Removed 56 files in Generation_Model/End2end/Archived/ (legacy single-run experiments, not used by current figures). Removed obsolete Candidate_Analysis/AMP_{active_druglike,potent_druglike}.csv, replaced by AMP_active.csv (39,891 active candidates) + AMP_hit.csv (799 hits, triple filter) generated after the AMP ensemble retrain on MIC-only DBAASP. All other per-stage and end-to-end metrics re-uploaded; LFS dedup keeps unchanged content.
refactor: convert raw.json to raw.jsonl for consistency
