Add tue-aaa README + pipeline(s) from accepted_submissions
Browse files- tue-aaa/README.md +77 -0
- tue-aaa/pipeline.yaml +34 -0
tue-aaa/README.md
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---
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pretty_name: "OpenH-RF — TU/e PULS/e — Abdominal Aortic Aneurysm (C5-2v) channel data"
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license: cc-by-4.0
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task_categories:
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- image-to-image
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tags:
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- ultrasound
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- rf
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- openh-rf
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- beamforming
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- motion-estimation
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- abdominal-aortic-aneurysm
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- curved-array
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language:
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- en
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---
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# Abdominal Aortic Aneurysm (AAA) curved-array channel data
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## Dataset Description
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This dataset contains ultrasound channel data acquired in vivo from patients with abdominal aortic aneurysms (AAA). The dataset consists of ultrafast acquisitions obtained using a curved array ultrasound transducer operating in diverging wave transmission mode with a Verasonics system. The data capture raw radio frequency (RF) channel signals at high frame rates, enabling access to the full spatiotemporal information.
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## Dataset Contributor(s)
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PULS/e group
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Department of Biomedical Engineering
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Eindhoven University of Technology
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contact: Hans-Martin Schwab (h.schwab@tue.nl)
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## Dataset Creation Date
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July 2026
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## License / Terms of Use
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CC BY 4.0.
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## Intended Usage
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Advanced beamforming
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Motion estimation
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## Dataset Characterization
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- **Data collection method:** clinical
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- **Acquisition system:** Verasonics Vantage, C5-2v curved array, 128 elements, center frequency 3.6 MHz
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- **Transmit sequence:** 15 steered diverging waves (polar angles −12° … +12°)
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## Dataset Format
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zea file format. Subject metadata is stored under `metadata/subject` (`age`, `sex`, `bmi`); attribution under `metadata/credit`.
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## Dataset Quantification
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- **Samples / frames:** 500 acquisitions
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- **Total size on disk:** 5.7 GB
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| Field | Shape | dtype | Units | Description |
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|---|---|---|---|---|
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| `raw_data` | `(N_frames, N_tx, N_ax, N_el, 1)` | int16 | — | Raw RF channel data |
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## Subject Metadata
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Patients are dominantly male, aged 63–90, and scanned in the Netherlands.
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## Data Validation
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A `zea.Pipeline` (cast → axial window → demodulate → DAS beamforming → envelope detection → normalization → log compression) is defined in `pipeline.yaml`. Run `reconstruct.py` to reproduce the reference B-mode image (`AAApatient01_bmode.png`).
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## Known Issues
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N/A
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## Ethical Considerations
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The experiment protocol was approved by the local ethics review board of the Catharina Hospital Eindhoven on 22 December 2023 (ID-number: nWMO-2023.115) and written informed consent was obtained from each patient prior to scanning.
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tue-aaa/pipeline.yaml
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pipeline:
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operations:
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- name: keras.ops.cast
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params:
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dtype: float32
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- name: apply_window
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params:
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size: 64
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end: 96
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- demodulate
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- name: beamform
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params:
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num_patches: 200
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- envelope_detect
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- name: normalize
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params:
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output_range:
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- 0.0
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- 1.0
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- log_compress
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parameters:
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grid_size_x: 580
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grid_size_z: 600
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xlims:
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- -0.1
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- 0.1
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zlims:
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- 0.0065
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- 0.18
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f_number: 1.0
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dynamic_range:
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- -60
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- 0
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apply_lens_correction: true
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