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Datasets:
plantcad
/
genecad-dev

Tasks:
Token Classification
Text Generation
Tags:
genomics
gene-prediction
plants
animals
License:
Dataset card Files
xet
 Community
genecad-dev

Commit History

  1. Arabidopsis Chr5 example output

    zongyanliu
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    1eb7812

  1. Upload folder using huggingface_hub

    emarro
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    93d78bd

  1. Delete GCA_978657495.1_TAIR12_genomic_OZ408687.1.gff⁠

    emarro
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  2. Upload data/plant/gff/example/GCA_978657495.1_TAIR12_genomic_OZ408687.1.gff with huggingface_hub

    emarro
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    e7d186d

  3. Delete data/plant/gff/example

    emarro
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    acaa392

  4. Upload data/plant/gff/example with huggingface_hub

    emarro
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    1b955a2

  5. Upload GCA_978657495.1_TAIR12_genomic_OZ408687.1.gff with huggingface_hub

    emarro
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    c155430

  1. Upload data/plant/gff/training/Zmarina_top_transcript.gff3 with huggingface_hub

    zongyanliu
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    a4c7939

  2. Upload data/plant/gff/training/Ncolorata_top_transcript.gff3 with huggingface_hub

    zongyanliu
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    c55f119

  3. Upload data/plant/gff/training/Dcarota_top_transcript.gff3 with huggingface_hub

    zongyanliu
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    1ec3e3e

  4. Upload data/plant/gff/training/Ckanehirae_top_transcript.gff3 with huggingface_hub

    zongyanliu
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  5. Upload data/plant/gff/training/Acoerulea_top_transcript.gff3 with huggingface_hub

    zongyanliu
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  6. Upload data/plant/fasta/training/Zmarina.softmasked_all.fa.gz with huggingface_hub

    zongyanliu
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    502fe32

  7. Upload data/plant/fasta/training/Ncolorata.softmasked_all.fa.gz with huggingface_hub

    zongyanliu
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    d73ea14

  8. Upload data/plant/fasta/training/Dcarota.softmasked_all.fa.gz with huggingface_hub

    zongyanliu
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    454b959

  9. Upload data/plant/fasta/training/Ckanehirae.softmasked_all.fa.gz with huggingface_hub

    zongyanliu
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  10. Upload data/plant/fasta/training/Acoerulea.softmasked_all.fa.gz with huggingface_hub

    zongyanliu
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    ca2625a

  1. Add GeneCAD prediction FASTA and GFF outputs

    zongyanliu
    87cb389

  1. modify file structure and add animal data

    zongyanliu
    7d85e68

  1. Standardise dataset: compress all FASTA to .fa.gz, clean names, remove duplicates

    zongyanliu
    c844d6a

  2. Add GeneCAD multi-species training data (5 species)

    zongyanliu
    df74284

  3. add Arabidopsis TAIR12 chromosome 5 genomic sequence (GCA_978657495.1)⁠

    Zong-Yan Liu
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    a373783

  1. upload GeneCAD example output⁠

    Zong-Yan Liu
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    4d38b23

  1. Upload data/fasta/Zea_mays-B73-REFERENCE-NAM-5.0.fa.gz with huggingface_hub

    eczech
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  2. Upload data/fasta/Sviridis_726_v4.0.fa with huggingface_hub

    eczech
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  3. Upload data/fasta/Phaseolus_vulgaris-2.0.2_chr1.fasta with huggingface_hub

    eczech
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    7464bcc

  4. Upload data/fasta/Nicotiana_tabacum_genome.fa.gz with huggingface_hub

    eczech
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  5. Upload data/fasta/Nicotiana_tabacum_genome_chr1.fa.gz with huggingface_hub

    eczech
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  6. Upload data/fasta/Nicotiana_tabacum_genome_chr1_clean.fa.gz with huggingface_hub

    eczech
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  7. Upload data/fasta/Nicotiana_sylvestris_genome_chr1.fa.gz with huggingface_hub

    eczech
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  8. Upload data/fasta/Nicotiana_sylvestris_genome_chr1_clean.fa.gz with huggingface_hub

    eczech
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  9. Upload data/fasta/Juglans_regia.Walnut_2.0.dna.toplevel_chr1.fa with huggingface_hub

    eczech
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  10. Upload data/fasta/Coffea_arabica_geisha.final_chr1.fasta with huggingface_hub

    eczech
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  11. Upload data/gff/Zea_mays-B73-REFERENCE-NAM-5.0_Zm00001eb.1.gff3.gz with huggingface_hub

    eczech
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    e18bbba

  12. Upload data/gff/Zea_mays-B73-REFERENCE-NAM-5.0_Zm00001eb.1.gff3 with huggingface_hub

    eczech
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  13. Upload data/gff/Sviridis_726_v4.1.gene.gff3 with huggingface_hub

    eczech
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    940478c

  14. Upload data/gff/Pvulgaris.Annotation-EGN-EP-2.0.2.gff with huggingface_hub

    eczech
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  15. Upload data/gff/Phaseolus_vulgaris-2.0.2_chr1.gff with huggingface_hub

    eczech
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  16. Upload data/gff/Nicotiana_tabacum_annotation.gff3 with huggingface_hub

    eczech
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  17. Upload data/gff/Nicotiana_sylvestris_annotation.gff3 with huggingface_hub

    eczech
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  18. Upload data/gff/Juglans_regia.Walnut_2.0.60.gff3 with huggingface_hub

    eczech
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  19. Upload data/gff/Juglans_regia.Walnut_2.0.60_chr1.gff3 with huggingface_hub

    eczech
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  20. Upload data/gff/Coffea_arabica_geisha.annotation.gff3 with huggingface_hub

    eczech
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  21. Upload data/gff/Coffea_arabica_geisha.annotation_chr1.gff3 with huggingface_hub

    eczech
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  22. initial commit

    eczech
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