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. #Tweets SelMexico mex <- read.csv("m.csv", sep = ";", stringsAsFactors = FALSE) mex <- mex[1:435,] #Se eliminan todas las observaciones vacias mex$Sentiment <- factor(mex$Sentiment) #Conversion a factores de variable relevante mex$Sentiment str(mex) library(tm) #Limpieza datos txt = mex$Tweet.Text # remue...
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library(tidyverse) response = read_csv('/home/zhoylman/MCO/data/USFS/harvest_stats_rG.csv') response$`system:index` = NULL response_years = c('clim',paste0(c(0,seq(1:35)), '_NDVI')) ndvi = response[,response_years] %>% as.tibble() %>% mutate(site = 1:200) %>% gather("key", 'value', -clim, -site) %>% mutate(xt...
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##--------------- ## Reference Data ##--------------- ## Load "activity labels" and "features" files activity_labels<-read.table("./UCI HAR Dataset/activity_labels.txt") features<-read.table("./UCI HAR Dataset/features.txt") ##--------- ##Test Data ##--------- ## Load the "y_test", "subject_test" and "x_test" fi...
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###################################################################################### # Partitioning niche and neutral dynamics on community assembly ##################### # Mortara et al ###################################################################### ############################################################...
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# This is called point doubling, also invented for EC. ECdouble <- function(a){ Lam <- ((3*a[1]*a[1]+Acurve) * modinv((2*a[2]),Pcurve)) %% Pcurve x <- (Lam*Lam-2*a[1]) %% Pcurve y <- (Lam*(a[1]-x)-a[2]) %% Pcurve return (c(x,y)) }
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calcyourtax <- function(nordnet=NULL, degiro=NULL){ pacman::p_load(dplyr, tidyr, purrr, readr, stringr, lubridate, kableExtra) if(!is.null(nordnet)){ # Import Nordnet transaction data nordnet <- read.table(nordnet, sep=";", dec=",", header=T, stringsAsFactors = F) nordnet ...
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# # This is the server logic of a Shiny web application. You can run the # application by clicking 'Run App' above. # # Find out more about building applications with Shiny here: # # http://shiny.rstudio.com/ # library(shiny) library(readr) library(RColorBrewer) library(EBImage) pal = colorRampPalette(c("blue", ...
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context("rewind") library("jsonlite") test_that("rewind works with character input", { x <- '{"type":"Polygon","coordinates":[[[100.0,0.0],[101.0,0.0],[101.0,1.0],[100.0,1.0],[100.0,0.0]]]}' aa <- rewind(x) bb <- rewind(x, outer = FALSE) expect_is(aa, "json") expect_is(unclass(aa), "character") expect_ma...
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rm(list=ls()) library(data.table) library(dplyr) library(ggmap) library(ggplot2) options(digit=9) options(digits=9) ########################################################################################## ### ### ### ...
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LogLikelihood4Mixtures <- function(Data, Means, SDs, Weights, IsLogDistribution=Means*0){ # LogLikelihood <- LogLikelihood4Mixtures(Data,Means,SDs,Weights,IsLogDistribution) # berechnung der Loglikelihood fuer ein Mixture model: LogLikelihood = sum(log(PDFmixture)) # # INPUT # Data[1:n] Daten, deren Verteilung ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/cania.sub.ts.R \docType{data} \name{cania.sub.ts} \alias{cania.sub.ts} \title{Subset of the Caniapiscau River Daily Flows} \format{Formatted as a data.frame with the following columns: \itemize{ \item ID - Water Survey Canada Station ID...
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filepath = "part1_data_original/movie_graph_edge_list.txt" movie_network<-read.graph(filepath, format = "ncol",directed = FALSE) fpath1 <- "part1_data_original/actorid_movieid_map.txt" ori_actor_movie <- read.table(fpath1, header = FALSE, sep = '\t', col.names = c('actor_id','movie_id')) valid_actor_movie <- subset(or...
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library(FinancialInstrument) ### Name: make_spread_id ### Title: Construct a primary_id for a 'spread' 'instrument' from the ### primary_ids of its members ### Aliases: make_spread_id ### ** Examples ids <- c('VX_aug1','VX_U11') make_spread_id(ids, format='CY') make_spread_id(ids, format=FALSE) make_spread_id(c("...
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#' Set up available designs for NOWAC #' #' @return vector with available designs #' #' @author Bjorn Fjukstad, \email{bjorn@cs.uit.no} #' #' @seealso \code{\link{selectDesign}} #' #' @keywords design #' #' @export getDesigns <- function() { return(c("case-control", "cross-sectional")) } #' Get hospital name #' #'...
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# Question 1 RP April 5, 2016 #Compair total PM2.5 between 1999, 2002, 2005, and 2008 #use Base plot system. #set wd to dir of file to ensure files are found properly within dir this.dir <- dirname(parent.frame(2)$ofile) setwd(this.dir) #test to see if pm25 exists ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/na_if.R \name{na_if} \alias{na_if} \alias{na_if<-} \alias{\%na_if\%} \alias{mis_val} \alias{mis_val<-} \alias{\%mis_val\%} \title{Replace certain values with NA} \usage{ na_if(x, value) na_if(x) <- value x \%na_if\% value mis_val(x, value)...
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library(shiny) # Define server logic required shinyServer(function(input, output){ # We create an output that will be a text with the results of the questionnaire. output$resultAE <- renderText({ AE <<- as.numeric(input$r1)+as.numeric(input$r2)+ as.nume...
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library(shiny) library(dplyr) library(tidyr) library(tm) source("next_word_model.R") shinyServer(function(input, output) { output$out <- reactive({ validate( need(input$box1, "Please type in your words in the above textbox") ) next_word <- next_word(input$bo...
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# P3 combining script for weight, oocysts, qPCR, RT-qPCR, ELISA and hopefully FACS library(httr) library(RCurl) library(dplyr) library(Rmisc) # load in weight and oocysts P3_oocyst1 <- read.csv("https://raw.githubusercontent.com/derele/Eimeria_Lab/master/data/Experiment_results/P3_112019_Eim_oocyst.csv") P3_oocyst1$X...
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## Put comments here that give an overall description of what your ## functions do ##The couple of functions makeCacheMatrix and cacheSolve creates a matrix and cache its inverse, this is to avoid calculating the inverse of the same matrix multiple times ## instead cache the inverse matrix and call when required withou...
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# Sauron Plots and quantiles: require(tidyverse) # Read in data: # 115 # 1:2 = ConR1:ConR2, 1:3 = SelR1:ConR1, 3:4 = SelR1:SelR2, 2:4 = SelR2:ConR2 #CompR1 <- fread('../Data/Fst_combinedComparisons/combined_fst_1:3.csv') #CompR2 <- fread('../Data/Fst_combinedComparisons/combined_fst_2:4.csv') #Controls <- fread('../D...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/fun.N_1.R \name{fun.N_1} \alias{fun.N_1} \title{GMDH MIA auxiliar functions} \usage{ fun.N_1(x, y) } \description{ Performs auxiliar tasks to predict.mia } \keyword{internal}
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## Run_analysis.R - creating a tidy version of a subset of the UCIHAR datasets ## Download and unzip files. Set directory in R to folder where files are saved download.file("https://d396qusza40orc.cloudfront.net/getdata%2Fprojectfiles%2FUCI%20HAR%20Dataset.zip", destfile="UCI_HAR_dataset") unzip("UCI_HAR_da...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/dataset_iterators.R \name{with_dataset} \alias{with_dataset} \title{Execute code that traverses a dataset} \usage{ with_dataset(expr) } \arguments{ \item{expr}{Expression to execute} } \description{ Execute code that traverses a dataset } \de...
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setwd("C:/Users/Win7/Desktop/HVA TWK/JAAR 3/Minor/Project de waag") rm(list = ls()) load("C:/Users/Win7/Desktop/HVA TWK/JAAR 3/Minor/Project de waag/.RData") library(lubridate) library(shiny) library(shinydashboard) library(tidyr) library(dplyr) library(ggplot2) library(ggmap) library(dplyr) library(leaflet)...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/datasets.R \docType{data} \name{Hartnagel} \alias{Hartnagel} \title{Canadian Crime-Rates Time Series (from package carData)} \format{ This data frame contains the following columns: \describe{ \item{year}{ 1931--1968. } ...
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a<-vector() b<-vector() x<-vector() y<-vector() z<-vector() u<-vector() convert<-function(n){ i=1 while(n!=0){ a[i]=n%%2 n=floor(n/2) i=i+1 } return(a) } radical<-function(b){ t=length(b) sum1=0 for(i in 1:t){ sum1=sum1+b[i]*((1/2)^i) } return(sum1) } lcg<-function(a1,b1,m1,seed...
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plot4.R
### read the data library("data.table") datos_elec <- read.table("household_power_consumption.txt", header=T, sep=";") index_vec <- (datos_elec[,"Date"]=="1/2/2007")|(datos_elec[,"Date"]=="2/2/2007") datos_elec <- datos_elec[index_vec,] ### plot multi-graph and save it in a .png file png(filename = "plot4.png",width ...
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population.R
#' population - class definition #' #' For each geneartion (G_i) in the Game of Evolution #' There is a collection of `organism` objects which make up a population #' which are competing with one another to survive to the next generation. #' #' This is the class definition of a list of organisms and their associa...
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electric_data <- read.csv("D:/Data Science Track/Exploratory Data Analysis/Week1/exdata-data-household_power_consumption/household_power_consumption.txt", sep=";" , stringsAsFactors=FALSE) # subset the data to select the data of two dates only target_data <- subset(ele...
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rm(list=ls()) library(tidyverse) library(paletteer) library(ragg) library(extrafont) library(scales) library(ggtext) library(ggrepel) library(forcats) library(readxl) library(gt) theme_custom <- function() { theme_classic() %+replace% theme(plot.title.position="plot", plot.caption.position="plot"...
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#' @importFrom stats pchisq pnorm #a wrapper for kBET to fix a neighbourhood size scan_nb <- function(x,df,batch, knn){ res <- kBET(df=df, batch=batch, k0=x, knn=knn, testSize=NULL, heuristic=FALSE, n_repeat=10, alpha=0.05, addTest = FALSE, plot=FALSE, verbose=FALSE, adapt=FALSE) ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/functions.R \docType{data} \name{soImport2} \alias{soImport2} \title{Sample Strategic Options - Differentiated Importance} \format{An object of class \code{numeric} of length 6.} \usage{ soImport2 } \description{ An example of strategic optio...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/maplibre.R \name{maplibreOptions} \alias{maplibreOptions} \alias{addMaplibreGL} \title{Adds a MapLibre GL layer to a Leaflet map} \usage{ maplibreOptions( attribution = "", layers = NULL, layerDefs = NULL, opacity = 1, position = "f...
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#New Whatsapp project for text analysis library(rwhatsapp) library(lubridate) library(tidyverse) library(tidytext) library(kableExtra) library(knitr) library(ggimage) #1. Import chat ---- mychat<- rwa_read('chat_A_G.txt') #2. Clean Data summary(mychat) str(mychat) mychat<- mychat[-c(1:14),] #delete first raw with w...
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#' --- #' title: "Building and Validating Predictive Models for Acute Kidney Injury (AKI) using PCORnet CDM (Part II.1)" #' author: "xing song" #' date: "Feburary 09, 2019" #' output: html_document #' --- #' ### Stage 2.2: Predictive Models Validation (Retrain) #' #' In this experiment, we will retrain the benchmark p...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/DeclFunctions.R \name{StringSetDecl} \alias{StringSetDecl} \title{set of string declaration} \usage{ StringSetDecl(name, kind, value = NULL) } \arguments{ \item{name}{variable/parameter name} \item{kind}{"var" or "par"} \item{value}{value o...
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# sumFREGAT (2017-2022) Gulnara R. Svishcheva & Nadezhda M. Belonogova, ICG SB RAS prep.score.files <- function(data, reference = 'ref1KG.MAC5.EUR_AF.RData', output.file.prefix) { # 'CHROM', 'POS', 'ID', 'EA', 'P', 'BETA', 'EAF' if (length(data) == 1) { input.file <- data if (requireNamespace("data.table", quietl...
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## vim:textwidth=80:expandtab:shiftwidth=2:softtabstop=2 library(oce) context("LISST") test_that("as.lisst()", { set.seed(1333334L) t <- seq(0, 6, 1/15) * 3600 + as.POSIXct("2012-01-01 00:00:00", tz="UTC") n <- length(t) p <- 5 + sin(as.numeric(t - t[1]) / 12.4 / 3600 * 2 * pi)...
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library(plyr) source('./create_subset.R') # read train and test data in two datasets created by create_subset() function trainset <- create_subset('./X_train.txt', './y_train.txt', './subject_train.txt') testset <- create_subset('./X_test.txt', './y_test.txt', './subject_test.txt') # create full dataset fulldata <- r...
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tmp.R
sotkanet.indicators <- SotkanetIndicators(type = "table") as.character(sotkanet.indicators[sotkanet.indicators$indicator == indicator, "indicator.title.fi"]) # Sort indicators by median time correlation s <- names(sort(sapply(corlist, function (x) {median(na.omit(x))}))) #> unname(sapply(s[1:10], function (nam) {as.ch...
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2020-05-26T00:27:27.303813
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test_data.R
context("Sample Data") test_that("Data", { testthat::skip_on_cran() expect_equal(1, 1) expect_equal(ncol(swuds_sample), 154) # Test loading: path_to_sample <- system.file("extdata", package = "WUReview") # Read in the water quantity table dq <- read_swuds_quant(file.path(path_to_sample, ...
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companies.R
#` companies i.e. Returns information for all companies covered by Intrinio. the class returned is a list composed of a table and a integer. The former is the information of all the companies and the latter is the api_credits consumed by the function. Usefull to know all the companies that we have information from. #'...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/load_wc_logbook.R \name{load_wc_logbook} \alias{load_wc_logbook} \title{Load West Coast Logbook Data Function to load West Coast Logbook data} \usage{ load_wc_logbook() } \arguments{ \item{Parameter}{there aren't any} } \description{ Load Wes...
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library(shiny) # Define UI for application that plots random distributions shinyUI(pageWithSidebar( # Application title headerPanel("Shiny Love Calculator"), # Sidebar with a slider input for number of observations sidebarPanel( p("Love calculator will calculate the love scor...
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subscore.Wainer.Rd.R
library(subscore) ### Name: subscore.Wainer ### Title: Estimating true subscores using Wainer's augmentation method ### Aliases: subscore.Wainer ### ** Examples test.data<-data.prep(scored.data,c(3,15,15,20), c("Algebra","Geometry","Measurement", "Math")) subsco...
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run_analysis.R
library(dplyr) #Q1:Merges the training and the test sets to create one data set. #Extract general files file1 <- ("UCI HAR Dataset/features.txt") features <- read.table(file1) file2 <- ("UCI HAR Dataset/activity_labels.txt") activity_label <- read.table(file2) #Extract test files test_file1 <- ("UCI HAR Dataset...
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getRuntimePath.Rd
\name{getRuntimePath} \alias{getRuntimePath} \title{ Universe methods } \description{ Return the path to the current scenarios runtime output directory with extPath appended if passed. } \usage{ getRuntimePath(.Object, extPath) } \arguments{ \item{.Object}{ Universe object } \item{extPath}{ optional path extension ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/dalmatian.R, R/dalmatian_doc.R \docType{package} \name{dalmatian} \alias{dalmatian} \title{Run DGLM in \code{JAGS} via \code{rjags} or in \code{nimble}} \usage{ dalmatian( df, family = "gaussian", mean.model, dispersion.model, joint...
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make_figures.R
library(tidyverse) library(gridExtra) snr <- 5 ifile <- "../results/summary.txt" Summary <- read_delim(ifile, delim=" ") methods.values <- c("Vanilla knockoffs", "Transfer knockoffs - Linear", "Transfer knockoffs - Adaptive", "Transfer knockoffs - Lasso") methods.labels <- c("Vanilla", "Transfer - linearly re-ordered...
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nanshanjin/script
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snp.bar.R
library(ggplot2) a <- read.table("snp.type.new.txt",header=TRUE,sep="\t") pdf("snp.bar.pdf",width=14, height = 12) ggplot(a,aes(x=snp,y=number,fill=type),colour=c("red","yellow"))+geom_bar(stat="identity",position="dodge")+theme(axis.text.x=element_text(angle=30,hjust=1,vjust=1))+theme_bw()+theme(panel.background = ...
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test.600.VEME.MaC.incremental.R
#setwd("/Users/wimdelva/Documents/MiceABC/R") #source("simpact.wrapper.R") #source("VEME.wrapper.R") #source("dummy.wrapper.R") #source("simpact.parallel.R") #source("MaC.incremental.R") #source("dummy.MaC.incremental.R") #source("/user/data/gent/vsc400/vsc40070/phylo/scripts/VEME.wrapper.R") #source("/user/data/gent/...
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project.R
setwd('e:\\STA206\\assignment\\project') abalone = read.table("abalone.txt" , sep =',') colnames(abalone) = c("sex","length","diameter","height","whole","sucked", "viscera","shell","rings") a = abalone a$sex = factor(a$sex) # #split data # set.seed(12) n = nrow(a) index.s = sample(1:n , size = n*...
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cachematrix.R
# R-Programming Assignment 2: # This set of two functions can store the values of a matrix and its inverse (if the matrix is invertible) # in the global environment, and can then later retrieve the inverse from there, rather than calculating it again. # 1. makeCacheMatrix: This function returns a special list, whic...
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skranz/RTutor2
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example.convert = function() { setwd("D:/libraries/RTutor2/examples/auction") source.file = "auction_old_sol.Rmd" dest.file = "auction_new_sol.Rmd" convert.sol.file(source.file, dest.file) } convert.sol.file= function(source.file, dest.file) { txt = readLines(source.file) new = convert.sol.rmd(txt) wr...
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unbrowse <- function(){ a <- rstudioapi::getSourceEditorContext() a$selection[[1]]$text <- gsub('[^#]{1}browser\\(\\)', '#browser()', a$selection[[1]]$text) rstudioapi::insertText(location = a$selection[[1]]$range, a$selection[[1]]$text) } browse <- function(){ a <- rstudioapi::getSourceEditorContext() a$sel...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/cmhc.R \name{cmhc_snapshot_params} \alias{cmhc_snapshot_params} \title{Parameters for time series} \usage{ cmhc_snapshot_params(table_id = "2.2.12", geography_id = 2410, geography_type = 3, breakdown_geography_type = "CSD", filter = list(...
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Internet privacy poll.R
poll <- AnonymityPoll #Number of people with smartphones str(poll) summary(poll) sum(poll$Smartphone, na.rm = TRUE) table(poll$Smartphone) #States in the Midwest census region table(poll$State, poll$Region == 'Midwest') #State in the South census region with the largest number of interviewees sort(table(po...
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/Code/E Commerce Dataset R.R
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E Commerce Dataset R.R
library(readr) library(tidyr) library(tidyverse) library(readxl) library(reshape2) Data <- read_xlsx("D:/Data Analytics, Big Data, and Predictive Analytics Certificate/CIND 820 DA0 - Big Data Analytics Project - P2021/Data/E Commerce Dataset.xlsx", sheet = "E Comm", col_nam...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/tab2array.R \name{tab2array} \alias{tab2array} \title{Table to array conversion} \usage{ tab2array(tab) } \arguments{ \item{tab}{a table} } \value{ an array } \description{ Convert a table into an array. } \examples{ data(handy) handy tab2ar...
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raphaelhamonnais/UTC_SY09_DataMining
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1_Classifieur_Euclidien.R
library(mclust) library(xtable) source("src/fonctions-tp3/distXY.R") source("src/fonctions-tp3/front.ceuc.R") source("src/fonctions-tp3/front.kppv.R") source("src/fonctions-tp3/separ1.R") source("src/fonctions-tp3/separ2.R") source("src/Fonctions_Euclidien.R") source("src/Fonctions_Utilities.R") appData = read.csv("da...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/RSRC_estimators.R \name{FitRSRCModel} \alias{FitRSRCModel} \title{Calculates regression calibration estimates} \usage{ FitRSRCModel(valid_dat, full_dat, sampling_type, beta_x_start, beta_z_start) } \arguments{ \item{valid_dat}{Validation su...
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###########################################################################/** # @RdocClass IlluminaFastqDataFile # # @title "The abstract IlluminaFastqDataFile class" # # \description{ # @classhierarchy # # A IlluminaFastqDataFile object represents a FASTQ data file. # } # # @synopsis # # \arguments{ # \item{...}{...
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library(spdep) library(rgdal) w = read.gal("D:\\workspace\\DevWork\\github\\RDemo_gitee\\010GDP2000_2018\\data\\cngdp2000_2018_queen.gal", override.id=TRUE) w2 = read.gal("D:\\workspace\\DevWork\\github\\RDemo_gitee\\010GDP2000_2018\\data\\cngdp2000_2018_area7.gal", override.id=TRUE) cngdp <-...
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DEGResults <- function(qlf) { ##This function returns a dataframe with all DEG ##qlf: Object obatined from the generalized linear model qlf <- topTags(qlf, n = Inf) qlf <- as.data.frame(qlf) return(qlf) } volcanoplotR <- function(dge.obj, logfc, p.adj, type) { ##This function adds a new column (T or F) ac...
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# # This is the user-interface definition of a Shiny web application. You can # run the application by clicking 'Run App' above. # # Find out more about building applications with Shiny here: # # http://shiny.rstudio.com/ # library(shiny) library(ggplot2) library(yarrr) library(DT) # Define UI for application tha...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/mLRDglasso.R \name{glasso.complex} \alias{glasso.complex} \title{Sparse estimation of inverse G using graphical lasso.} \usage{ glasso.complex( Ghat, Tt, lambda = "ebic", type = "soft", gridTF = TRUE, gg = 1, bound = c(0.05, 1),...
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# ------------------------------------------------------------------------- # En este ejemplo vamos a utilizar a aplicar k-fold cross validation # usando la base de datos Auto de ISLR. # Lo vamos a realizar de forma manual y automatica # y vamos a crear un lm para explicar mpg en funcion de # horsepower y de horsepow...
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% Generated by roxygen2 (4.1.1): do not edit by hand % Please edit documentation in R/diversity.R \name{readEdges} \alias{readEdges} \title{A procedure to read a list of edges from a file} \usage{ readEdges(path, sepr, we = TRUE) } \arguments{ \item{path}{A string representing the path to a file. Rows and columns are d...
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#row-wise-check row_na_val=(rowSums(is.na(dataset)) na_finder_columnwise(sagar) #removing uniquie identifiers dataset=select(dataset,-Customer_ID) na_value_perecent=colSums(is.na(dataset))/prod(dim(dataset)[1]) col_na_val...
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library(tidyverse) Draft <- read.csv("source_data/draft.csv") Combine <- read.csv("source_data/combine.csv") #I'm thinking i'm going to use only data from 2000 on. I think these observations will be more complete. Also since the game has changed so much, this sort of analysis is only really relevant in the modern era...
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\name{sfunc} \alias{sfunc} \title{Extract the appropriate probability for a subset speciation event, given text code for rangesize of smaller descendant, and ancestor} \usage{ sfunc(charcell, relprob_subsets_matrix) } \arguments{ \item{charcell}{The text in the cell, indicating the type of speciation/cladogenesis...
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## Fri Mar 07 18:39:01 2014 ## Original file Copyright © 2016 A.C. Guidoum, K. Boukhetala ## This file is part of the R package Sim.DiffProc ## Department of Probabilities & Statistics ## Faculty of Mathematics ## University of Science and Technology Houari Boumediene ## BP 32 El-Alia, U.S.T.H.B, Algiers ## Alge...
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# Installieren von R Packeten, die in diesem Programm benutzt werden. # install.packages(c('tidyr', 'dplyr', 'ggplot2')) library(tidyr) library(dplyr) library(ggplot2) # Ergebnisse einlesen (muessen vorher heruntergeladen werden) # Falls Fehler eintreten, checken Sie ihren aktuellen Arbeitsordner von R, # indem Sie d...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/pil_fb-data.R \docType{data} \name{pil_fb} \alias{pil_fb} \title{Sardine Fish body Shape} \format{ data.frame } \source{ https://www.fisheries.noaa.gov/data-tools/krm-model } \usage{ data(pil_fb) } \description{ Example Shapes of the fish bod...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/date.R \name{date_month_factor} \alias{date_month_factor} \title{Convert a date or date-time to an ordered factor of month names} \usage{ date_month_factor(x, ..., labels = "en", abbreviate = FALSE) } \arguments{ \item{x}{\verb{[Date / POSIXc...
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# To automate this: # - Pass targetsdir as variable # - Read the chip type directly from the Attributes file (and install the library as needed) # - Come up with the control/treatment variable names from the Attributes file library(limma) library(affy) library(annotate) library(hgu133plus2.db) library(stringr) signif...
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################################################################ ### Functions created during phylogeographic analysis of ### ### Pterosagitta draco along a basin-scale Atlantic transect ### ### Cas Retel MSc ### ### casretel@gmail.com ...
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# Get path to file containing the discussions v_discussions_file <- ifelse(u_discussions_file == "", paste0("../data/data_discussions_", u_searchTerm, ".RData"), u_discussions_file) if (file.exists(v_discussions_file)) { cat("Loading existing discussion file...") load(v_discussions_file) } else { cat("Scraping H...
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#Read in the data electric <- read.table("household_power_consumption.txt", sep=";", header=TRUE) #Create the subset of interest elec.sub <- electric[electric$Date == "1/2/2007"| electric$Date == "2/2/2007",] #clean data elec.sub$Global_active_power <- as.numeric(elec.sub$Global_active_power) #Make graph png(file...
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summary(mydata) sum(is.na(mydata))
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/tntTracks-compositeTrack.R \name{composite-track} \alias{composite-track} \alias{merge-track} \alias{merge,TnTTrack,TnTTrack-method} \alias{merge,TnTTrack,missing-method} \title{Composite Track} \usage{ \S4method{merge}{TnTTrack,TnTTrack}(x, ...
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library(readxl) cocacola <- read_excel("F:/Excelr/Datasets/CocaCola_Sales_Rawdata.xlsx") View(cocacola) plot(cocacola$Sales,type = "o") plot(log(cocacola$Sales),type= "o") summary(cocacola) # creating 12 dummy variables for months x<-data.frame(outer(rep(month.abb,length = 42), month.abb,"==") + 0 ) View(x) co...
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# Unit tests for logbooks.R # Copyright Contributors to the Climbing Ratings project # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Un...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/getPars.R \name{getPars} \alias{getPars} \title{Get peak fit parameters} \usage{ getPars(res, dimfit = c(0, 1, 2)) } \arguments{ \item{res}{(nls-object) a nls fit result} \item{dimfit}{(integer) dimension of the fit} } \value{ A list of best...
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## Put comments here that give an overall description of what your ## functions do ## Write a short comment describing this function # Create a matrix that cached its inverse makeCacheMatrix <- function(x = matrix()) { inv_matrix <- NULL set <- function(y) { x <<- y inv_matrix <<- NULL } get <- funct...
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# print.dataverse_dataset_atom <- function(x, ...) {} parse_atom <- function(xml){ xmllist <- XML::xmlToList(xml) links <- lapply(xmllist[names(xmllist) == "link"], function(x) as.vector(x[1])) links <- setNames(links, sapply(xmllist[names(xmllist) == "link"], `[`, 2)) xmlout <- list(id = xmllist$id, ...
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library(data.table) read_data <- function(data_dir, file_type, verbose = FALSE) { main_dir = getwd() setwd(data_dir) files <- list.files(full.names = T) files <- files[which(grepl(file_type, files))] d <- rbindlist(lapply(files, FUN = function(files) { ...
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#=================================================================================================== #' Execute EMBOSS Primerseach #' #' @param seq_path A character vector of length 1. The path to the fasta file containing reference #' sequences to search for primer matches in. #' @param primer_path A character vect...
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AUTO analysis Gquad HIST RUN new S6.r
## siCa2 parameters ## do.trace<-FALSE # tarce for non-linear fit ## robust.shaver<-2 # 2 / 1 is used to shave very close/close Ca screens when standard method fails, 0 to use standard method ## max.cells.per.field<-9000 # ususally 5000 ## min.green.cells<-50 ## min.red.cells<-10 ## min.green.threshold<-50 ## max.g1.p...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/geobam_data.R \name{get_posteriors} \alias{get_posteriors} \title{Generate and extract geobam posteriors from reach data.} \usage{ get_posteriors(reach_data) } \arguments{ \item{reach_data}{list of reach data (input observations)} } \value{ l...
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test_that("aov_ss", { library(TestDimorph) testthat::expect_true(round( aov_ss( baboon.parms_df[1:3, ], Pop = 2, digits = 3, letters = TRUE, pairwise = TRUE, )[[1]]$p.value[1], 3 ) == 0.325) testthat::expect_true(aov_ss( baboon.parms_df[1:3, ], Pop = 2, digi...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/functions.R \name{filterIndustries} \alias{filterIndustries} \title{Filter a tibble by industry} \usage{ filterIndustries(dataToFilter, industries) } \arguments{ \item{dataToFilter}{tibble} \item{industries}{character[n]. Industry codes to i...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/LOOCV.R \name{LOOCV} \alias{LOOCV} \title{Leave-one-out crossvalidation (LOOCV) for a fitted spatial model} \usage{ LOOCV(SigMat, obsVec) } \arguments{ \item{SigMat}{The fitted covariance matrix for the spatial data} \item{obsvec}{a vector o...
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filter.totcor<-function(data,shw,r,C) { if(!is.numeric(r) || r<1.5 || r>4.5) stop("Invalid input parameter specification: check value of r") if(!is.numeric(C) || C<1) stop("Invalid input parameter specification: check value of C") if(!(all(c("F","Lmg")%in%names(data)))) stop("Err...
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#' --- #' title: "pso Demo" #' date: "7/17/2014" #' --- #' This script demonstrates running optimizations using pso as the #' optimization backend. Note that this script uses the v1 specification #' previous to version 0.8.3. #' Load packages library(PortfolioAnalytics) library(pso) #' Load data and set general Par...