The diverging-wave apex (the virtual source behind the array) was derived in each reconstruct.py from |focus_distances|, with a fallback branch. It is a fixed acquisition parameter -- 0.022 m for the diverging sequence (clinical, phantom_flow, phantom_mp) and 0.05 m for saddle, constant across all 43 files -- so it belongs in the config next to zlims and polar_limits. The scripts now read it from there instead of rederiving it.
resolvestroke: sync data cards, pipelines and assets with GitHub
Syncs the Resolve Stroke data cards, pipelines and figures on the Hub with the
reviewed state in the OpenH-RF GitHub repo (open-h/OpenH-RF PR #8).
**Pipelines**
- `clinical/pipeline_PD_3d.yaml`, `phantom_flow/pipeline_PD_3d.yaml`: grid raised
from 160/64/64 to 200/80/80 (n_radial/n_azimuth/n_elevation, ~0.5 mm radial) and
the tissue high-pass wall filter from 50 Hz to 100 Hz. The reconstruction scripts
on GitHub load these configs directly, so the Hub copies need to match or the
scripts silently reconstruct at the old settings.
- `saddle/pipeline.yaml`: comment only. `zlims` is on-axis depth; zea's
`polar_pixel_grid` adds `distance_to_apex` to the radii itself, so the old note
saying reconstruct.py offsets the apex no longer described the code.
**`clinical/` layout**
The 20 clinical acquisitions share probe, sequence and file layout, so the data card
and pipelines move from `clinical/SP02-Left-2/` up to `clinical/`, with an inventory
table covering all 20. `clinical/SP02-…
- Tidy the pipeline YAMLs (7e726adfd8bd3e8ab397e8a4fb284fe20605c151)
- Ship the two configs the reconstruct scripts need (d330799806f927124f06b01ed0617f690271799c)
- Normalize line endings to LF (cce1ebbf5636b564fb362764eec038afbc1cd7d9)
- Remove the Python helpers from twente-microbubblesim (0fde458d1f28fe3ff3d6ba1ceac2a6cf0ee16411)
- Remove the last reconstruction script (5d49e4f4dc1eccd3cf2986a45e9cb493eb6ee017)
- add cross link to github (0715e04468208c71223097ca6ac292594882f6ce)
- Drop the comment from .gitattributes (33fd6aacd7e112ea169d1ca953c475e81362ca5a)
- Point data cards at pipeline.yaml and the merged reconstruct scripts (2de063e00e78dfe4f0acd302fa4ded18740f5a56)
- Lead the tue-carotid card with a rendered bifurcation loop (1df230e2f455ed02a31177b9e80eebba53424a29)
- Match the wpi card's code block to the formatter (cbe25eb94fa1b9405d40574ff354c8194b38b095)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
29 days ago
Simplify root README and standardize institution credits (#4)
