Daniel Rabottini commited on
Commit ·
e39fb0a
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Parent(s):
Add the RadGraph-IT dataset
Browse files- .gitattributes +60 -0
- README.md +97 -0
- data/radgraph_it_50.jsonl +0 -0
.gitattributes
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README.md
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| 1 |
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---
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pretty_name: RadGraph-IT
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language:
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- it
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task_categories:
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- token-classification
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size_categories:
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- n<1K
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tags:
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- radiology
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- clinical-nlp
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- named-entity-recognition
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- relation-extraction
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- radgraph
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- italian
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configs:
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- config_name: sample
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data_files:
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- split: train
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path: data/radgraph_it_50.jsonl
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---
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# RadGraph-IT Dataset
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## Dataset summary
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RadGraph-IT contains 2,850 Italian radiology reports with entity and relation
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annotations in a DyGIE-compatible JSONL format. The corpus combines 2,300
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reports from [RadGraph-XL](https://aclanthology.org/2024.findings-acl.765/)
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with 550 reports derived from
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[RadGraph 1.0](https://physionet.org/content/radgraph/1.0.0/).
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This repository provides a 50-report excerpt of the corpus used for training.
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The complete RadGraph-IT corpus is not currently available for publication.
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The full corpus includes 1,050 chest X-ray reports, 600 chest CT reports, 600
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abdomen/pelvis CT reports, and 600 brain MRI reports.
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## Translation and manual review
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All 2,850 English reports were localized with the English-to-Italian pipeline
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developed for the thesis *AI-Driven Keyword Extraction and Structuralization
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of Medical Reports* and released in the
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[`EIDOSLAB/radiomicslab-keyword-extraction`](https://github.com/EIDOSLAB/radiomicslab-keyword-extraction)
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repository.
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After translation and span remapping, the localized reports and projected
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annotations were manually reviewed. The Italian text, entity boundaries,
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entity labels, and relations were corrected where necessary.
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## Annotation schema
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Each entity is a contiguous, inclusive token span assigned one of six labels:
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- `Anatomy::definitely present`
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- `Anatomy::uncertain`
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- `Anatomy::definitely absent`
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- `Observation::definitely present`
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- `Observation::uncertain`
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- `Observation::definitely absent`
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Entities are connected by three directed relation types:
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- `located_at`: an Observation and its anatomical site;
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- `suggestive_of`: an Observation and another observation that it suggests;
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- `modify`: two Observations or two Anatomy entities when one qualifies the
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other.
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## Data format
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The included [`data/radgraph_it_50.jsonl`](data/radgraph_it_50.jsonl)
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uses the same representation consumed by the training stack. Each line is one
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JSON object with:
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- `dataset`: a provenance-aware RadGraph-IT source and modality label, such as
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`radgraph-it-stanford-chest-x-ray`;
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- `doc_key`: the numeric index from the original source subset; the pair
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`(dataset, doc_key)` uniquely identifies and traces each report;
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- `sentences`: a list containing the tokenized report;
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- `ner`: entity tuples `[start, end, label]`, with inclusive token indices;
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- `relations`: directed relation tuples
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`[source_start, source_end, target_start, target_end, label]`, with inclusive
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token indices.
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The entire report is represented as one DyGIE "sentence" so relations can
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connect entities anywhere in the report.
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## Sample distribution
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The 50-report excerpt is distributed across the four imaging modalities as follows:
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| Modality | Sample reports |
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|---|---:|
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| Chest X-ray | 18 |
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| Chest CT | 11 |
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| Abdomen/pelvis CT | 11 |
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| Brain MRI | 10 |
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| **Total** | **50** |
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data/radgraph_it_50.jsonl
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