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Add the RadGraph-IT dataset

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  2. README.md +97 -0
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README.md ADDED
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+ ---
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+ pretty_name: RadGraph-IT
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+ language:
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+ - it
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+ task_categories:
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+ - token-classification
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+ size_categories:
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+ - n<1K
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+ tags:
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+ - radiology
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+ - clinical-nlp
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+ - named-entity-recognition
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+ - relation-extraction
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+ - radgraph
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+ - italian
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+ configs:
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+ - config_name: sample
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+ data_files:
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+ - split: train
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+ path: data/radgraph_it_50.jsonl
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+ ---
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+
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+ # RadGraph-IT Dataset
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+
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+ ## Dataset summary
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+
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+ RadGraph-IT contains 2,850 Italian radiology reports with entity and relation
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+ annotations in a DyGIE-compatible JSONL format. The corpus combines 2,300
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+ reports from [RadGraph-XL](https://aclanthology.org/2024.findings-acl.765/)
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+ with 550 reports derived from
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+ [RadGraph 1.0](https://physionet.org/content/radgraph/1.0.0/).
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+
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+ This repository provides a 50-report excerpt of the corpus used for training.
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+ The complete RadGraph-IT corpus is not currently available for publication.
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+ The full corpus includes 1,050 chest X-ray reports, 600 chest CT reports, 600
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+ abdomen/pelvis CT reports, and 600 brain MRI reports.
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+
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+ ## Translation and manual review
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+
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+ All 2,850 English reports were localized with the English-to-Italian pipeline
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+ developed for the thesis *AI-Driven Keyword Extraction and Structuralization
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+ of Medical Reports* and released in the
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+ [`EIDOSLAB/radiomicslab-keyword-extraction`](https://github.com/EIDOSLAB/radiomicslab-keyword-extraction)
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+ repository.
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+
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+ After translation and span remapping, the localized reports and projected
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+ annotations were manually reviewed. The Italian text, entity boundaries,
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+ entity labels, and relations were corrected where necessary.
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+
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+ ## Annotation schema
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+
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+ Each entity is a contiguous, inclusive token span assigned one of six labels:
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+
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+ - `Anatomy::definitely present`
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+ - `Anatomy::uncertain`
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+ - `Anatomy::definitely absent`
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+ - `Observation::definitely present`
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+ - `Observation::uncertain`
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+ - `Observation::definitely absent`
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+
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+ Entities are connected by three directed relation types:
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+
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+ - `located_at`: an Observation and its anatomical site;
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+ - `suggestive_of`: an Observation and another observation that it suggests;
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+ - `modify`: two Observations or two Anatomy entities when one qualifies the
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+ other.
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+
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+ ## Data format
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+
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+ The included [`data/radgraph_it_50.jsonl`](data/radgraph_it_50.jsonl)
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+ uses the same representation consumed by the training stack. Each line is one
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+ JSON object with:
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+
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+ - `dataset`: a provenance-aware RadGraph-IT source and modality label, such as
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+ `radgraph-it-stanford-chest-x-ray`;
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+ - `doc_key`: the numeric index from the original source subset; the pair
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+ `(dataset, doc_key)` uniquely identifies and traces each report;
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+ - `sentences`: a list containing the tokenized report;
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+ - `ner`: entity tuples `[start, end, label]`, with inclusive token indices;
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+ - `relations`: directed relation tuples
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+ `[source_start, source_end, target_start, target_end, label]`, with inclusive
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+ token indices.
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+
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+ The entire report is represented as one DyGIE "sentence" so relations can
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+ connect entities anywhere in the report.
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+
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+ ## Sample distribution
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+
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+ The 50-report excerpt is distributed across the four imaging modalities as follows:
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+
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+ | Modality | Sample reports |
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+ |---|---:|
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+ | Chest X-ray | 18 |
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+ | Chest CT | 11 |
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+ | Abdomen/pelvis CT | 11 |
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+ | Brain MRI | 10 |
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+ | **Total** | **50** |
data/radgraph_it_50.jsonl ADDED
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