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tristan-deep commited on
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ubc: sync module_A and module_C cards, module_A pipeline and figures with GitHub

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Syncs the two ubc module cards, the module_A pipeline and the figures on the Hub with the reviewed state on GitHub (open-h/OpenH-RF).

`module_A/pipeline.yaml` gains `scan_convert` and the parameters it needs. The 64 transmits span +/-1.088 rad, while the probe's stored `polar_limits` (+/-1.4144 rad) describe its full field of view, so scan-converting against the stored limits produces a sector wider than the one actually acquired; `polar_limits` and a 0.4 mm `resolution` are now set explicitly. The comment on `zlims` also records that zea reads `distance_to_apex` (10 mm) from the file and adds it to form `rho_range`.

Adds the example reconstruction each card now shows, `module_A/assets/module_A.png` and `module_C/assets/module_C.png`. The four remaining files are the reference outputs that produced them — a frame and a 25-frame loop for module_A, a scan-converted frame for module_C — plus `module_C/assets/main.png`, the release image. None of those four are embedded in the cards.

Both cards also get the same contributor list, in the same order, which they previously stated differently.

Files changed: 9.

```
+ ubc/module_A/assets/module_A.png
+ ubc/module_A/assets/reconstruct_1.83_p10_f00-f24.gif
+ ubc/module_A/assets/reconstruct_1.83_p10_f13.png
+ ubc/module_C/assets/main.png
+ ubc/module_C/assets/module_C.png
+ ubc/module_C/assets/reconstruct_f1306_bk_scanconverted.png
~ ubc/module_A/README.md
~ ubc/module_A/pipeline.yaml
~ ubc/module_C/README.md
```

ubc/module_A/README.md CHANGED
@@ -35,13 +35,15 @@ The files are physically delay-consistent and reconstruct with zea-native
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  scanline delay-and-sum. They are not recovered or measured scanner channel
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  data, and they must not be represented as such.
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  ## Dataset Contributors
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- University of British Columbia. Primary contact: Zongze Li
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- (`zongze@student.ubc.ca`). Proposed contributors retained from the original
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- Module A data card: Septimiu E. Salcudean, Robert Rohling, Qi Zeng, Tajwar Abrar
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- Aleef, Hamid Moradi, Mohammad Honarvar, Wanwen Chen, Zijian Wu, Yuxin Chen, Yu
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- Chung Lee, Zongze Li, Patrick Boyan Chen, and Michael Frew.
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  ## Dataset Creation Date
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@@ -219,6 +221,4 @@ validation sidecars are not included.
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  ## Ethical Considerations
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  The data are phantom acquisitions only. There are no human subjects, no PHI,
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- and no patient demographics. The phantom model is CIRS model 039 Shear Wave
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- Liver Fibrosis Phantom. Institutional data-release approval was confirmed in
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- the original contributor data card.
 
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  scanline delay-and-sum. They are not recovered or measured scanner channel
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  data, and they must not be represented as such.
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+ ![Example reconstruction](./assets/module_A.png)
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+
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  ## Dataset Contributors
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+ - **Organization:** The University of British Columbia (UBC), Department of
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+ Electrical and Computer Engineering and School of Biomedical Engineering.
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+ - **Dataset-preparation contact:** Zongze Li, zongze@student.ubc.ca.
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+ - **Contributors:** Zongze Li, Yu Chung Lee, Qi Zeng, Wanwen Chen, Zijian Wu,
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+ Yuxin Chen, Patrick Boyan Chen, Michael Frew, Tajwar Abrar Aleef, Hamid Moradi, Mohammad Honarvar, Septimiu E. Salcudean, Robert Rohling.
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  ## Dataset Creation Date
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  ## Ethical Considerations
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  The data are phantom acquisitions only. There are no human subjects, no PHI,
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+ and no patient demographics.
 
 
ubc/module_A/assets/module_A.png ADDED

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ubc/module_A/assets/reconstruct_1.83_p10_f00-f24.gif ADDED

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ubc/module_A/assets/reconstruct_1.83_p10_f13.png ADDED

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ubc/module_A/pipeline.yaml CHANGED
@@ -17,11 +17,13 @@ pipeline:
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  - 1.0
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  percentile: 99.5
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  - log_compress
 
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  parameters:
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  enable_scanline: true
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  grid_type: polar
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  # In scanline mode, zlims are depths along each transmit beam measured
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- # from its origin on the curved element surface.
 
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  zlims:
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  - 0.0001
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  - 0.100023
@@ -31,3 +33,10 @@ parameters:
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  - 0.0
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  f_number: 0.0
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  apply_lens_correction: false
 
 
 
 
 
 
 
 
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  - 1.0
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  percentile: 99.5
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  - log_compress
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+ - scan_convert
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  parameters:
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  enable_scanline: true
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  grid_type: polar
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  # In scanline mode, zlims are depths along each transmit beam measured
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+ # from its origin on the curved element surface. zea reads distance_to_apex
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+ # (10 mm) from the file and adds it to form rho_range for scan conversion.
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  zlims:
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  - 0.0001
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  - 0.100023
 
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  - 0.0
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  f_number: 0.0
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  apply_lens_correction: false
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+ # The 64 transmits span +/-1.088 rad. The probe's stored polar_limits
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+ # (+/-1.4144 rad) describe its full field of view, which would scan-convert
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+ # into a sector wider than the one actually acquired.
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+ polar_limits:
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+ - -1.088
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+ - 1.088
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+ resolution: 0.0004
ubc/module_C/README.md CHANGED
@@ -36,14 +36,15 @@ IQ using a custom scatterer model and assumed transmit/receive geometry. They
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  are not measured pre-beamforming channels. Modalities have temporal
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  synchronization only; no validated spatial registration is supplied.
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  ## Dataset Contributors
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  - **Organization:** The University of British Columbia (UBC), Department of
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  Electrical and Computer Engineering and School of Biomedical Engineering.
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  - **Dataset-preparation contact:** Zongze Li, zongze@student.ubc.ca.
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- - **Contributors:** Septimiu E. Salcudean, Robert Rohling, Qi Zeng,
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- Tajwar Abrar Aleef, Hamid Moradi, Mohammad Honarvar, Wanwen Chen, Zijian Wu,
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- Yuxin Chen, Yu Chung Lee, Zongze Li, Patrick Boyan Chen, and Michael Frew.
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  ## Dataset Creation Date
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  are not measured pre-beamforming channels. Modalities have temporal
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  synchronization only; no validated spatial registration is supplied.
38
 
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+ ![Example reconstruction](./assets/module_C.png)
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+
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  ## Dataset Contributors
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  - **Organization:** The University of British Columbia (UBC), Department of
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  Electrical and Computer Engineering and School of Biomedical Engineering.
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  - **Dataset-preparation contact:** Zongze Li, zongze@student.ubc.ca.
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+ - **Contributors:** Zongze Li, Yu Chung Lee, Qi Zeng, Wanwen Chen, Zijian Wu,
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+ Yuxin Chen, Patrick Boyan Chen, Michael Frew, Tajwar Abrar Aleef, Hamid Moradi, Mohammad Honarvar, Septimiu E. Salcudean, Robert Rohling.
 
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  ## Dataset Creation Date
50
 
ubc/module_C/assets/main.png ADDED

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ubc/module_C/assets/module_C.png ADDED

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ubc/module_C/assets/reconstruct_f1306_bk_scanconverted.png ADDED

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