Stores `tracks/track_0/data/raw_data` with shuffle + gzip (level 4) instead of Blosc in the four `data/Fundamental/` files that the Hub's ClamAV scan marks unsafe (`Win.Exploit.CVE_2016_4332_1-6028013-0`):
- `126987_3_Focused_Uncoded_TX.hdf5`
- `559277_2_Focused_Uncoded_TX.hdf5`
- `729304_2_Focused_Uncoded_TX.hdf5`
- `829312_1_Focused_Uncoded_TX.hdf5`
The matching bytes sit inside Blosc-compressed `raw_data` chunks, not in the HDF5 object headers the CVE is about, so this is a false positive (reported to ClamAV). Re-encoding with Blosc at another level or shuffle mode only clears some files (#82). gzip changes the chunk bytes completely and is the same fix as #83 for UBC `session_01_f0374.hdf5`.
Files changed: 4. Only the compression filter of `raw_data` changed. Its values, dtype, shape, chunk shape and fill value, every other dataset (still Blosc) and every attribute are untouched. The Sept 26 subject-ID fix (#74) is kept, since the files were rewritten from current `main`.
Check…
22 days ago
vanderbilt: subject/id is the six-digit patient ID, without the view number (#74)
- vanderbilt: subject/id is the six-digit patient ID, without the view number (d82df6cea24a686a59a59d46b74c79078c3b45bd)
Co-authored-by: Oisín Nolan <oisinn@users.noreply.huggingface.co>
24 days ago
vanderbilt: sync data card and figures with GitHub (#23)
- vanderbilt: sync data card and figures with GitHub (999872be24adf4d38ecb0d55fd139c8d8c88a2b8)
- vanderbilt: restructure the data card to the common layout (a69c5feefd8a9620e2d9fa2e456525dafa5636c6)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
26 days ago
vanderbilt: add anatomy annotation, and mark the CIRS scan as a phantom (#17)
- vanderbilt: add anatomy annotation, and mark the CIRS scan as a phantom (775816c1a94cd5468d424b0d4552c81d01fa14c5)
Co-authored-by: Oisín Nolan <oisinn@users.noreply.huggingface.co>
- Tidy the pipeline YAMLs (7e726adfd8bd3e8ab397e8a4fb284fe20605c151)
- Ship the two configs the reconstruct scripts need (d330799806f927124f06b01ed0617f690271799c)
- Normalize line endings to LF (cce1ebbf5636b564fb362764eec038afbc1cd7d9)
- Remove the Python helpers from twente-microbubblesim (0fde458d1f28fe3ff3d6ba1ceac2a6cf0ee16411)
- Remove the last reconstruction script (5d49e4f4dc1eccd3cf2986a45e9cb493eb6ee017)
- add cross link to github (0715e04468208c71223097ca6ac292594882f6ce)
- Drop the comment from .gitattributes (33fd6aacd7e112ea169d1ca953c475e81362ca5a)
- Point data cards at pipeline.yaml and the merged reconstruct scripts (2de063e00e78dfe4f0acd302fa4ded18740f5a56)
- Lead the tue-carotid card with a rendered bifurcation loop (1df230e2f455ed02a31177b9e80eebba53424a29)
- Match the wpi card's code block to the formatter (cbe25eb94fa1b9405d40574ff354c8194b38b095)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
