Commit History
21 days ago
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vanderbilt: subject/id is the six-digit patient ID, without the view number
Verified signatureSets `metadata/subject/id` to the six-digit patient ID in the 164 in-vivo files in `data/Fundamental/` and `data/Harmonic/`. The files currently store `<subject_id>_<view_number>` (e.g. `118420_1`, `118420_2`), which is 82 distinct IDs for the README's 30 patients. Grouping by `subject/id` therefore treats every view as a different patient, and a subject-wise split leaks the same patient across folds. Source: the README ("Each dataset follows the naming convention of `subject_id`_`view_number`_`sequence_type`. `subject_id` is a six-digit random number. `view_number` distinguishes between multiple views acquired on the same subject."). The script checked that every stored ID is exactly the `<six digits>_<view>` prefix of its filename; stripping the view leaves 30 IDs, the README's patient count. The view number stays in the filename. `CIRS_validation/CIRS_fundamental.hdf5` (`id = "CIRS"`) is unchanged. Files changed: 164. Only `metadata/subject/id` was written, `raw_data` and all othe…d82df6c
23 days ago
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vanderbilt: sync data card and figures with GitHub (#23)
- vanderbilt: sync data card and figures with GitHub (999872be24adf4d38ecb0d55fd139c8d8c88a2b8) - vanderbilt: restructure the data card to the common layout (a69c5feefd8a9620e2d9fa2e456525dafa5636c6) Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>8044306
25 days ago
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vanderbilt: add anatomy annotation, and mark the CIRS scan as a phantom (#17)
- vanderbilt: add anatomy annotation, and mark the CIRS scan as a phantom (775816c1a94cd5468d424b0d4552c81d01fa14c5) Co-authored-by: Oisín Nolan <oisinn@users.noreply.huggingface.co>b7ce0ce
30 days ago
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Tidy the pipeline YAMLs (#5)
- Tidy the pipeline YAMLs (7e726adfd8bd3e8ab397e8a4fb284fe20605c151) - Ship the two configs the reconstruct scripts need (d330799806f927124f06b01ed0617f690271799c) - Normalize line endings to LF (cce1ebbf5636b564fb362764eec038afbc1cd7d9) - Remove the Python helpers from twente-microbubblesim (0fde458d1f28fe3ff3d6ba1ceac2a6cf0ee16411) - Remove the last reconstruction script (5d49e4f4dc1eccd3cf2986a45e9cb493eb6ee017) - add cross link to github (0715e04468208c71223097ca6ac292594882f6ce) - Drop the comment from .gitattributes (33fd6aacd7e112ea169d1ca953c475e81362ca5a) - Point data cards at pipeline.yaml and the merged reconstruct scripts (2de063e00e78dfe4f0acd302fa4ded18740f5a56) - Lead the tue-carotid card with a rendered bifurcation loop (1df230e2f455ed02a31177b9e80eebba53424a29) - Match the wpi card's code block to the formatter (cbe25eb94fa1b9405d40574ff354c8194b38b095) Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>69ae012
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OpenH-RF early access
Co-authored-by: tristan-deep <tristan-deep@users.noreply.huggingface.co> Co-authored-by: swpenninga <swpenninga@users.noreply.huggingface.co>bc70d9d
