| { |
| "name": "cellmap", |
| "description": "CellMap segmentation-challenge benchmark over the OpenOrganelle volumes (CellMap-annotated _crop volumes). The _test0/_test1 volumes are lab self-annotated and belong to mitoem2.0, so they are excluded here. Official challenge train/val/test to be applied; all listed as train for now.", |
| "arrays": { |
| "image": "img", |
| "label": "mito" |
| }, |
| "samples": { |
| "jrc_cos7-1a": 9, |
| "jrc_cos7-1b": 6, |
| "jrc_ctl-id8-1": 3, |
| "jrc_fly-mb-1a": 3, |
| "jrc_fly-vnc-1": 6, |
| "jrc_hela-2": 7, |
| "jrc_hela-3": 5, |
| "jrc_jurkat-1": 7, |
| "jrc_macrophage-2": 5, |
| "jrc_mus-kidney": 19, |
| "jrc_mus-liver": 16, |
| "jrc_mus-liver-zon-1": 24, |
| "jrc_mus-liver-zon-2": 8, |
| "jrc_mus-nacc-1": 1, |
| "jrc_sum159-1": 2, |
| "jrc_sum159-4": 10, |
| "jrc_ut21-1413-003": 14, |
| "jrc_zf-cardiac-1": 2 |
| }, |
| "volumes": [ |
| { |
| "id": "openorganelle_jrc_cos7-1a_recon-1_crop234", |
| "zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop234.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_cos7-1a_recon-1_crop236", |
| "zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop236.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_cos7-1a_recon-1_crop237", |
| "zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop237.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_cos7-1a_recon-1_crop239", |
| "zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop239.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_cos7-1a_recon-1_crop248", |
| "zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop248.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_cos7-1a_recon-1_crop252", |
| "zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop252.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_cos7-1a_recon-1_crop254", |
| "zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop254.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_cos7-1a_recon-1_crop256", |
| "zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop256.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_cos7-1a_recon-1_crop292", |
| "zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop292.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_cos7-1b_recon-1_crop238", |
| "zarr": "data/openorganelle/jrc_cos7-1b_recon-1_crop238.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_cos7-1b_recon-1_crop240", |
| "zarr": "data/openorganelle/jrc_cos7-1b_recon-1_crop240.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_cos7-1b_recon-1_crop245", |
| "zarr": "data/openorganelle/jrc_cos7-1b_recon-1_crop245.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_cos7-1b_recon-1_crop255", |
| "zarr": "data/openorganelle/jrc_cos7-1b_recon-1_crop255.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_cos7-1b_recon-1_crop258", |
| "zarr": "data/openorganelle/jrc_cos7-1b_recon-1_crop258.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_cos7-1b_recon-1_crop291", |
| "zarr": "data/openorganelle/jrc_cos7-1b_recon-1_crop291.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_ctl-id8-1_recon-1_crop116", |
| "zarr": "data/openorganelle/jrc_ctl-id8-1_recon-1_crop116.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_ctl-id8-1_recon-1_crop118", |
| "zarr": "data/openorganelle/jrc_ctl-id8-1_recon-1_crop118.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_ctl-id8-1_recon-1_crop130", |
| "zarr": "data/openorganelle/jrc_ctl-id8-1_recon-1_crop130.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_fly-mb-1a_recon-1_crop120", |
| "zarr": "data/openorganelle/jrc_fly-mb-1a_recon-1_crop120.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_fly-mb-1a_recon-1_crop121", |
| "zarr": "data/openorganelle/jrc_fly-mb-1a_recon-1_crop121.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_fly-mb-1a_recon-1_crop178", |
| "zarr": "data/openorganelle/jrc_fly-mb-1a_recon-1_crop178.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_fly-vnc-1_recon-1_crop173", |
| "zarr": "data/openorganelle/jrc_fly-vnc-1_recon-1_crop173.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_fly-vnc-1_recon-1_crop174", |
| "zarr": "data/openorganelle/jrc_fly-vnc-1_recon-1_crop174.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_fly-vnc-1_recon-1_crop176", |
| "zarr": "data/openorganelle/jrc_fly-vnc-1_recon-1_crop176.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_fly-vnc-1_recon-1_crop185", |
| "zarr": "data/openorganelle/jrc_fly-vnc-1_recon-1_crop185.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_fly-vnc-1_recon-1_crop78", |
| "zarr": "data/openorganelle/jrc_fly-vnc-1_recon-1_crop78.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_fly-vnc-1_recon-1_crop79", |
| "zarr": "data/openorganelle/jrc_fly-vnc-1_recon-1_crop79.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_hela-2_recon-1_crop1", |
| "zarr": "data/openorganelle/jrc_hela-2_recon-1_crop1.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_hela-2_recon-1_crop113", |
| "zarr": "data/openorganelle/jrc_hela-2_recon-1_crop113.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_hela-2_recon-1_crop155", |
| "zarr": "data/openorganelle/jrc_hela-2_recon-1_crop155.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_hela-2_recon-1_crop23", |
| "zarr": "data/openorganelle/jrc_hela-2_recon-1_crop23.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_hela-2_recon-1_crop3", |
| "zarr": "data/openorganelle/jrc_hela-2_recon-1_crop3.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_hela-2_recon-1_crop6", |
| "zarr": "data/openorganelle/jrc_hela-2_recon-1_crop6.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_hela-2_recon-1_crop9", |
| "zarr": "data/openorganelle/jrc_hela-2_recon-1_crop9.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_hela-3_recon-1_crop101", |
| "zarr": "data/openorganelle/jrc_hela-3_recon-1_crop101.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_hela-3_recon-1_crop111", |
| "zarr": "data/openorganelle/jrc_hela-3_recon-1_crop111.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_hela-3_recon-1_crop181", |
| "zarr": "data/openorganelle/jrc_hela-3_recon-1_crop181.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_hela-3_recon-1_crop33", |
| "zarr": "data/openorganelle/jrc_hela-3_recon-1_crop33.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_hela-3_recon-1_crop34", |
| "zarr": "data/openorganelle/jrc_hela-3_recon-1_crop34.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_jurkat-1_recon-1_crop112", |
| "zarr": "data/openorganelle/jrc_jurkat-1_recon-1_crop112.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_jurkat-1_recon-1_crop126", |
| "zarr": "data/openorganelle/jrc_jurkat-1_recon-1_crop126.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_jurkat-1_recon-1_crop180", |
| "zarr": "data/openorganelle/jrc_jurkat-1_recon-1_crop180.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_jurkat-1_recon-1_crop182", |
| "zarr": "data/openorganelle/jrc_jurkat-1_recon-1_crop182.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_jurkat-1_recon-1_crop37", |
| "zarr": "data/openorganelle/jrc_jurkat-1_recon-1_crop37.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_jurkat-1_recon-1_crop38", |
| "zarr": "data/openorganelle/jrc_jurkat-1_recon-1_crop38.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_jurkat-1_recon-1_crop43", |
| "zarr": "data/openorganelle/jrc_jurkat-1_recon-1_crop43.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_macrophage-2_recon-1_crop110", |
| "zarr": "data/openorganelle/jrc_macrophage-2_recon-1_crop110.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_macrophage-2_recon-1_crop31", |
| "zarr": "data/openorganelle/jrc_macrophage-2_recon-1_crop31.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_macrophage-2_recon-1_crop32", |
| "zarr": "data/openorganelle/jrc_macrophage-2_recon-1_crop32.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_macrophage-2_recon-1_crop39", |
| "zarr": "data/openorganelle/jrc_macrophage-2_recon-1_crop39.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_macrophage-2_recon-1_crop48", |
| "zarr": "data/openorganelle/jrc_macrophage-2_recon-1_crop48.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop129", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop129.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop140", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop140.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop141", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop141.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop147", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop147.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop148", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop148.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop156", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop156.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop158", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop158.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop160", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop160.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop161", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop161.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop162", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop162.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop163", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop163.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop164", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop164.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop165", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop165.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop166", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop166.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop184", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop184.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop221", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop221.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop229", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop229.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop230", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop230.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-kidney_recon-1_crop231", |
| "zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop231.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop266", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop266.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop267", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop267.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop268", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop268.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop269", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop269.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop270", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop270.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop272", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop272.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop273", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop273.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop274", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop274.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop275", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop275.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop276", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop276.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop277", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop277.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop279", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop279.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop298", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop298.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop313", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop313.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop319", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop319.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop320", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop320.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop321", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop321.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop322", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop322.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop323", |
| "zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop323.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop325", |
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| "split": "train" |
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| "split": "train" |
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| { |
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| "zarr": "data/openorganelle/jrc_ut21-1413-003_recon-1_crop199.zarr", |
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| { |
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| { |
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| "zarr": "data/openorganelle/jrc_ut21-1413-003_recon-1_crop220.zarr", |
| "split": "train" |
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| { |
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| "zarr": "data/openorganelle/jrc_ut21-1413-003_recon-1_crop222.zarr", |
| "split": "train" |
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| { |
| "id": "openorganelle_jrc_ut21-1413-003_recon-1_crop225", |
| "zarr": "data/openorganelle/jrc_ut21-1413-003_recon-1_crop225.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_ut21-1413-003_recon-1_crop227", |
| "zarr": "data/openorganelle/jrc_ut21-1413-003_recon-1_crop227.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_zf-cardiac-1_recon-1_crop380", |
| "zarr": "data/openorganelle/jrc_zf-cardiac-1_recon-1_crop380.zarr", |
| "split": "train" |
| }, |
| { |
| "id": "openorganelle_jrc_zf-cardiac-1_recon-1_crop381", |
| "zarr": "data/openorganelle/jrc_zf-cardiac-1_recon-1_crop381.zarr", |
| "split": "train" |
| } |
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| } |
