Five HDF5 acquisitions are marked unsafe by ClamAV signature `Win.Exploit.CVE_2016_4332_1-6028013-0`. Investigation located the matching sequences inside Blosc-compressed ultrasound sample chunks, supporting false positives rather than malformed HDF5 object-header messages.
This PR losslessly recompresses only `tracks/track_0/data/raw_data` in those five files, switching Blosc from bitshuffle to byte shuffle. It retains Zstandard, compression level 7, original chunk dimensions, data types, dataset values, attributes, and paths. Other dataset filters are unchanged. The September 26 Vanderbilt subject-ID correction is preserved.
Validation:
- All dataset values compared against the current source files; numeric values checked byte-for-byte after decompression.
- All attributes, HDF5 data types, shapes, maxshapes, chunk sizes, fill values, and link kinds/destinations compared.
- Source SHA-256 hashes verified against the Hub, then rechecked before this commit.
- All five replacement fil…
21 days ago
vanderbilt: subject/id is the six-digit patient ID, without the view number (#74)
- vanderbilt: subject/id is the six-digit patient ID, without the view number (d82df6cea24a686a59a59d46b74c79078c3b45bd)
Co-authored-by: Oisín Nolan <oisinn@users.noreply.huggingface.co>
23 days ago
vanderbilt: sync data card and figures with GitHub (#23)
- vanderbilt: sync data card and figures with GitHub (999872be24adf4d38ecb0d55fd139c8d8c88a2b8)
- vanderbilt: restructure the data card to the common layout (a69c5feefd8a9620e2d9fa2e456525dafa5636c6)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
25 days ago
vanderbilt: add anatomy annotation, and mark the CIRS scan as a phantom (#17)
- vanderbilt: add anatomy annotation, and mark the CIRS scan as a phantom (775816c1a94cd5468d424b0d4552c81d01fa14c5)
Co-authored-by: Oisín Nolan <oisinn@users.noreply.huggingface.co>
- Tidy the pipeline YAMLs (7e726adfd8bd3e8ab397e8a4fb284fe20605c151)
- Ship the two configs the reconstruct scripts need (d330799806f927124f06b01ed0617f690271799c)
- Normalize line endings to LF (cce1ebbf5636b564fb362764eec038afbc1cd7d9)
- Remove the Python helpers from twente-microbubblesim (0fde458d1f28fe3ff3d6ba1ceac2a6cf0ee16411)
- Remove the last reconstruction script (5d49e4f4dc1eccd3cf2986a45e9cb493eb6ee017)
- add cross link to github (0715e04468208c71223097ca6ac292594882f6ce)
- Drop the comment from .gitattributes (33fd6aacd7e112ea169d1ca953c475e81362ca5a)
- Point data cards at pipeline.yaml and the merged reconstruct scripts (2de063e00e78dfe4f0acd302fa4ded18740f5a56)
- Lead the tue-carotid card with a rendered bifurcation loop (1df230e2f455ed02a31177b9e80eebba53424a29)
- Match the wpi card's code block to the formatter (cbe25eb94fa1b9405d40574ff354c8194b38b095)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
