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library(testthat) library(recipes) n <- 20 set.seed(752) as_fact <- data.frame( numbers = rnorm(n), fact = factor(sample(letters[1:3], n, replace = TRUE)), ord = factor(sample(LETTERS[22:26], n, replace = TRUE), ordered = TRUE ) ) as_str <- as_fact as_str$fact <- as.character(as_str$fact) as_str$ord <- a...
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### Test to help everyone get started! #new code install.packages("ggplot2") install.packages("RCurl") install.packages("foreign") library(ggplot2) library(RCurl) library(foreign) url1 <- getURL("https://raw.githubusercontent.com/ThomasKraft/Dartmouth-EEES-Modeling-Group/master/Data/serotiny.csv") cdat <- read.csv(te...
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## Put comments here that give an overall description of what your ## functions do ## The first function, makeCacheMatrix creates a special "marix", which is really a list containing a function to: ## 1. set the value of the matrix ## 2. get the value of the matrix ## 3. set the value of the inverse matrix ## 4. get t...
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# Have total emissions from PM2.5 decreased in the Baltimore City, Maryland # (fips == "24510") from 1999 to 2008? Use the base plotting system to make # a plot answering this question. library(dplyr) # This function assumes https://d396qusza40orc.cloudfront.net/exdata%2Fdata%2FNEI_data.zip has been downloaded and ex...
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library(weibulltools) ### Name: kaplan_method ### Title: Estimation of Failure Probabilities using Kaplan-Meier ### Aliases: kaplan_method ### ** Examples # Example 1 obs <- seq(10000, 100000, 10000) state <- c(0, 1, 1, 0, 0, 0, 1, 0, 1, 0) uic <- c("3435", "1203", "958X", "XX71", "abcd", "tz46", "fl...
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#load dplyr library(dplyr) library(tidyr) #Function to read and return the files readfiles <- function(filenametoreplace, filenametosubstitute) { currentpath <- rstudioapi::getSourceEditorContext()$path currentpath <- gsub(filenametoreplace,filenametosubstitute, currentpath) if(file.exists(currentpath)) { ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/extra.R \name{plot_close} \alias{plot_close} \title{Plot close prices from candle df} \usage{ plot_close(candle_df, yaxis = c("price", "return"), facet = FALSE) } \arguments{ \item{candle_df}{data frame returned from candles()} \item{yaxis}{...
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StripRepetitions <- function(phase) { phase=strsplit(phase,'')[[1]] phaseout=phase repetitions=NULL w=getOption('warn') options(warn=-1) if(!is.na(as.numeric(phase[length(phase)]))){ repstring=NULL done=0 len=length(phase) indy=len while( done==0){ if(!is.na(as.numeric(phase[indy]))){ ...
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#' Compute the gradient of the log-likelihood for the downstream model. #' #' @export #' @param wt Observationnal data, matrix of dimension N*2, where N stand for the number of replicate. #' The first column correspond to the knocked-out gene. #' @param ko Interventionnal data, matrix of dimension N*2, where N stand fo...
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load("results20162017.rda") cur.season <- season20162017 bets <- read.table(file = "00-datasets/20162017/players_bets.csv", header = TRUE, sep = ",", stringsAsFactors = F) load("players.rda") ##List of games to play with list.betted.games <- unique(bets$idmatch) nb.betted.games <- length(list.bett...
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\name{anyOf} \alias{anyOf} \title{Any given character} \usage{ anyOf(value) } \description{ Any given character }
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library(lubridate) #install.packages("lubridate") library(stringr) #install.packages("stringr") library(dplyr) #install.packages("dplyr") library(tidyr) #install.packages("tidyr") library(ggplot2) #Load Data RawData <- as.data.frame(read.csv("C:/users/Shwetha Hara/Downloads/Crimes_2012-2015.csv", stringsA...
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##### Function for converting psmc output file to history file ##### ### Testing ### # file_name = "French_upper.psmc" # name of psmc output file # n_iterations = 20 # u = 1.1e-08 psmc2history <- function(file_name, n_iterations, gen, u, from_file, save_output){ # file_name = name of PSMC output file or list of line...
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\docType{data} \name{ExampleAnswers} \alias{ExampleAnswers} \title{norm: items aggregated within scales} \format{a \code{data.frame} instance, 1 row per item (115 total).} \source{ simulated data set } \description{ This data set contains an example responses to a launched questionnaire object. The data would be ...
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# Here's a PCA on some Wedge Data. Give # this a look. Can you explain what's going # on here? library(dplyr) library(ggplot2) library(reshape2) library(scales) d <- readr::read_tsv("owner_level_top_prod_sales.txt") d <- d %>% filter(owner != 3) # To make our code run a bit faster and get rid of some extreme...
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\name{partri} \alias{partri} \title{Estimate the Parameters of the Asymmetric Triangular Distribution} \description{ This function estimates the parameters of the Asymmetric Triangular distribution given the L-moments of the data in an L-moment object such as that returned by \code{\link{lmoms}}. The relations between ...
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#' S4 Generics #' #' @rdname AllGenerics #' @name AllGenerics #' @keywords internal #' #' @param object Object. #' @param x Object. #' @param i An integer or numeric scalar. #' @param value Value to assign. #' @param withDimnames A `logical`, indicating whether dimnames should be #' applied to extracted assay element...
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library(tidyverse) #LOADING DATA PremierLeague2020 <- read.csv("english_premier_league_2020.csv", header = TRUE, sep = ",") PremierLeague2020PlayersIn <- read.csv("Prem2020PlayersIn.csv", header = TRUE, sep = ",") PremierLeague2019 <- read.csv("english_premier_league_2019.csv", header = TRUE, sep = ",") PremierL...
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calculate_coverage<-function(interactions,flag = TRUE){ # ########################################################## if(nrow(interactions)>1e8){ t <- ceiling(nrow(interactions)/1e8) IList <- list() IList[[1]] <- interactions[1:1e8,] for(i in 2:t){ IList[[i]] <- interactions[(((i...
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library(data.world) library(tidyverse) library(GGally) athletes <- read.csv('bgadoci-crossfit-data/data/athletes.csv') leaderboard <- read.csv('bgadoci-crossfit-data/data/leaderboard_15.csv') #Using an inner join, match on athlete ids that are in both dataframes cf <- leaderboard %>% inner_join(athletes, by="athlet...
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rm( list = ls() ) options(stringsAsFactors = FALSE) library(magrittr) library(shiny) library(RMySQL) library(rhandsontable) library(rlist) library(rjson) empty <- data.frame( QTY=as.integer(0), CardName=rep('',20), SetName = rep('',20), CNumber=rep('',20), Notes = rep('',20)...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/age_countries.R \name{age_df_countries} \alias{age_df_countries} \title{Get a data.frame (in long format) of population by age for multiple countries} \usage{ age_df_countries(countries) } \arguments{ \item{countries}{A character string or a ...
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\name{winequality-white.csv} \alias{winequality-white.csv} \docType{data} \title{ White wine dataset. } \description{ Dataset was created, using white wine samples. The inputs include objective tests (e.g. PH values) and the output is based on sensory data (median of at least 3 evaluations made by wine experts). } \usa...
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library(Mqrcm) ### Name: predict.iMqr ### Title: Prediction After M-Quantile Regression Coefficients Modeling ### Aliases: predict.iMqr ### Keywords: methods ### ** Examples # using simulated data n <- 250 x <- runif(n) y <- rlogis(n, 1 + x, 1 + x) # true quantile function: Q(p | x) = beta0(p) + beta1...
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library(dplyr, warn.conflicts = F) library(stringi, warn.conflicts = F) library(RPostgreSQL) library(lubridate, warn.conflicts = F) library(purrr, warn.conflicts = F) library(futile.logger) source("data_access.R") source("vereadores_logic.R") camara_db = start_camara_db() #* @get /ementas/contagem get_theme_count = f...
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library(mnis) context("mnis_extra") test_that("mnis_extra returns expected format", { skip_on_cran() xmnise <- mnis_extra(4019) expect_length(xmnise, 188) expect_type(xmnise, "list") expect_true(nrow(xmnise)==1) expect_true(tibble::is_tibble(xmnise)) })
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# -------------------------------------------------- # # Climate Risk Profiles -- Master code # A. Esquivel, H. Achicanoy, and J. Ramirez-Villegas # Alliance Bioversity-CIAT, 2021 # -------------------------------------------------- # # R options and load packages options(warn = -1, scipen = 999) suppressMessages(if(!...
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library(aurelius) x <- 1:4 weekday <- c("Sunday", "Sunday", "Monday", "Monday") y <- c(12, 14, 22, 24) data <- data.frame(x=x, weekday=weekday, y=y) model <- lm(y ~ ., data) write_pfa(pfa(model))
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library(highcharter) library(lubridate) # ymd library(dplyr) # group_by library(tidyr) #complete #Read market data df <- read.csv("marketPrices.csv") df$T <- as.Date(df$T) #Calculate the period-over-period percentage change at each point in time percentageCalc <- function(marketName){ marketData <- df[df$M...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/post_html.R \name{post_html_from_Rmd_addin} \alias{post_html_from_Rmd_addin} \title{htmlレポート転送用アドイン関数} \usage{ post_html_from_Rmd_addin() } \value{ \code{post_html_from_Rmd()} returns the URL of the html page. } \description{ RstudioのAddinsで関...
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markovchainListFit.Rd.R
library(markovchain) ### Name: markovchainListFit ### Title: markovchainListFit ### Aliases: markovchainListFit ### ** Examples # using holson dataset data(holson) # fitting a single markovchain singleMc <- markovchainFit(data = holson[,2:12]) # fitting a markovchainList mclistFit <- markovchainListFit(data = hols...
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################################################################################ # PredictoR.xgboost ################################################################################ ################################################################################ # External dependencies ################################...
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#--------------------------------------------------------------------------------------------------------- #! print.commodity < -function(x) : print commodity #--------------------------------------------------------------------------------------------------------- print.commodity <- function(x) { # print commodity...
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# Load data source('load_data.R') #open png file png(filename="plot2.png", width=480, height=480) #plot 2 now plot(data$DateTime, data$Global_active_power, type="l", col="black", xlab="", ylab="Global Active Power (kilowatts)", main="") #close the png file dev.off()
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## Put comments here that give an overall description of what your ## functions do ## Functions makeCacheMatrix and cacheSolve are used to create a ## special object that stores a matrix and cache's its inverse ## Write a short comment describing this function ## Function makeCacheMatrix makes list that has functi...
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grd.box.ts <- function(x,lon,lat,lev=NULL,what="abs",greenwich=TRUE,mon=NULL, col="grey10",lwd=1,lty=1,pch=".",add=FALSE, filter=NULL,type="l",main=NULL,sub=NULL,xlab=NULL,ylab=NULL, xlim=NULL,ylim=NULL) { library(akima) # library(ts) if ((cl...
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### Test gdxInfo # We get a list of symbol names from the transport data if (! require(gdxrrwMIRO)) stop ("gdxrrw package is not available") if (0 == igdx(silent=TRUE)) stop ("the gdx shared library has not been loaded") source ("chkSame.R") tryCatch({ fn <- "trnsport.gdx" s <- gdxInfo (fn, dump=FALSE, ret...
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rm(list=ls()) setwd("c:/usr/doc/") ## ‹³Žtƒf[ƒ^Ctestƒf[ƒ^‚̓ǂݍž‚έ dt.tr <- read.csv("mnist_train.csv",header=F) res.tr <- dt.tr[,1]; let.tr <- dt.tr[,2:(28*28+1)] ns.tr <- 60000 dt.te <- read.csv("mnist_test.csv",header=F) res.te <- dt.te[,1]; let.te <- dt.te[,2:(28*28+1)] ns.te <- 10000 ## ƒOƒŒ[ƒXƒP[...
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testlist <- list(x = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 65535L, -1L, -10726L, 805306367L, -1L, -16777216L ), y = integer(0)) result <- do.call(diffrprojects:::dist_mat_absolute,testlist) str(result)
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/Ocgrtools-package.r \docType{package} \name{Ocgrtools} \alias{Ocgrtools} \alias{Ocgrtools-package} \title{Ocgrtools: Visualize oceanographic datasets} \description{ Readlily plot depth profiles of ocean properties and utilize a dataset of var...
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# Our code here is mean to find the mean volume of the shrubs by a given group, site and experiment, respectively. shrub_data <- read.csv("shrub-volume-experiment.csv") shrub_data %>% mutate(volume = length * width * height) %>% group_by(site) %>% summarize(mean_volume = mean(volume)) shrub_data %>% mutate(v...
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A = -100 B = 100 x = list() y = list() plotPoints = function(accuracy) { plot(A:B, A:B, type="n", ylim=c(A,B)) grid = generatePoints(accuracy, 2) x = list() y = list() for(i in c(1:length(grid[1,,1]))) { for(j in c(1:length(grid[1,,1]))) { if(all(grid[i, j,] == c(-1,...
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setwd("~/Workspace/rnapipeline/tcga-rawcounts-comparison") load(file = "cancerRawCleanLegacy.RData") load(file = "healthyRawCleanLegacy.RData") load(file = "cancerRawClean.RData") load(file = "healthyRawClean.RData") ### Define Spearmans Function spearmanCorr <- function(newGenes, legacyGenes){ dim(newGenes) dim(...
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% % Copyright 2001 Mayo Foundation for Medical Education and Research. % % This program is free software; you can redistribute it and/or % modify it under the terms of the GNU General Public License % as published by the Free Software Foundation; either version 2 % of the License, or (at your option) any later versi...
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library(readxl) raw_data <- read_excel("~/Downloads/Data_Level5_BAH_OceanCleanup.xlsx") library(plotly) library(dplyr) library(tidyverse) library(ggplot2) plot(x = raw_data$State, y = ) # df = raw_data[, -1] # remove the ID column # df = unique(df) # get unique rows # write.csv(df, "~/Documents/GitHub/OceanCleanup/...
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### Fixing a 3D plot#### ## March 24, 2021 # Frank Muzio #------------------------------ library(ggplot2) library(ggpubr) head(mtcars) p1 <- ggplot(mtcars, aes(x = mpg, y = qsec)) p2 <- ggplot(mtcars, aes(x = mpg, y = hp)) p3 <- ggplot(mtcars, aes(x = qsec, y = hp)) p4 <- ggplot(mtcars, aes(x = disp, y ...
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% Generated by roxygen2 (4.1.1): do not edit by hand % Please edit documentation in R/compute_phenotype_function.R \name{predictionAccuracyByCv} \alias{predictionAccuracyByCv} \title{Cross validation on training dataset} \usage{ predictionAccuracyByCv(trainingExprData, trainingPtype, testExprData = -1, cvFold = -1, p...
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library(readr) library(dplyr) library(rgdal) library(ggplot2) library(maps) library(ggthemes) library(gganimate) library(hablar) library(mapproj) library(scales) library(RColorBrewer) library(ggmap) library(transformr) library(magick) # set wd setwd("C:/Projects/Personal/kosovo-covid-data/src") # Load data url_csv <-...
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##################################################################### # Title: ENVI_Indices # Name: Francisco Manuel Rodriguez Huerta # Date: 9 Abril 2014 # Description: Compute Indices ##################################################################### #Load required libraries require(raster) require(rgdal) ### no...
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library(climatol) ### Name: dd2m ### Title: Compute monthly data from daily series ### Aliases: dd2m ### Keywords: datagen ### ** Examples #Set a temporal working directory and write input files: wd <- tempdir() wd0 <- setwd(wd) data(Ttest) write(dat,'Ttest_1981-2000.dat') write.table(est.c,'Ttest_1981-2000.est',ro...
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library(shiny) library(ggplot2) library(dplyr) library(shinydashboard) datos <- read.csv("base2015_2020.csv") datos$año <- substr(datos$FECDIAG, start = 1, stop = 4) datos <- filter(datos, año %in% c("2015", "2016", "2017", "2018", "2019")) datos2 <- datos %>% group_by(TOP..cat.) %>% tally() %>% mutate(po...
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# install.packages("ggplot2") # install.packages("plyr") library(plyr) library(ggplot2) NEI <- readRDS("./exdata-data-NEI_data/summarySCC_PM25.rds") SCC <- readRDS("./exdata-data-NEI_data/Source_Classification_Code.rds") # subset the data to contain only LA informations losangelesdata <- subset(NEI, NEI$fips == "06037...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/pkgname.R \name{arguments} \alias{arguments} \title{Documentation} \arguments{ \item{y}{\strong{observations:} numeric vector of length \code{n}} \item{Y}{\strong{observations:} numeric vector of length \code{n}, or numeric matrix with \code...
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test_that("uptimerobot.account.details", { skip_on_cran() api.key <- Sys.getenv("KEY", "") account.details.list <- uptimerobot.account.details(api.key) # Output is a list expect_is(account.details.list, "list") # Output list has 5 elements expect_equal(length(account.details.lis...
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##' @title Stochastic Average Gradient ##' @param X Matrix, possibly sparse of features. ##' @param y Matrix of targets. ##' @param lambda Scalar. L2 regularization parameter. ##' @param maxiter Maximum number of iterations. ##' @param w Matrix of weights. ##' @param alpha constant step-size. Used only when fit_alg == ...
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################################################################### #### #### #### Sensitivity study 1: a distance-based spatial structure #### #### NIMBLE CAR model comparison #### #### ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/check_pedigree_parent.R \name{check_pedig_parent} \alias{check_pedig_parent} \title{Check Properties of Parents in a Pedigree} \usage{ check_pedig_parent( ps_pedig_path, ps_delim = "|", ps_id_col = "#IDTier", ps_sire_col = "IDVater", ...
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PearsonVII <- function(y,mu,sigma2,nu,delta) { Acum <- z <- vector(mode = "numeric", length = length(y)) sigma2a <- sigma2*(delta/nu) z <- (y-mu)/sqrt(sigma2a) Acum <- pt(z,df=nu) return(Acum) } AcumSlash <- function(y,mu,sigma2,nu) { Acum <- z <- vector(mode = "numeric", length = length(y)) ...
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library(XML) xml = xmlTreeParse("FR_BCKST66_TO_2017-34_0015.xml", useInternalNodes=TRUE,encoding = "UTF-8") # faut supprimer la balise Transaction et la remplacer app_number=xpathApply(xml, "//ApplicationNumber", xmlValue) app_d=xpathApply(xml, "//ApplicationDate", xmlValue) app_filling_place=xpathApply(xml, "//Fili...
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library(latex2exp) library(pBrackets) rootStates <- rbind(c(30,100), c(100,70), c(30,1), c(100,1), c(150,1)) rootStates <- rbind(c(20,5), c(70,5), c(100,5), c(170,5), c(210,5)) plot(0:270, 0:270*.5, col = 0, axes = F, xlab = "", ylab = "") text2 <- function(label, coordinates, cex, font) {text(label = label, x = coord...
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#Copyright (c) 2017 BT Plc (www.btplc.com) # #You should have received a copy of the MIT license along with Clew. #If not, see https://opensource.org/licenses/MIT config_utils = new.env() #Functions for checking validity of config.yml #Eventually this script will be generated by a build script #so that it can be buil...
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# Project 1 from coursera's Data Science Specialization: 4 - Exploratory Data Analysis course. # Reconstruct Plot 3: Global Active Power (kilowatts) over the period of of time of two days of the three submeters (1: kitchen, 2: laundry room, 3: HVAC) in the same graph. # The code in this file is intended to be easily us...
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## Generate documentation using roxygen #' Generate recruitment chain based on utilities. #' #' Generates a recruitment chain based on the given utilities \code{U} and \code{V}. Uses the multiple matching process I developed. This is the matching algorithm for the UNRANKED process (i.e., if a person recruits three p...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/compare_independent_groups.R \name{SESOI_upper_independent_func} \alias{SESOI_upper_independent_func} \title{SESOI upper threshold for \code{\link{compare_independent_groups}}} \usage{ SESOI_upper_independent_func(group_a, group_b, na.rm = FA...
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#!/usr/bin/Rscript i01<-length(c(TRUE)) i02<-i01+i01 i04<-i02+i02 i08<-i04+i04 i10<-i08+i08 i20<-i10+i10 i40<-i20+i20 cat(intToUtf8(i40+i08)) cat(intToUtf8(i40+i20+i04+i01)) cat(intToUtf8(i40+i20+i08+i04)) cat(intToUtf8(i40+i20+i08+i04)) cat(intToUtf8(i40+i20+i08+i04+i02+i01)) cat(intToUtf8(i20)) cat(intToUtf8(i40+i10+...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/naver_keyword.R \name{naver_keyword} \alias{naver_keyword} \title{Naver Suggest Search Terms - Search Level 2} \usage{ naver_keyword(keyword) } \arguments{ \item{keyword}{search terms, keywords which supports Korean as well.} } \description{ ...
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\name{Sample} \alias{Sample} \alias{Sample.rgasp} \alias{Sample.rgasp-class} \alias{Sample,rgasp-method} %- Also NEED an '\alias' for EACH other topic documented here. \title{ %% ~~function to do ... ~~ Sample for Robust GaSP model } \description{ %% ~~ A concise (1-5 lines) description of what the function does. ~~ ...
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rm(list=ls()) library(readr) library(data.table) library(dplyr) library(reshape) library(reshape2) setwd("/Users/vdpappu/Documents/Kaggle/In-Progress/AIR_BNB") df_sessions <- read_csv("./input/sessions.csv") user_sess <- subset(df_sessions,select=c("user_id","secs_elapsed")) df_sessionTime <- user_sess %>% ...
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#opening the data set data<-read.table("/cloud/project/household_power_consumption.txt",sep = ";", header = TRUE) #formating date type columns data$Date<-as.Date(data$Date, "%d/%m/%Y") # subsetting dates 2007-02-01 and 2007-02-02 newdata<-subset(data, Date=="2007-02-01"|Date=="2007-02-02") #Creating a new variable wit...
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N <- function(n) prettyNum(n, big.mark = ",") # top dir for the project topDir <- "../glycotreg/" # Public HTML for file downloads public_html <- "http://www.compbio.dundee.ac.uk/user/mgierlinski/glycotreg/" makeDirs <- function(topDir) { lapply(subDirs, function(d) paste0(topDir, d)) } # Sub-directories subDirs ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/description-data.r \docType{data} \name{vecYears} \alias{vecYears} \title{vecYears gives the years corr. to Y, i.e. from 1971 to 2099} \format{ vectors of length 129 } \usage{ data(vecYears) } \description{ vecYears gives the yea...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/profresp.R \docType{data} \name{profresp} \alias{profresp} \title{profresp data} \format{ This data frame contains the following columns: \describe{ \item{prof_cat:}{Level of professionalism 1 = novice 2 = average 3 = professional} \ite...
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## This is the beginning code to test Bob Holt's agreement indices ## Latest Revision Date: 11/04/2011 ## generate example data dat <- data.frame(id=1:10,rater1=c(0,1,2,3,4,5,6,7,8,9),rater2=c(1,2,3,4,5,6,7,8,9,9),rater3=c(9,8,7,6,5,4,3,2,1,0),rater4=c(3,2,5,6,9,8,1,2,4,0),group=gl(2,5)) dat.l <- reshape(IRRdatEx,va...
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library(ssh.utils) ### Name: ps.grep.remote ### Title: Checks for processes running on a local or remote machine. ### Aliases: ps.grep.remote ### ** Examples ## Not run: ##D # Check if Eclipse is running. ##D ps.grep.remote("Eclipse", remote = "") ##D # [1] TRUE ## End(Not run)
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/SigDFMethods.R \name{controls} \alias{controls} \title{get the controls attributes} \usage{ controls(sdf, verbose = FALSE) } \arguments{ \item{sdf}{a \code{SigDF}} \item{verbose}{print more messages} } \value{ the controls data frame } \desc...
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#' Generate nearby bases, e.g. for simulated annealing. #' @keywords internal basis_nearby <- function(current, alpha = 0.5, method = "linear") { method <- match.arg(method, c("linear", "geodesic")) new <- basis_random(nrow(current), ncol(current)) switch(method, linear = orthonormalise((1 - alpha) * current...
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############################################# # Set the Filenames feature.fn = paste("/data/data2/jab112/2014_mnase_manuscript/datasets/jab112_yeast_feature_files/replication_origins/", "oridb_acs_feature_file_curated_798_sites_timing_whitehouse_raw_oem_acs_seq.csv", sep = "" ) oridb_subnuc_density.fn = paste...
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# Parameters settings = list(K = 2, # number of pack sizes n = c(2, 6, 0), # number of units in size k I = 20, # maximum inventory T = 200000, # periods of simulations T0 = 200, # burn-in period tol = 1e-8, # convergence tolerance ...
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############################################################### # An ENGINE WITH ACTIVITY allows for the possibility that some # components (or genes) in an expression engine (or tissue) might # be transcriptionally inactive. Thus, the true biological signal # described previously should really be viewed as a mixt...
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#' Quitar todos los ceros de un dataframe, para quedarnos con observaciones completas #' #' Quitar todos los ceros del dataframe y quedarse solo con las filas con observaciones completas. #' @param dataframe Un dataframe variables. #' #' @return quitar ceros del vector. #' @export #' #' @examples #' df<-sin_cerosDF(i...
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################################################################ # return level - Plot functions in package distrMod ################################################################ setMethod("returnlevelplot", signature(x = "ANY", y = "UnivariateDistribution"), function(x, ...
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library(RMySQL) #Load csv file to R customer <-read.csv(file = "C:/Users/User/Desktop/Assignment_1_Customers.csv", header=TRUE,sep=",",stringsAsFactors = FALSE) #Connect to the DataBase mydb <- dbConnect(MySQL(),user='root',password='Lt2091992!', dbname='dmbi_assignment1'...
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\name{Control Forest Hyper Parameters} \alias{cforest_control} \alias{cforest_classical} \alias{cforest_unbiased} \title{ Control for Conditional Tree Forests } \description{ Various parameters that control aspects of the `cforest' fit via its `control' argument. } \usage{ cforest_unbiased(\dots) cforest_classica...
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#====================================================== # Example 9.1.1 on Page 425 # Test H0: random versus H1: not random #------------------------------------------------------ data = c(5,8,3,1,9,4,6,7,9,2,6,3,0, 8,7,5,1,3,6,2,1,9,5,4,8,0, 3,7,1,4,6,0,4,3,8,2,7,3,9, 8,5,6,1,8,7,...
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#need more attributes, col etc umlmerge = function (...) { m = extend (list (...), "umlca") for (con in m) con$m = 0 m$n = length (m) m$col = m [[1]]$col m$fill = m [[1]]$fill m [[1]]$m = m invisible (m) } plot.umlca = function (ca, ...) { #note, no validation #plus for now, assume all composite arrows are nort...
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setwd("C:/Users/wuf2/Documents/GitHub/note-on-visualize-this/ch04-flowingdata_subscribers") subscribers <- read.csv("flowingdata_subscribers.csv", sep=",", header=TRUE) plot(subscribers$Subscribers, type="p", ylim=c(0, 30000)) plot(subscribers$Subscribers, type="h", ylim=c(0, 30000), xlab="Day", ylab="Subscribers")...
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rmse_count.R
# #author vedraiyani # # @return vector of rms and rms error percentage # rmse_count<-function(){ #read dataset data <- read.csv("./ml-100k/u2.test",FALSE,"\t"); #data=testSet; count=length(data[,1]); sum=0 for(i in 1:count){ predictedRating=predict_rating(data[i,1],data[i,2]); sum=sum+(data[i,3...
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library(rvest) library(stringr) source("~/UCSD-bus\ map/get_text.R") route_id = c('2092','312','314','1263','1264','1114','1113','3442','3440','3159','1098','2399','1434','313','3849') route = route_id[8] ##### Data Scraping get_data = function(route_id) { url = paste0('https://ucsdbus.com/Route/',route_id[1],"/Vehic...
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M_constraint_prim.R
### Function for nutrient N constraint in medium term # considering priming effect on slow SOM M_constraint_prim <- function(df, a, C_pass, C_slow, Nin_L) { # passed are df and a, the allocation and plant N:C ratios # parameters : # Nin is fixed N inputs (N deposition annd fixation) in g m-2 yr-1 (could ...
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test_methods.R
# test methods for growmod S3 class library(growmod) SEED <- 12345 set.seed(SEED) ITER <- 10 CHAINS <- 2 SW <- suppressWarnings data_test <- growmod_sim() capture.output( SW(mod1 <- growmod(size ~ (index | block / predictors), data = data_test, model = 'hillslope', ...
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Exp2_Choice_Modelling.R
##libraries library("prefmod", lib.loc="~/R/win-library/3.2") ##DATA SETTING setwd("C:/Users/K56CA/Dropbox/Big Data/Robust Methods R")#cambiar exp <- read.csv("bltexp2.csv") # cambiar... exp2 <- llbt.design(exp, nitems = 5, cat.scovs = "cond") gr <- factor(exp2$cond) names(exp2)[5:9] <- c("GIFT50", "GIFT75", "GIFT25...
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ngreifer/cobalt
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bal.tab.designmatch.R
#' @title Balance Statistics for `designmatch` Objects #' @description Generates balance statistics for output objects from \pkg{designmatch}. #' #' @inheritParams bal.tab.Match #' @param x the output of a call to \pkgfun{designmatch}{bmatch} or related wrapper functions from the \pkg{designmatch} package. #' @param s...
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sawasakakazuma/GettingAndCleaningData_Pre-trial
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run_analysis.R
train <- read.table("./UCI HAR Dataset/train/X_train.txt") test <- read.table("./UCI HAR Dataset/test/X_test.txt") concat <- rbind(train,test) nameTable <- read.table("./UCI HAR Dataset/features.txt") names(concat) <- nameTable[,2] selected <- concat[,grep("(mean()|std())",names(concat))] subject_train <- read.table(...
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usegalaxy-eu/temporary-tools
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chemometrics.Rd
\name{chemometrics} \alias{chemometrics} \docType{data} \title{ Chemometrics data set from Sardy (2008) } \description{ Fuel octane level measurements with sample size N = 434 and P = 351 spectrometer measurements. } \usage{data(chemometrics)} \format{ A data frame with 434 observations on the following 2 ...
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DHLaurel/DHLaurel.github.io
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server.R
# # The skeleton code for the below was largely generated by ChatGPT. Thanks ChatGPT! # This is the server logic of a Shiny web application. You can run the # application by clicking 'Run App' above. # # Find out more about building applications with Shiny here: # # http://shiny.rstudio.com/ # library(shiny) libr...
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team9.r
#params <-list(series=1:10,lookback1=26,lookback2=12,lookback3=40, #params for pairs trading #spreadPercentage=0.8,maxPositionSize=70, #params for limit order #lookbackB=11,sdParam=1.2,seriesB=1:10, #params for bbands #lookbackM=37...
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openfields/Ambcitsci
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parscensims.R
# scenario simulations - first run #out <- array(dim=c(50,2,100), data=NA) #system.time(for(i in 1:100){ #out[,,i] <- popsim(nyears=50, init_pop=c(100,100), dphi_sa = .9986, pr_b= .4230, nb_dphi = .9992, a_in_night_prob = c(0.333,0.333,0.334), # a_rmort = 0.0407, a_in_num_guards = c(0,0,0), guard_limit = 10, a_...
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cristianhernan/austral-mcd-aid
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Berkeley.R
library(readxl) # Permite leer archivos xlsx Berkeley=read_excel("C:/.../Berkeley.xlsx") # Importa la base con la cual se va a trabajar attach(Berkeley) # Fija la base de datos donde se trabaja tabla.sexo=table(Sexo,Admisión) # Calcula la frecuencias por Sexo y Admisión colnames(tabla.sexo)=c("NO","SI") # Cambia de ...