Syncs the stanford-murine card and pipelines on the Hub with GitHub.
- `README.md`: hero image with an italic caption under the title; Processing now leads with a `zea process --track` command; Data Validation rewritten; the "Scripts and Paths" section, which described the contributor's own repository, is removed.
- `pipeline_multifocal.yaml`, `pipeline_hadamard.yaml`, `pipeline_synthetic_aperture.yaml`: the `fir_filter` step is removed and `dynamic_range: [-60, 0]` added, so `zea process` can run them straight from the Hub. The probe-dependent FIR now lives in `reconstruct.py`, which reads these same files.
- `assets/hero.png`, `assets/main.png`: the hero figure (Rat3 liver over the ATS 549 phantom) and the main image.
The `reconstruct.py` changes in the same GitHub PR aren't hosted on the Hub, so they aren't part of this PR. `reconstruct.py` loads the pipelines from the Hub, so this PR and the GitHub PR should be merged together.
**GitHub PR:**
- [tristan-deep/OpenH-RF#48](https:/…
- vanderbilt: subject/id is the six-digit patient ID, without the view number (d82df6cea24a686a59a59d46b74c79078c3b45bd)
Co-authored-by: Oisín Nolan <oisinn@users.noreply.huggingface.co>
ulmshare: add hero and main images, sync data card with GitHub (#70)
- ulmshare: add hero and main images, sync data card with GitHub (df129dd107eb757aea029c61d9d359121e007887)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
- siemens-healthineers: sync data card, pipeline grid and figures with GitHub (b0576678b0c6e6191052982e07e5cb1f4987f7e5)
- siemens-healthineers: restructure the data card to the common layout (9dd31449e8eea69997a21b8eb3b9fe35a35d9ef1)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
- unc-openpros: note the licence conversion agreement in the data card (18a8a800b54ecd7c3d10ca30433845823ab04282)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
twente-vortexflow: sync data card, pipelines and figures with GitHub (#41)
- twente-vortexflow: sync data card, pipelines and figures with GitHub (f419a837b834657881ca9a519da8ee5b1d47d42e)
- twente-vortexflow: restructure the data card to the common layout (eed8ab5e83104a521f2e0fbc33230ebb2bf37ab2)
- twente-vortexflow: sync card, pipelines and figures with GitHub (GH#38) (39304038005c71f887752447b8704fd7b0937084)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
twente-cavitation: restructure the data card to the common layout (#58)
- twente-cavitation: restructure the data card to the common layout (b768e812baee6257238ae38c5a6f32adeaeb265e)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
twente-microbubblesim: restructure the data card to the common layout (#59)
- twente-microbubblesim: restructure the data card to the common layout (8be8399c2082f4f0a9e9154ae0469822dbedde2f)
- twente-microbubblesim: sync card, pipelines and figures with GitHub (GH#37) (cbfbe3a727e122073f7eec69b63a1eae76eb6030)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
21 days ago
waterloo-muscle: sync data card, pipeline grid and figures with GitHub (#48)
- waterloo-muscle: sync data card, pipeline grid and figures with GitHub (a7e1ded1f8559883b5262a3aaeebd187112edce4)
- waterloo-muscle: restructure the data card to the common layout (0ba3ced829420f994bd903e7938670728ec444c7)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
waterloo-femoralvein (renamed from waterloo-largeartery): sync data card, pipeline grid and figures with GitHub (#47)
- waterloo-largeartery: sync data card, pipeline grid and figures with GitHub (0c07c4f00c05c1ed92f4e3903811b1765dff5e1c)
- waterloo-largeartery: restructure the data card to the common layout (72bb2eebe4ce2ff4d7e970110de29feb7911fbcf)
- Rename waterloo-largeartery to waterloo-femoralvein; sync card, pipeline and figures with GitHub (adb26313fc6b107cc9ca684d07159a50fe74e44e)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
waterloo-carotid: sync data card, pipeline grid and figures with GitHub (#46)
- waterloo-carotid: sync data card, pipeline grid and figures with GitHub (1baf560800092d274496c65172d2205fe5bac59e)
- waterloo-carotid: restructure the data card to the common layout (dfcd9d9999c5669a8dce9b5f43bbca7cdf56f4e3)
- waterloo-carotid: sync card and figures with GitHub #30 (cfcf9e207a022fa40417c573cfb9e06c5954d952)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
weizmann-sampl: list individual contributors (#69)
- unc-openpros: sync data card and figures with GitHub (f9c15289fada6d7077a4a18aa4435701ae06b45a)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
oslo: add hero and main images for the collection and each sub-dataset (#66)
- oslo: add hero and main images for the collection and each sub-dataset (4acc49b0004a526836181e565ac661320a561cdb)
- oslo: add a zea process pipeline.yaml per sub-dataset (448f9a72861d3293b8c83c7a31db8f05069c95ef)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
unc-liver: add the split CSV, center the hero image (#67)
- unc-liver: add the split CSV, center the hero image (1e16c3163f91afac37be07752bb3a62b05a0ca37)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
tue-cardiac: sync data card and gallery figures with GitHub, replace references/ with assets/ (#26)
- tue-cardiac: sync data card and gallery figures with GitHub, replace references/ with assets/ (a4889c480ce3ea46ee8203be73cbb69939427639)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
- tumunich: restructure the data card to the common layout (070b2bfad0ecd1ce50373e9aba63258d5da15066)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
resolvestroke: sync data cards, pipelines and assets with GitHub (#20)
- resolvestroke: sync data cards, pipelines and assets with GitHub (1e64d10f1d1e3d2dbdf8d28f390e286c7c424c34)
- resolvestroke: pin distance_to_apex in the pipeline configs (c497b38dfc938609ca3362f6fa8edf69f21773c3)
- resolvestroke: restructure the data cards to the common layout (4d534cae11c46dcfe4c55229ef355c76b8a27056)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
technion: sync data cards and figures with GitHub (#24)
- technion: sync data cards and figures with GitHub (c72f7ebe38b02ef50e9fe63be86c8ea24072b850)
- technion: restructure the data cards to the common layout (421b2c507d006f4242ddf8db691244584f70c452)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
tel-aviv: sync data card, mouse_tumor pipeline and figures with GitHub (#37)
- tel-aviv: sync data card, mouse_tumor pipeline and figures with GitHub (1d1eabc13db7114c8b054107d40cefe6b3435f9b)
- tel-aviv: restructure the data card to the common layout (4289dd0ecd4cf01aa2d48f53921dd36d503c3458)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
colorado-boulder: restructure the data card to the common layout (#52)
- colorado-boulder: restructure the data card to the common layout (a83c4c70da10b7d90838743ca8a24c168c99e54f)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
politorino: sync data card and figures with GitHub (#35)
- politorino: sync data card and figures with GitHub (30a921e1238c41da9ba4d81f44d2816a98c0df65)
- politorino: restructure the data card to the common layout (f24578bbe5d782a3950b04aa1171d2b6172f6598)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
unc-liver: restructure the data card to the common layout (#61)
- unc-liver: restructure the data card to the common layout (1619271ba8ccfdaa5c27365ba20fc624439dc248)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
dartmouth-uct: sync data card, pipeline and figures with GitHub (#32)
- dartmouth-uct: sync data card, pipeline and figures with GitHub (57c638b37e49e2d51508a8a3a2ab9ec2b8ece92b)
- dartmouth-uct: restructure the data card to the common layout (5dbd617cdfc8a51d9afa59f4bc2309a87a8fd57f)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
concordia: sync data card and pipeline grid parameters with GitHub (#31)
- concordia: sync data card and pipeline grid parameters with GitHub (f9cc1196fae6ff28acce09606be23be0195d9846)
- concordia: restructure the data card to the common layout (0181f2eb03bdd45df116a2fee037d283bc3c7ef8)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
stanford-murine: restructure the data card to the common layout (#55)
- stanford-murine: restructure the data card to the common layout (c3421fd4dd3d1821ace6ab7a616f2a31cbde286b)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
unc-openpros: sync data card and main image with GitHub (#27)
- unc-openpros: sync data card and main image with GitHub (f8bb045bd34761acdd86022d6e8fee46de2f713f)
- unc-openpros: drop references to the unshipped convert.py (1f6cbfbab0e86892df88905e92843106a19bc7df)
- unc-openpros: add the card frontmatter and the hero image (011574b89902e8522c7c07a01461504a52ee94fd)
- unc-openpros: restructure the data card to the common layout (b1d0fecb98dab2c4961cdf229a51e3ad38763ab1)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
wpi: sync data card and figures with GitHub (#63)
- wpi: sync data card and figures with GitHub (80b5d71131a1ca152ff852a8c76ee1f73fce1b3c)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
strasbourg-basel: sync data card and figures with GitHub (#25)
- strasbourg-basel: sync data card and figures with GitHub (1ec09ff23d595709bd8e01ebf15435c87fcc555d)
- strasbourg-basel: drop the remaining checkout-only links, add two reference figures (44a911fc739ab1f99c125a29e37ab1f86a9189c7)
- strasbourg-basel: restructure the data card to the common layout (99861c41afeae46c98c518bba9d3dc29b6f4c4ba)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
oslo: restructure the data cards to the common layout (#54)
- oslo: restructure the data cards to the common layout (39f1b50dafe8e6b99cbc37373c402e69a9323cc7)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
mosaic-intelligence: sync data card and per-acquisition figures with GitHub (#33)
- mosaic-intelligence: sync data card and per-acquisition figures with GitHub (8e036fa091b1936f88738e3dbbac2aa9075f7255)
- mosaic-intelligence: restructure the data card to the common layout (d8f6098ef78676c5aa70cffaf8292cf227de068e)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
ubc: sync module_A and module_C cards, module_A pipeline and figures with GitHub (#42)
- ubc: sync module_A and module_C cards, module_A pipeline and figures with GitHub (05040e0ca93a504ced0a7c97ead62d373418122c)
- ubc: restructure the data cards to the common layout (2b93845fa692c0fde8cbadcf2c4abadde4fa20a3)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
ulmshare: restructure the data card to the common layout (#60)
- ulmshare: restructure the data card to the common layout (2f75960284fdee0dfe3a5ec2afd5d9fe29c79dc2)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
nv-raw2insights-us: restructure the data card to the common layout (#53)
- nv-raw2insights-us: restructure the data card to the common layout (79e6fea9950e64a8be64d3bc5e06552b5adbb4c4)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
us4us: sync data card and figures with GitHub (#45)
- us4us: sync data card and figures with GitHub (9db46e0640306d95da783b65af7cd85a51cec5f9)
- us4us: restructure the data card to the common layout (8e4a0a600e06a221a2f823e0894b6b17c04199d2)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
tue-aaa: sync data card, pipeline grid and figures with GitHub (#38)
- tue-aaa: sync data card, pipeline grid and figures with GitHub (fbae932c4d1078d3a155410afe00c67f6846badd)
- tue-aaa: restructure the data card to the common layout (89f9ecd4f6e65d54a27535358f59bcae94bdf88e)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
vanderbilt: sync data card and figures with GitHub (#23)
- vanderbilt: sync data card and figures with GitHub (999872be24adf4d38ecb0d55fd139c8d8c88a2b8)
- vanderbilt: restructure the data card to the common layout (a69c5feefd8a9620e2d9fa2e456525dafa5636c6)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
22 days ago
weizmann-sampl: sync data card and figures with GitHub (#50)
- weizmann-sampl: sync data card and figures with GitHub (8d85af6526bb1f090df6af3300cb4d208f1f974e)
- weizmann-sampl: restructure the data card to the common layout (03a537c6ea92e52cbb0bc8d9847c57c1fd2039c0)
- weizmann-sampl: add assets/main.png (6b024aa402bd1370d353c0b610da9e7262d6be09)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
tue-carotid: restructure the data card to the common layout (#56)
- tue-carotid: restructure the data card to the common layout (15bc6fe8c63216cf2785e0302e0651679afad71e)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
kaist-snubh-barreleye: sync pipeline.yaml, data card and main image with GitHub (#9)
- kaist-snubh-barreleye: fix pipeline.yaml (missing parameters, wrong dynamic range/aspect ratio) (e3afc47e186fe31674095adac4d0556b412a3a8f)
- kaist-snubh-barreleye: sync data card and main image with GitHub (afd413858eb6776cc29dd1d2b33d6b3cb044402c)
- kaist-snubh-barreleye: restructure the data card to the common layout (9b6abef5c8a71f45bacee7b8a1916422026d16d3)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
- tue-carotid: sync data card and main image with GitHub (49106c6c7355d28e46deda66e62dacf1c799b1c9)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
