}, | |
| "final": df["split"].value_counts().to_dict(), | |
| "dropped_for_distance": dropped, | |
| "clean_share": float(df["clean"].mean()), | |
| "water_crops": float( | |
| (df["water_frac_opt"] > constants.WATER_CROP_FRAC).mean() | |
| ), | |
| "region_share": df["region"] | |
| .value_counts(normalize=True) | |
| .round(4) | |
| .to_dict(), | |
| "split_bytes": { | |
| k: sum(f.stat().st_size for f in files if f.name.startswith(v)) | |
| for k, v in SPLITS.items() | |
| }, | |
| "dt_le_24h_share": float((df["dt_hours"].abs() <= _HOURS_PER_DAY).mean()), | |
| } | |
| def main() -> None: | |
| """Build the release directory.""" | |
| parser = argparse.ArgumentParser(description=__doc__) | |
| parser.add_argument("build", type=Path) | |
| parser.add_argument("candidates", type=Path) | |
| parser.add_argument("out", type=Path) | |
| parser.add_argument("--target", type=int, default=170_000) | |
| parser.add_argument("--test", type=int, default=30_000) | |
| parser.add_argument("--val", type=int, default=15_000) | |
| parser.add_argument("--seed", type=int, default=0) | |
| parser.add_argument("--rows-per-shard", type=int, default=7000) | |
| args = parser.parse_args() | |
| out: Path = Path(args.out) | |
| out.mkdir(parents=True, exist_ok=True) | |
| results = load_results(Path(args.build)) | |
| rejects = results[results["status"] != "kept"][["id", "status"]] | |
| (out / "rejects").mkdir(exist_ok=True) | |
| rejects.rename(columns={"status": "reason"}).to_parquet( | |
| out / "rejects" / "rejects.parquet" | |
| ) | |
| candidates = pd.read_parquet(args.candidates) | |
| df = kept_examples(results, candidates) | |
| df["split"] = splits.assign_splits( | |
| df, | |
| test_rows=round(args.test * _TEST_POOL_MARGIN), | |
| val_rows=round(args.val * _VAL_POOL_MARGIN), | |
| seed=args.seed, | |
| ) | |
| target = {"train": args.target - args.val - args.test, "val": args.val} | |
| target["test"] = args.test | |
| df, dropped = select_release(df, target, args.seed) | |
| print("dropped for the 5 km rule:", dropped) | |
| df = add_derived(df.reset_index(drop=True), args.seed) | |
| files: list[Path] = [] | |
| for name in SPLITS: | |
| files += write_split( | |
| df[df["split"] == name], name, out, args.rows_per_shard | |
| ) | |
| copy_references(out) | |
| write_manifest(out, files) | |
| stats = build_stats(results, df, files, dropped) | |
| (out / "build_stats.json").write_text( | |
| json.dumps(stats, indent=2, default=int), encoding="utf-8" | |
| ) | |
| print(json.dumps(stats, indent=2, default=int)) | |
| if __name__ == "__main__": | |
| main() | |