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library(tidyverse) load("../data/myData_df5.Rdata") df <- df5_start %>% distinct(school) %>% mutate(title = row_number()) %>% mutate_at(vars(title), ~str_pad(., 2, pad = "0") ) if (fs::dir_exists("output_56")) { fs::dir_delete("output_56") } fs::dir_create("output_56") # "草小子美分校" 只有5年级,没有6年级的数据 df_a <-...
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library(caret) ### Name: SLC14_1 ### Title: Simulation Functions ### Aliases: SLC14_1 SLC14_2 LPH07_1 LPH07_2 twoClassSim ### Keywords: models ### ** Examples example <- twoClassSim(100, linearVars = 1) splom(~example[, 1:6], groups = example$Class)
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library(rhli) ### Name: cfmini ### Title: 'cfmini' ### Aliases: cfmini ### ** Examples status <- Integer(-1L) cfmini(status)
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setwd("C:/.") # For code on loading data and creating new data set see plot1.R # Create plot 4 png("plot4.png", width=480, height=480) par(mfrow = c(2,2)) # Plot 4.1 plot(NewHHpowcon$Time, NewHHpowcon$Global_active_power, type="l", xlab="", ylab="Global Active Power") # Plot 4.2 plot(NewHHpowcon...
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setwd("~/Desktop/") #install.packages('brnn') library('brnn') raw_data <- read.csv("samplew.csv", header=T) raw_data <- read.csv("samplec.csv", header=T) raw_data <- read.csv("samplewx.csv", header=T) raw_data <- read.csv("samplecx.csv", header=T) ###temperature prediction for all sensors in future 72 hours ##without h...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/p_s_strat.R \name{p.s.strat} \alias{p.s.strat} \title{Calculates p(s) for the design stratified by y} \usage{ p.s.strat(ys, yr, log = F, specs) } \arguments{ \item{ys}{vector of the sample values of the dependent variable} \item{yr}{vector o...
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# fisher_exact_test.R pvalue <- function(n) { p_non_effect <- 0.05 p_effect <- 0.1 p_group <- 0.5 mat <- matrix(c(n * p_non_effect * p_group, n * (1 - p_non_effect) * (1 - p_group), n * p_effect * p_group, n * (1 - p_effect) * p_group), ncol = 2) fisher.test(mat)$p.value } for (n in 1:1000...
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refactor <- function(factor, levels) { if(!is.factor(factor)) stop("'factor' must be factor\n") if(!nlevels(factor)==length(levels)) stop("Level number of factor' must be of the same length of 'levels'\n") if(is.null(names(levels))) stop("'levels' must be a named vector: names are (ordered) old levels...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/b2_authorize_account.R \name{b2_authorize_account} \alias{b2_authorize_account} \title{Authorize Backblaze B2} \usage{ b2_authorize_account(account_id = Sys.getenv("B2_ACCOUNT_ID"), application_key = Sys.getenv("B2_APPLICATION_KEY")) } \arg...
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setwd("C:/Users/andrew/Documents/Gettingcleaningdata_coursera/project_data/UCI HAR Dataset") ###submit code after here: X_train<-read.table("X_train.txt") y_train<-read.table("y_train.txt") X_test<-read.table("X_test.txt") y_test<-read.table("y_test.txt") subject_test<-read.table("subject_test.txt") subject_train<-re...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/dsc.R \name{reset_method} \alias{reset_method} \title{Removes all output and scoress for a method.} \usage{ reset_method(dsc, methodname, force = FALSE) } \arguments{ \item{dsc}{A dsc object.} \item{methodname}{String indicating name of meth...
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library(ggplot2) library(reshape2) library(png) library(proto) library(gridExtra) # Add a "horizontal bar" type to ggplots, based on geom_bar. This is needed for the # combined graph. Briefly, you cannot combined facets with space="free" and scale="free" # with the coord_flip() object. However, geom_bar only has verti...
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\name{totData} \alias{totData} \title{ Aggregation of qPCR biological replicates and data transformation } \description{ This function aggregates qPCR biological replicates and calculates the main parameters : mean (arithmetic or geometric), the standard deviation and the standard error from your biological replicat...
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#' @title 27 experimental studies from #' \insertCite{anderson2010violent;textual}{RoBMA} that meet the best practice criteria #' #' @description The data set contains correlation coefficients, sample #' sizes, and labels for 27 experimental studies focusing on the effect of #' violent video games on aggressive behavio...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/xgb.max_sensitivity.R \name{xgb.max_sensitivity} \alias{xgb.max_sensitivity} \title{xgboost evaluation metric for maximum Sensitivity (True Positive Rate)} \usage{ xgb.max_sensitivity(pred, dtrain) } \arguments{ \item{pred}{Type: numeric. The...
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##Plot1 ## Extracting data fulldata<-read.csv("household_power_consumption.txt", header=TRUE, sep=";",na.strings="?") data <- fulldata[fulldata$Date %in% c("1/2/2007","2/2/2007") ,] ##plot graph png("plot1.png", width=480, height=480) hist(data$Global_active_power, main="Global Active Power", xlab="Global Acti...
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### Analysis for "Small rainfall changes drive substantial changes in plant coexistence" ### Mary Van Dyke, mnvandyke@ucla.edu ### Last edit: 25 July 2022 ### this script makes the structural analysis tables (Extended data tables 5,6,7) library(gt) library(tidyverse) library(dplyr) struc <- read.csv("./output/struc...
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library(treemap) # itreemap: Interactive user interface for treemap data(business) itreemap(business) # treecolors: Interactive tool to experiment with Tree Colors treecolors() # treegraph Create a tree graph treegraph(business, index=c("NACE1", "NACE2", "NACE3", "NACE4"), show.labels=FALSE) treegraph(business[busi...
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credentials.r
consumer_key<-"" consumer_secret<-"" access_token<-"" access_secret<-"" save(list=c("consumer_key", "consumer_secret", "access_token", "access_secret"), file="credentials", ascii=TRUE)
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\name{date2day} \alias{date2day} \title{ Convert date-time data to numeric data in days } \description{ A function to convert date-time data to days with respect to a date-time origin. } \usage{ date2day(dates, start, tz = "", ...) } \arguments{ \item{dates}{A date-time or date object. Typically, it is a character ...
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##-GOOGLE TRENDS AUTOMATION-- #CRON JOB #1.0 LIBRARIES #GMAIL API install.packages("gmailr") library(gmailr) #Report Automation install.packages("rmarkdown") library(rmarkdown) #Core library(tidyverse) library(lubridate) #File System library(fs) # 2.0 KEY PARAMETERS # 2.1 Report Paramet...
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plot_factor_returns_cum <- function(.data) { .data %>% mutate_if(is.numeric, cumsum) %>% pivot_longer(-date) %>% ggplot(aes(x = date, y = value, color = name)) + geom_line() }
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# Isabella Fischer library(tidyverse) set.seed(3) coord = as_tibble(read.csv("http://vincentarelbundock.github.io/Rdatasets/csv/boot/brambles.csv")) coordinates = as.matrix(select(coord, x, y)) coordinates = kmeans(coordinates, centers = 3, algorithm = "Forgy") cluster2 = fitted(coordinates, method = "classes...
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hess.lo <- function(para, map, data, ref, inv.V, bet0, outcome){ h <- numDeriv::jacobian(score.lo, para, map = map, data = data, ref = ref, inv.V = inv.V, bet0 = bet0, outcome = outcome) colnames(h) <- names(para) rownames(h) <- names(para) h }
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####============================================================ ## Testing some of the (basic) functionality of the SimpleCompoundDb. ## ####------------------------------------------------------------ detach("package:xcmsExtensions", unload=TRUE) library(xcmsExtensions) test_SimpleCompoundDb <- function(){ ## J...
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#' Simulate a dataset #' #' @param N number of observations #' @param k optional parameter setting degree to which prison/x is deterministic simsort <- function(N,k=.75){ X = runif(N, 0, 3) A = sample(c(1:3), size = N, replace = T) mu = k - (1-k)*as.numeric( (A==1 & X < 1) | (A==2 & X >=1 & X < 2) | (A==3 & X >...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/cli.R \name{format_inline} \alias{format_inline} \title{Format and returns a line of text} \usage{ format_inline( ..., .envir = parent.frame(), collapse = TRUE, keep_whitespace = TRUE ) } \arguments{ \item{...}{Passed to \code{\link[=...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/fp_inspect_raw_data.R \name{fp_save_inspection_plot} \alias{fp_save_inspection_plot} \title{Save raw data plots from a single FP binding dataset} \usage{ fp_save_inspection_plot(input_plot, dataset_name, output_directory, plot_format) } \argu...
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gases_total <- read.csv("C:/Users/Maren/Dropbox/UQ PhD/PhD work/experiments/(4) GHG monitoring experiment Toowoomba/gases_total.csv") ##N2O anova_N2O_kg <- aov(gases_total$N2O_N_kg ~ gases_total$treatment) summary(anova_N2O_kg) pairwise.t.test(gases_total$N2O_N_kg, gases_total$treatment, p.adjust = "none") describeBy(...
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path = '/Users/jwrichar/Documents/CDI/CensoredData/' miras = read.table(paste(path,"data/new_periods.dat",sep="")) sum( abs((miras[,2] * 2 - miras[,4]) / miras[,4]) < 0.05) / dim(miras)[1] # 0.1264775 of Miras are 'double' the LS period sum( abs((miras[,2] * 3 - miras[,4]) / miras[,4]) < 0.05) / dim(miras)[1] # 0.0...
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# # Copyright (C) 2019 University of Amsterdam # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 2 of the License, or # (at your option) any later version. # # This program is dis...
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downloadTextDataset <- function(){ fileURL <- "https://d396qusza40orc.cloudfront.net/dsscapstone/dataset/Coursera-SwiftKey.zip" if(!file.exists(basename(fileURL))){ download.file(fileURL, basename(fileURL)) unzip(basename(fileURL)) } } subsetTextLines <- function(x, percent, destfile=NULL, ...
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#' LambsWeight #' #' Daily weight estimates of individual lambs in a small herd. #' The dataset contains data of 80 daily weight estimates for 39 lambs. #' #' @source Volcani center, ARO PLF lab. Data was collected from a novel system which contains electronic scales and drinking behavior sensor, designed for automati...
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# Reading ----------------------------------------------------------------- read_file <- function(path) { lines <- read_lines(path) paste0(lines, "\n", collapse = "") } # Inspired by roxygen2 utils-io.R (https://github.com/klutometis/roxygen/) ----------- readLines <- function(...) stop("Use read_lines!") writeL...
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#' Centrality Distance #' #' Centrality is a core concept in studying the topological structure of #' complex networks, which can be either defined for each node or edge. #' \code{nd.centrality} offers 3 distance measures on node-defined centralities. #' See this \href{https://en.wikipedia.org/wiki/Centrality}{Wikipedi...
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# imports library(tidyverse) library(janitor) library(lubridate) library(maps) library(stringr) # import raw <- read_csv("NV_data.csv") output <- raw %>% clean_names("snake") %>% mutate( state_fips = "32", state_short = "NV", state = "Nevada", area_type = case_when( area == "Montana" ~ "st...
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library(dplyr) library(readr) library(stringr) casn <- read_csv("Downloads/R/DA_Project/Data/asn_c.csv") %>% as.data.frame(stringsAsFactors = F) %>% mutate(Total_occupants = ifelse(Total_occupants == 0 & Total_fatalities != 0, Total_fatalities, Total_occupants), Total_survivors = abs(Total_occupants - Tota...
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testlist <- list(hi = -3.1638862116397e+134, lo = -3.16388621163964e+134, mu = -3.16388619810127e+134, sig = 9.00092879516474e-316) result <- do.call(gjam:::tnormRcpp,testlist) str(result)
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## The following two functions makeCacheMatrix() and cacheSolve() can be ## used to cache the inverse of a matrix. As long as the concerned matrix ## is not changed, its inverse is computed only once and can be retrived ## for later usage. ## The makeCacheMatrix() function takes a matrix as its argument, returns ## a ...
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seattle_geojson = list( type = "Feature", geometry = list( type = "MultiPolygon", coordinates = list(list(list( c(-122.36075812146, 47.6759920119894), c(-122.360781646764, 47.6668890126755), c(-122.360782108665, 47.6614990696722), c(-122.366199035722, 47.6614990696722), c(-12...
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library(psych) library(GPArotation) dm <- read.csv("drinkingmotives2007.csv",header=T) attach(dm) head(dm) compout <- princomp(~D1+D2+D3+D4+D5+D6+D7+D8+D9+D10+ D11+D12+D13+D14+D15+D16+D17+D18+D19+D20, cor=TRUE) summary(compout) vars <- data.frame(D1, D2, D3, D4, D5, D6, D7, D8,...
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set.seed(123) ## Standard Walk walk <- rhrOU(n = 5000) plot(walk) ## Adjust pull back walk <- rhrOU(n = 5000, A = matrix(c(0.01, 0, 0, 0.01), 2)) plot(walk) ## Effect of sigma: not only the scale of x and y changes set.seed(123) walk <- rhrOU(n = 5000, A = matrix(c(0.01, 0, 0, 0.01), 2), sigma = 1) plot(walk) set.s...
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#' Build and compile keras sequential models with 2 hidden layers #' #' This function can setup and compile sequential models. Please have a look at #' [keras_model_sequential](https://keras.rstudio.com/reference/keras_model_sequential.html), #' [layer_dense](https://keras.rstudio.com/reference/layer_dense.html) and ...
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#支持向量机是现在被广泛用于解决多类非线性分类问题和回归问题。 #传递给函数svm()的关键参数是kernel、cost和gamma。 #Kernel指的是支持向量机的类型,它可能是线性SVM、多项式SVM、径向SVM或Sigmoid SVM。 #Cost是违反约束时的成本函数,gamma是除线性SVM外其余所有SVM都使用的一个参数。 #还有一个类型参数,用于指定该模型是用于回归、分类还是异常检测。 #但是这个参数不需要显式地设置,因为支持向量机会基于响应变量的类别自动检测这个参数,响应变量的类别可能是一个因子或一个连续变量。所以对于分类问题,一定要把你的响应变量作为一个因子。 #例子一参考:http://blog.jobbol...
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#' @title Iteration trace of removed scores #' @description plot the score of removed feature in each iteration. #' @family plot #' @return ggplot2 object. #' @param li the list result of \code{feature_removal}. #' @import utils #' @import ggplot2 #' @export #' @examples #' g1 <- SWRG1; g0 <- SWRG0 #' #' r...
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allowMultipleArgs <- function(){ #' Modify trailing arguments passed such that space #' separated arguments to same flag becomes joined by #' commas; a format supported by optparse, and which later #' easily can be split into separate parts again oriArgs <- commandArgs(trailingOnly = TRUE) flags.p...
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\name{yadirGetCampaign} \alias{yadirGetCampaignList} \alias{yadirGetCampaign} \title{Get Campaigns List} \description{Returns the parameters of campaigns that meet the specified criteria.} \usage{ yadirGetCampaignList(Logins = getOption("ryandexdirect.user"), States = c("OFF", "ON", "SUSPENDE...
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install.packages("ROAuth",dependencies = TRUE) library(streamR) library(ROAuth) library(RCurl) library(bitops) library(rjson) library(tm) requestURL <- "https://api.twitter.com/oauth/request_token" accessURL <- "https://api.twitter.com/oauth/access_token" authURL <- "https://api.twitter.com/oauth/authorize" consumerKe...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/vanbelle1.R \name{setXtrain.VB1FitObj} \alias{setXtrain.VB1FitObj} \title{\code{VB1FitObj} (ranking approach)} \usage{ \method{setXtrain}{VB1FitObj}(vb1o, sv) } \arguments{ \item{vb1o}{[\code{VB1FitObj}]\cr Object of class \code{RegFitObj} ta...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/geom-label-repel.R \name{makeContent.labelrepelgrob} \alias{makeContent.labelrepelgrob} \title{grid::makeContent function for labelRepelGrob.} \usage{ makeContent.labelrepelgrob(x) } \description{ grid::makeContent function for labelRepelGrob...
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"n" <- 10 "Y" <- c(NA,NA,1,1,1,1,0,0,0,0) "fatturato" <- c(100,230,123,120,1231,100,230,1230,1200,123010) "missing" <- rep(0, n) missing[which(is.na(Y))] <- fatturato[which(is.na(Y))]
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# 1900년대 이후 공화당, 민주당 대통령 연설문 repub <- vector() democ <- vector() re <- c("1909","1921","1925","1929","1953","1957","1969","1973","1981","1985","1989","2001","2005") de <- c("1913","1917","1933","1937","1941","1945","1949","1961","1965","1977","1993","1997","2009") for(i in list.files(path='.',pattern='[.]txt$')){ text...
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#################### server <- function(input, output, session) { observe({ updateSliderInput(session, "floorcapramp", max=input$time) updateSliderInput(session, "icucapramp", max=input$time) if(input$floorcaptarget < input$floorcap) { updateSliderInput(session, "floorcaptarge...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/utils-data.R \name{add_title} \alias{add_title} \title{add_title} \usage{ add_title(x, title, overwrite = FALSE) } \arguments{ \item{x}{An object} \item{title}{Title of object (character)} \item{overwrite}{Allow overwrite of title? Logical}...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/internal.R \name{sm_desc_update} \alias{sm_desc_update} \title{Update description of a big.matrix after a row subset (internal)} \usage{ sm_desc_update(desc, first, last) } \arguments{ \item{desc}{Existing big.matrix.descriptor} \item{first}...
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### R code from vignette source 'RcppEigen-Introduction.Rnw' ################################################### ### code chunk number 1: RcppEigen-Introduction.Rnw:8-13 ################################################### pkgVersion <- packageDescription("RcppEigen")$Version pkgDate <- packageDescription("RcppEigen")$...
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# Read data set tabAll <- read.table("household_power_consumption.txt", sep = ";", header = TRUE) # Convert date and time format tabAll[,1]<-as.Date(strptime(tabAll[,1], format="%d/%m/%Y")) tabAll[,2]<-strftime(strptime(tabAll[,2],"%H:%M:%S"), "%H:%M:%S") # Select relevant data tabSel <- subset(tabAll, tabAll$Date=="2...
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graphics.off() rm(list = ls()) options(error=stop) library(FME) library(plyr) ####### #PATHS ####### output.collin.path <- "C:/Doctoraat/Irrigatie2.0/collin/Morris/Capture_Variation/Measurement_Int95MAX/Collin_18pars/" #location where collinearity results are saved scaled_path <- "C:/Doctoraat/Irrigatie2.0...
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#' Create Point-by-point Data #' #' Creates an expanded point-level version from the flat representation in \code{point_by_point} #' #' @param obj a row of the \code{point_by_point} data frame #' #' @export pbp <- function(obj){ set_score <- function(x){ games <- strsplit(x, split = ";")[[1]] ngames <- sapply(games...
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# | Run the R command str with the argument diamonds to see what the data looks # | like. # str(diamonds) # tibble [53,940 × 10] (S3: tbl_df/tbl/data.frame) # $ carat : num [1:53940] 0.23 0.21 0.23 0.29 0.31 0.24 0.24 0.26 0.22 0.23 ... # $ cut : Ord.factor w/ 5 levels "Fair"<"Good"<..: 5 4 2 4 2 3 3 3 1 3 ... # $...
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require(dplyr) require(ggplot2) require(forcats) setwd("E:/Maine Drive/Analysis/Kaj Thesis") ### Comparison of Magnitude of Interactions interactions.raw <- read.csv("InteractionResults.csv") interactions.raw$Beh_State <- factor(interactions.raw$Beh_State, levels = c("Roost", "Sta...
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library(RSurveillance) ### Name: pfree.calc ### Title: Probability of freedom over time ### Aliases: pfree.calc ### Keywords: methods ### ** Examples # examples for pfree.calc pfree.calc(0.8, 0.01, 0.5) pfree.calc(rep(0.6,24), 0.01, 0.5) pfree.calc(runif(10, 0.4, 0.6), 0.01, 0.5) pfree.calc(runif(10, 0.4, 0.6), run...
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\name{wcPCA} \alias{wcPCA} \title{Within-class Principal Component Analysis} \description{ Within-class Principal Component Analysis } \usage{ wcPCA(X, class, scale.unit = TRUE, ncp = 5, ind.sup = NULL, quanti.sup = NULL, quali.sup = NULL, row.w = NULL, col.w = NULL, graph = FALSE, axes = c(1, ...
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assignment.R
x <- 1 print(x) x msg <- "hello" msg x <- ## Incomplete expression x
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carlosardon/Mis-ejercicios-en-R
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matcor1.R
#Script R para correlación lineal de Pearson y correlación de distancias #Primero instalar los siguientes paquetes library(energy) library(ggplot2) library(magrittr) library(ggpubr) library(dplyr) library(Hmisc) library(corrplot) library("PerformanceAnalytics") library(psych) library(ppcor) #Luego deb...
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DUanalytics/rAnalytics
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d2a-fmssrcc.R
# Read Data into R Environment #CSV Files---- #Read from CSV file in PC head(iris) write.csv(iris, "./data/iris.csv", row.names=F) read1 = read.csv(file="./data/iris.csv", header = TRUE,sep = ",") read1 read1 = read.csv(file="./data/dhiraj.csv", header = TRUE,sep = ",") head(read1) str(read1) class(read1) head(read1) ...
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wahlperioden.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/dip21_search.R \name{wahlperioden} \alias{wahlperioden} \title{function returning options for legislative terms} \usage{ wahlperioden(regex = NULL) } \arguments{ \item{wp}{a regular expression used to look up labels and return their values} }...
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/run_analysis.R
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run_analysis.R
# load packages and save main directory library (plyr) library (reshape2) wd <- getwd() # load training data setwd("train") xtrain <- read.table("x_train.txt") ytrain <- read.table("y_train.txt") strain <- read.table("subject_train.txt") # load test data setwd(wd) setwd("test") xtest <- read.table("x_test.txt") ytest...
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compareTemporal.Rd
% Generated by roxygen2 (4.1.1): do not edit by hand % Please edit documentation in R/compareCrimes.R \name{compareTemporal} \alias{compareTemporal} \title{Make temporal evidence variable from (possibly uncertain) temporal info} \usage{ compareTemporal(DT1, DT2, show.pb = FALSE, ...) } \arguments{ \item{DT1}{(...
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plot6.R
#NEI <- readRDS("summarySCC_PM25.rds") #SCC <- readRDS("Source_Classification_Code.rds") #convert year and type to factors NEI$year <- as.factor(NEI$year) NEI$type <- as.factor(NEI$type) #subset motor vehicles for Baltimore City, MD and Los Angeles, CA balmotor <- subset(NEI, NEI$type == "ON-ROAD" & NEI$fips == "245...
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ggstance.R
#' @importFrom purrr map map_if walk2 keep map_at splice invoke some #' walk partial set_names %||% NULL #' Base ggproto classes for ggstance #' #' @seealso ggplot2::ggproto #' @keywords internal #' @name ggstance-ggproto NULL
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glm_modal.R
# GLM Data observeEvent(data_input(), { glm_data <<- list() glm_data$formula <<- list( resp_var = reactive({ data_input()$covariates[1] }), cov_var = reactive({ NULL }), not_selected = reactive({ data_input()$covariates }), intercept = reactive({ TRUE }), ...
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assigkcluster.R
install.packages("plyr") library(plyr) x<-runif(50) x y<-runif(50) y data<-cbind(x,y) data plot(data) plot (data, type ="n") text(data, rownames(data)) km<-kmeans(data,4) str(km) install.packages("animation") library(animation) km1<-kmeans.ani(data,4) str(km1) km$cluster km$centers ...
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mkiang/beiwe_missing_data
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plotting_helpers.R
## Plotting helpers ## Misc helpers ---- mkdir_p <- function(dir_name) { ## Mimics mkdir -p dir.create(dir_name, showWarnings = FALSE, recursive = TRUE) } ## Themes ---- mk_classic <- function(...) { ## Just a shortcut for serif fonts and classic theme with legend in upper ## left by default. t...
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zeltak/org
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generate_exposures.r
# script to join geolocated BI lat/lon/dates with Itai's PM and temperature predictions # started 3/24/2016 library(data.table) library(pryr) # keep track of memory usage library(ggmap) # to plot participant locations #### participant info load("data/FromHeather/BIdeID_2016-03-22.RData") bideid <- BIdeID rm(BIdeID) ...
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edrake07/Machine-Learning-Project
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9_FinalCode.R
#### Final Project Code # load packages library(dplyr) library(caret) library(randomForest) library(rattle) library(parallel) library(doParallel) library(ggplot2) # set seed for replicability set.seed(1234567) ## Basic Data Load and Cleaning # read in data from csv files training_full <- read.csv("train.csv") va...
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marilotte/Pregancy_Relapse_Count_Simulation
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convert.R
## ----message=FALSE, warning=FALSE, include=FALSE------------------------------ library(knitr) options(knitr.kable.NA = "") knitr::opts_chunk$set(comment = ">") options(digits = 3) pkgs <- c("effectsize", "ggplot2", "correlation", "parameters", "bayestestR") if (!all(sapply(pkgs, require, quietly = TRUE, chara...
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cran/JGL
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net.edges.R
net.edges <- function(theta) { adj = make.adj.matrix(theta,separate=TRUE) K = length(theta) edges = list() for(k in 1:K) { diag(adj[[k]])=0 gadj = graph.adjacency(adj[[k]],mode="upper") edges[[k]] = E(gadj) } return(edges) }
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cran/RWeka
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dot.Rd
\name{dot} \alias{write_to_dot} \alias{write_to_dot.Weka_classifier} \title{Create DOT Representations} \description{ Write a DOT language representation of an object for processing via Graphviz. } \usage{ write_to_dot(x, con = stdout(), \dots) \method{write_to_dot}{Weka_classifier}(x, con = stdout(), \dots) } \arg...
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mrm_quantify.R
#' title: MRM quantification #' author: xieguigang <gg.xie@bionovogene.com> #' #' description: do LC-MS/MS targeted metabolomics quantitative analysis #' base on the MRM ion pairs data. This script will take a set of #' *.mzML raw data files, and then create linear models based on the #' linear reference raw d...
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hcschneider30/ExData_Plotting1
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plot1.R
# read data.frame from a ';' seperated file # define column classes # NA symbol in this data file is '?' df <- read.table("household_power_consumption.txt", sep=";", header=TRUE, colClasses = c("character", "character", "numeric", "numeric", ...
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/ModelConstruction/FAO56_recycle.R
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dsidavis/GreenWater
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2017-10-26T20:32:50
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FAO56_recycle.R
#alternative approach using means for different periods of the Kc curve. This was used in the FAO56 spreadsheet program. #calculate U2 and minRH by year for mid to late period for each cell of interest; this is used by Kcb function. Should just use average of years for 2017 U2_mid <- function(U2.df, col_index, Jmid, ...
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/Script_Aunts.R
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JuanPablo-RamirezLoza/Wolf-Kinship-Demography
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Script_Aunts.R
# kinship relationships at equilibrium # Packages used to build the sub-models library(NetLogoR) library(testthat) library(kinship2) library(SciViews) library(DescTools) load(file="popSim.Rdata") # all indiv ever lived in the pop # calculate relatedness for all indiv alive at the end, and for females alive only #w...
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feigensp/lehre
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2020-08-03T18:42:47.228666
2020-01-20T08:13:04
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demo.R
#Read file input <- read.csv("C:/../rt.csv", sep=";", dec=",") rt <- input[,'time..task'] #Minimum/Maximum minValue <- min(rt) maxValue <- max(rt) #Arithmetic mean meanValue <- mean(rt) medianValue <- median(rt) #Histogram rtNum <- as.numeric(unlist(rt)) hist(rtNum) #Boxplots boxplot(rtNum) #Violinplots; install a...
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MikkoVihtakari/MarineDatabase
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2022-11-06T18:17:31.395171
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convert_dates.R
#' @title Convert Excel dates to consistent date formatting #' @description Converts messy nonstandarized Excel dates to consistent date formatting. #' @param dt Data.frame for which the date conversions should be made. The date column has to be named as \code{date}. #' @param date_col Not implemented yet. Name of t...
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/filepath.r
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c-zhong/TriageBehaviorGraphAnalysis
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filepath.r
#get the whole path of a subject getFilename <-function(subID){ filename <- "output//" result <- paste(filename,subID,sep="") result <- paste(result,".csv",sep="") return(result) } getNodeFilename <-function(subID){ filename <- "data//" result <- paste(filename,subID,sep="") result <- paste(result,".csv"...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/simulate.r \name{table.contvar} \alias{table.contvar} \title{Display a vector of continuous values in a table using the breaks supplied. Attachs a meta attribute with varname} \usage{ table.contvar(x, breaks, varname) } \arguments{ ...
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# Trophic Group playing with animation ------------------------------------ install.packages("gganimate") library(gganimate) install.packages("hrbrthemes") library(hrbrthemes) library(ggplot2) ARD_func_sum3 <- ARD_3 %>% mutate(treatment = factor(treatment, levels = c("0%", "30%", "50%", "70%", "100%", "co...
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mysql_read.R
## Read some data from an AWS MySQL Instance ## library(RMySQL) mysql_host <- "gwu-workshop-mysql.cegeieiv8hqw.us-west-2.rds.amazonaws.com" mysql_user <- "derrick" mysql_pass <- "" mysql_dbname <- "mydb" mysql_port <- 3306 mydb = dbConnect(MySQL(), user=mysql_user, password=mysql_...
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temporal_discounting.R
library(freedom) ob <- post_fr(0.5, 0.5) stopifnot(ob > 0.5) ob1 <- tools::assertError(post_fr(-0.1, 0.5))[[1]]$message ob2 <- tools::assertError(post_fr(1.1, 0.5))[[1]]$message ex <- "The prior probability of freedom cannot be greater than 1 or less than 0" stopifnot(length(grep(ex, ob1)) == 1L) stopifnot(length(gre...
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HW1.R
# Question 1 recursion <- function (n) { if (n == 1) { return(1) } else if (n == 2) { return(1) } else { return (recursion (n-1)+recursion (n-2)+ 2*(n-2)) } } print(recursion(36)) # Question 2 binomial <- function (n,m) { if (m == 0 | m == n) { return (1) } else { result <- bi...
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bread.maxLik.Rd.R
library(maxLik) ### Name: bread.maxLik ### Title: Bread for Sandwich Estimator ### Aliases: bread.maxLik ### Keywords: methods ### ** Examples ## ML estimation of exponential duration model: t <- rexp(100, 2) loglik <- function(theta) log(theta) - theta*t ## Estimate with numeric gradient and hessian a <- maxLik(l...
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rinput.R
library(ape) testtree <- read.tree("5785_0.txt") unrooted_tr <- unroot(testtree) write.tree(unrooted_tr, file="5785_0_unrooted.txt")
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Solution (Movies).R
library("arules") library("readxl") movie_data <- read.csv(file.choose()) View(movie_data) library("arulesViz") arule <- apriori(as.matrix(movie_data[6:15]), parameter = list(support = 0.2, confidence = 0.7)) arule1 <- apriori(as.matrix(movie_data[6:15]), parameter = list(support = 0.06, confidence = 0.8)) ...
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Rascunho.R
library(tidyverse) library(ggplot2) a=read.csv(file = "distritos_dummy.csv") expand.grid(x =as.factor(1:3),y= as.factor(1:3), id = 1:9) ->df df$tempo<-round(a$Tempo.de.viagem,2) df %>% ggplot(aes(x,y))+ geom_tile(col = "white")+ facet_wrap(~id,ncol= 3,scales = "free")+ geom_text(aes(label = tempo))
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get_species_docs.R
#' Get all PDF URLs from query URL #' #' Function description; defaults to title if left blank #' #' @param url The URL to be queried for PDF links #' @importFrom xml2 read_html #' @importFrom rvest html_nodes html_attr #' @export #' @examples #' \dontrun{ #' url <- "http://www.nmfs.noaa.gov/pr/species/turtles/gre...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/data_documentation.R \docType{data} \name{gemeindegebiet} \alias{gemeindegebiet} \title{Municipality border (Polygons)} \format{An \code{sf} object containing polygon data with four features. \describe{ \item{NAME}{Name of the country} \i...
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exercise.R
rm(list = ls()) gc() ##################################################### # 제 1절 회계등식 ##################################################### 자산 <- 300000 부채 <- 200000 자본 <- 100000 자산 부채 + 자본 자산 == 부채 + 자본 print(자산) options('scipen' = 10) print(자산) 부채 + 자본 자산 == 부채 + 자본 ###########################################...
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blr-plots.R
#' Residual vs fitted values plot #' #' Residual vs fitted values plot. #' #' @inheritParams blr_plot_pearson_residual #' @param line_color Color of the horizontal line. #' #' @examples #' model <- glm(honcomp ~ female + read + science, data = hsb2, #' family = binomial(link = 'logit')) #' #' blr_plot_residual_fitted(m...