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Add tue-aaa README + pipeline(s) from accepted_submissions

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  1. tue-aaa/README.md +77 -0
  2. tue-aaa/pipeline.yaml +34 -0
tue-aaa/README.md ADDED
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+ ---
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+ pretty_name: "OpenH-RF — TU/e PULS/e — Abdominal Aortic Aneurysm (C5-2v) channel data"
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+ license: cc-by-4.0
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+ task_categories:
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+ - image-to-image
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+ tags:
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+ - ultrasound
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+ - rf
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+ - openh-rf
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+ - beamforming
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+ - motion-estimation
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+ - abdominal-aortic-aneurysm
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+ - curved-array
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+ language:
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+ - en
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+ ---
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+
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+ # Abdominal Aortic Aneurysm (AAA) curved-array channel data
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+
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+ ## Dataset Description
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+
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+ This dataset contains ultrasound channel data acquired in vivo from patients with abdominal aortic aneurysms (AAA). The dataset consists of ultrafast acquisitions obtained using a curved array ultrasound transducer operating in diverging wave transmission mode with a Verasonics system. The data capture raw radio frequency (RF) channel signals at high frame rates, enabling access to the full spatiotemporal information.
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+
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+ ## Dataset Contributor(s)
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+
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+ PULS/e group
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+ Department of Biomedical Engineering
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+ Eindhoven University of Technology
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+ contact: Hans-Martin Schwab (h.schwab@tue.nl)
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+
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+ ## Dataset Creation Date
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+
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+ July 2026
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+
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+ ## License / Terms of Use
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+
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+ CC BY 4.0.
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+
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+ ## Intended Usage
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+
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+ Advanced beamforming
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+ Motion estimation
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+
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+ ## Dataset Characterization
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+
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+ - **Data collection method:** clinical
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+ - **Acquisition system:** Verasonics Vantage, C5-2v curved array, 128 elements, center frequency 3.6 MHz
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+ - **Transmit sequence:** 15 steered diverging waves (polar angles −12° … +12°)
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+
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+ ## Dataset Format
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+
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+ zea file format. Subject metadata is stored under `metadata/subject` (`age`, `sex`, `bmi`); attribution under `metadata/credit`.
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+
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+ ## Dataset Quantification
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+
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+ - **Samples / frames:** 500 acquisitions
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+ - **Total size on disk:** 5.7 GB
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+
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+ | Field | Shape | dtype | Units | Description |
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+ |---|---|---|---|---|
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+ | `raw_data` | `(N_frames, N_tx, N_ax, N_el, 1)` | int16 | — | Raw RF channel data |
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+
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+ ## Subject Metadata
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+
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+ Patients are dominantly male, aged 63–90, and scanned in the Netherlands.
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+
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+ ## Data Validation
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+
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+ A `zea.Pipeline` (cast → axial window → demodulate → DAS beamforming → envelope detection → normalization → log compression) is defined in `pipeline.yaml`. Run `reconstruct.py` to reproduce the reference B-mode image (`AAApatient01_bmode.png`).
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+
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+ ## Known Issues
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+
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+ N/A
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+
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+ ## Ethical Considerations
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+
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+ The experiment protocol was approved by the local ethics review board of the Catharina Hospital Eindhoven on 22 December 2023 (ID-number: nWMO-2023.115) and written informed consent was obtained from each patient prior to scanning.
tue-aaa/pipeline.yaml ADDED
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+ pipeline:
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+ operations:
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+ - name: keras.ops.cast
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+ params:
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+ dtype: float32
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+ - name: apply_window
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+ params:
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+ size: 64
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+ end: 96
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+ - demodulate
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+ - name: beamform
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+ params:
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+ num_patches: 200
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+ - envelope_detect
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+ - name: normalize
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+ params:
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+ output_range:
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+ - 0.0
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+ - 1.0
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+ - log_compress
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+ parameters:
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+ grid_size_x: 580
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+ grid_size_z: 600
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+ xlims:
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+ - -0.1
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+ - 0.1
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+ zlims:
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+ - 0.0065
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+ - 0.18
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+ f_number: 1.0
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+ dynamic_range:
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+ - -60
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+ - 0
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+ apply_lens_correction: true