Update README.md
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README.md
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@@ -47,8 +47,8 @@ file_path_embs = hf_hub_download("recursionpharma/rxrx3-core", filename="OpenPhe
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open_phenom_embeddings = pd.read_parquet(file_path_embs)
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rxrx3_core_metadata = pd.read_csv(file_path_metadata)
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```
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The metadata can be found in `metadata_rxrx3_core.csv` in this repository. The schema of the metadata is as follows:
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@@ -66,7 +66,6 @@ The metadata can be found in `metadata_rxrx3_core.csv` in this repository. The s
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| cell_type | HUVEC | |
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| well_type_label | Indicates experimental control information | |
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The `well_type_label` column includes the following values:
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| well_type_label | Description |
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| CRISPR Gene Positive Controls | Control genes that are exon-targeting CRISPR guides that are used as controls, there are five genes with 6 guides each that target the exon region of the gene
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| Control Compounds + Intron control | Control compound on an intron-targeting CRISPR background
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### Metadata Example
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To help understand the metadata, we have included some samples to enable parser testing and validation
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well_id,experiment_name,plate,address,gene,treatment,SMILES,concentration,perturbation_type,cell_type,well_type_label
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open_phenom_embeddings = pd.read_parquet(file_path_embs)
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rxrx3_core_metadata = pd.read_csv(file_path_metadata)
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```
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---
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Metadata
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The metadata can be found in `metadata_rxrx3_core.csv` in this repository. The schema of the metadata is as follows:
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| cell_type | HUVEC | |
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| well_type_label | Indicates experimental control information | |
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The `well_type_label` column includes the following values:
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| well_type_label | Description |
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| CRISPR Gene Positive Controls | Control genes that are exon-targeting CRISPR guides that are used as controls, there are five genes with 6 guides each that target the exon region of the gene
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| Control Compounds + Intron control | Control compound on an intron-targeting CRISPR background
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To help understand the metadata, we have included some samples to enable parser testing and validation
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well_id,experiment_name,plate,address,gene,treatment,SMILES,concentration,perturbation_type,cell_type,well_type_label
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