yrunhaar commited on
Commit
936be18
·
verified ·
1 Parent(s): c3aba92

marinedata release v1.1.1 (open): card

Browse files
Files changed (1) hide show
  1. README.md +31 -3
README.md CHANGED
@@ -123,6 +123,10 @@ configs:
123
  path: data/semseg/validation-*.parquet
124
  - split: test
125
  path: data/semseg/test-*.parquet
 
 
 
 
126
  - config_name: instances
127
  data_files:
128
  - split: train
@@ -668,6 +672,26 @@ dataset_info:
668
  num_examples: 559
669
  download_size: 1323438
670
  dataset_size: 1323438
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
671
  - config_name: instances
672
  features:
673
  - name: image_sha256
@@ -906,12 +930,12 @@ Reef Support Marine Data v1.1.0 adds 11 configurations to the frozen v1.0 releas
906
 
907
  | Field | Value |
908
  |---|---|
909
- | Configurations | 11: `images`, `metadata`, `points`, `bleaching`, `boxes`, `semseg`, `instances`, `benthic-cover`, `taxonomy`, `label-map`, `sources` |
910
  | Images (`metadata` rows) | 65,356 |
911
  | Sources | 14 |
912
  | Format | Parquet shards, streamable; images and new masks embedded once |
913
  | Size of the new configs | 19.1 GB |
914
- | Version | v1.1.0, built 2026-10-17 |
915
  | Code | [github.com/reefsupport/marine-data](https://github.com/reefsupport/marine-data) |
916
 
917
  ## Supported tasks
@@ -965,6 +989,7 @@ duckdb.sql("""
965
  - `bleaching` (38 columns): `image_sha256`, `source_id`, `source_version`, `ann_id`, `label_native`, `label_native_id`, `label_set`, `taxon_node_id`, `form_node_id`, `condition_node_id`, `taxon_rank`, `worms_aphia_id`, `rs_benthic_code`, `match_type`, and 24 more.
966
  - `boxes` (39 columns): `image_sha256`, `source_id`, `source_version`, `ann_id`, `label_native`, `label_native_id`, `label_set`, `taxon_node_id`, `form_node_id`, `condition_node_id`, `taxon_rank`, `worms_aphia_id`, `rs_benthic_code`, `match_type`, and 25 more.
967
  - `semseg` (45 columns): `image_sha256`, `source_id`, `source_version`, `ann_id`, `label_native`, `label_native_id`, `label_set`, `taxon_node_id`, `form_node_id`, `condition_node_id`, `taxon_rank`, `worms_aphia_id`, `rs_benthic_code`, `match_type`, and 31 more.
 
968
  - `instances` (40 columns): `image_sha256`, `source_id`, `source_version`, `ann_id`, `label_native`, `label_native_id`, `label_set`, `taxon_node_id`, `form_node_id`, `condition_node_id`, `taxon_rank`, `worms_aphia_id`, `rs_benthic_code`, `match_type`, and 26 more.
969
  - `benthic-cover` (7 columns): `sha256`, `source_id`, `label_origin`, `benthic_cover`, `benthic_dominant`, `benthic_present`, `label_status`.
970
  - `taxonomy` (11 columns): `kind`, `key`, `name`, `parent`, `rank`, `axis`, `aphia_id`, `non_taxon`, `fidelity`, `targets`, `taxonomy_version`.
@@ -975,6 +1000,8 @@ Keys: the image key is `image_sha256` (64 lowercase hex, the staged checksum, ne
975
 
976
  **Masks.** A `semseg` row names a v1.0 mask config in `mask_config` when that frozen config holds the image's mask, and the mask stays there; otherwise the mask is embedded in the row as a palette PNG. The `instances` table carries no masks: each row holds the instance's `polygon` or `rle` (or a `mask_ref` pointer), `instance_id`, the native label with its taxonomy nodes and `match_type`, `annotator_type` and `ann_license`, and the instance masks stay in the v1.0 `instance-masks` config.
977
 
 
 
978
  ## Label space
979
 
980
  Labels are harmonised into the pinned taxonomy release (`taxonomy_version` is stamped on every row of every new table). Three axes per row: `taxon_node_id`, `form_node_id` and `condition_node_id`, with nodes keyed `<schema>:<id>`. `rs-benthic-v1` is the functional schema (L0 biotic/abiotic, L1 phyla, L2 the 14 MariMap codes, L3 genera), `rs-taxa-v1` the identity schema (`A<AphiaID>` nodes, AphiaID also shipped as `worms_aphia_id`) and `rs-fauna-v1` the fish and fauna schema. Node ids are namespaced in taxonomy 3.0.0: an `rs-taxa-v1` id is `A` followed by the WoRMS AphiaID, and the non-taxon nodes of `rs-benthic-v1` and `rs-fauna-v1` (debris, equipment, divers, wrecks, seafloor, unknown) carry `NT_*` ids. `label-map` maps each source's raw labels to these nodes, one row per source and native label or pixel value. `match_type` is exact, broader, narrower, related or unmapped; `narrower` is stored for audit and never used as a positive. A native label with no mapping is a row with `match_type = unmapped` and null node columns, never dropped, so the unmapped labels of each source are listed in `label-map` (the mapped share per source is tabulated below); the training views send them to `255` (ignore).
@@ -1158,6 +1185,7 @@ Rights holders and data subjects: open an issue at https://github.com/reefsuppor
1158
  |---|---|---|
1159
  | v1.0 | 2026-10-07 | coral-masks, scene-masks, instance-masks and fish-boxes: 8 sources, 58,803 rows. Frozen: files, rows and paths are unchanged in v1.1.0. |
1160
  | v1.1.0 | 2026-10-17 | Additive: 11 new configurations. |
 
1161
 
1162
  - **Added (additive; no v1.0 file, row, path or `configs:` entry changed):** the configs `images`, `metadata`, `points`, `bleaching`, `boxes`, `semseg`, `instances`, `benthic-cover`, `sites`, `label-map` and `sources`, and `taxonomy` in the open repo; `LICENSE`, `NOTICE`, `CITATION.cff`, `croissant.json` and `provenance/`.
1163
  - **Unchanged:** every v1.0 config, with its files, rows and paths; the release is additive.
@@ -1181,7 +1209,7 @@ load_dataset("reefsupport/marine-data", "metadata", split="train", revision="v1.
1181
  title = {marine-data},
1182
  author = {Reef Support},
1183
  year = {2026},
1184
- version = {1.1.0},
1185
  url = {https://huggingface.co/datasets/reefsupport/marine-data},
1186
  }
1187
  ```
 
123
  path: data/semseg/validation-*.parquet
124
  - split: test
125
  path: data/semseg/test-*.parquet
126
+ - config_name: condition-masks
127
+ data_files:
128
+ - split: train
129
+ path: data/condition-masks/train-*.parquet
130
  - config_name: instances
131
  data_files:
132
  - split: train
 
672
  num_examples: 559
673
  download_size: 1323438
674
  dataset_size: 1323438
675
+ - config_name: condition-masks
676
+ features:
677
+ - name: image_sha256
678
+ dtype: string
679
+ - name: source_id
680
+ dtype: string
681
+ - name: split
682
+ dtype: string
683
+ - name: class_map
684
+ dtype: string
685
+ - name: ignore_value
686
+ dtype: string
687
+ - name: attrs
688
+ dtype: string
689
+ - name: mask
690
+ dtype: image
691
+ - name: mask_bytes_sha256
692
+ dtype: string
693
+ - name: mask_config
694
+ dtype: string
695
  - config_name: instances
696
  features:
697
  - name: image_sha256
 
930
 
931
  | Field | Value |
932
  |---|---|
933
+ | Configurations | 12: `images`, `metadata`, `points`, `bleaching`, `boxes`, `semseg`, `condition-masks`, `instances`, `benthic-cover`, `taxonomy`, `label-map`, `sources` |
934
  | Images (`metadata` rows) | 65,356 |
935
  | Sources | 14 |
936
  | Format | Parquet shards, streamable; images and new masks embedded once |
937
  | Size of the new configs | 19.1 GB |
938
+ | Version | v1.1.1 (v1.1.0 plus `condition-masks`), built 2026-10-17 |
939
  | Code | [github.com/reefsupport/marine-data](https://github.com/reefsupport/marine-data) |
940
 
941
  ## Supported tasks
 
989
  - `bleaching` (38 columns): `image_sha256`, `source_id`, `source_version`, `ann_id`, `label_native`, `label_native_id`, `label_set`, `taxon_node_id`, `form_node_id`, `condition_node_id`, `taxon_rank`, `worms_aphia_id`, `rs_benthic_code`, `match_type`, and 24 more.
990
  - `boxes` (39 columns): `image_sha256`, `source_id`, `source_version`, `ann_id`, `label_native`, `label_native_id`, `label_set`, `taxon_node_id`, `form_node_id`, `condition_node_id`, `taxon_rank`, `worms_aphia_id`, `rs_benthic_code`, `match_type`, and 25 more.
991
  - `semseg` (45 columns): `image_sha256`, `source_id`, `source_version`, `ann_id`, `label_native`, `label_native_id`, `label_set`, `taxon_node_id`, `form_node_id`, `condition_node_id`, `taxon_rank`, `worms_aphia_id`, `rs_benthic_code`, `match_type`, and 31 more.
992
+ - `condition-masks` (9 columns): `image_sha256`, `source_id`, `split`, `class_map`, `ignore_value`, `attrs`, `mask`, `mask_bytes_sha256`, `mask_config`.
993
  - `instances` (40 columns): `image_sha256`, `source_id`, `source_version`, `ann_id`, `label_native`, `label_native_id`, `label_set`, `taxon_node_id`, `form_node_id`, `condition_node_id`, `taxon_rank`, `worms_aphia_id`, `rs_benthic_code`, `match_type`, and 26 more.
994
  - `benthic-cover` (7 columns): `sha256`, `source_id`, `label_origin`, `benthic_cover`, `benthic_dominant`, `benthic_present`, `label_status`.
995
  - `taxonomy` (11 columns): `kind`, `key`, `name`, `parent`, `rank`, `axis`, `aphia_id`, `non_taxon`, `fidelity`, `targets`, `taxonomy_version`.
 
1000
 
1001
  **Masks.** A `semseg` row names a v1.0 mask config in `mask_config` when that frozen config holds the image's mask, and the mask stays there; otherwise the mask is embedded in the row as a palette PNG. The `instances` table carries no masks: each row holds the instance's `polygon` or `rle` (or a `mask_ref` pointer), `instance_id`, the native label with its taxonomy nodes and `match_type`, `annotator_type` and `ann_license`, and the instance masks stay in the v1.0 `instance-masks` config.
1002
 
1003
+ **Condition masks (v1.1.1).** `condition-masks` holds the Tayrona bleaching rasters of `reef-support-bleaching` as palette PNGs, `train` only, one row per image (hidden-test images withheld). The image bytes are not repeated: `metadata.bytes_config` names the config that holds them. Pixel `255` is ignore (unlabelled in the source raster, value 0), `1` is `bleached` (condition `BLEACHED`) and `2` is `non_bleached` (condition `HEALTHY`: the source only recorded bleached or not). `class_map` keeps the source pixel values; `attrs.class_resolution` carries the condition node. The v1.1.0 `label-map` has no rows for this source; this note is the definition.
1004
+
1005
  ## Label space
1006
 
1007
  Labels are harmonised into the pinned taxonomy release (`taxonomy_version` is stamped on every row of every new table). Three axes per row: `taxon_node_id`, `form_node_id` and `condition_node_id`, with nodes keyed `<schema>:<id>`. `rs-benthic-v1` is the functional schema (L0 biotic/abiotic, L1 phyla, L2 the 14 MariMap codes, L3 genera), `rs-taxa-v1` the identity schema (`A<AphiaID>` nodes, AphiaID also shipped as `worms_aphia_id`) and `rs-fauna-v1` the fish and fauna schema. Node ids are namespaced in taxonomy 3.0.0: an `rs-taxa-v1` id is `A` followed by the WoRMS AphiaID, and the non-taxon nodes of `rs-benthic-v1` and `rs-fauna-v1` (debris, equipment, divers, wrecks, seafloor, unknown) carry `NT_*` ids. `label-map` maps each source's raw labels to these nodes, one row per source and native label or pixel value. `match_type` is exact, broader, narrower, related or unmapped; `narrower` is stored for audit and never used as a positive. A native label with no mapping is a row with `match_type = unmapped` and null node columns, never dropped, so the unmapped labels of each source are listed in `label-map` (the mapped share per source is tabulated below); the training views send them to `255` (ignore).
 
1185
  |---|---|---|
1186
  | v1.0 | 2026-10-07 | coral-masks, scene-masks, instance-masks and fish-boxes: 8 sources, 58,803 rows. Frozen: files, rows and paths are unchanged in v1.1.0. |
1187
  | v1.1.0 | 2026-10-17 | Additive: 11 new configurations. |
1188
+ | v1.1.1 | 2026-10-24 | Additive: one new configuration, `condition-masks` (635 Tayrona bleaching rasters, `train`). Every v1.1.0 file is unchanged. |
1189
 
1190
  - **Added (additive; no v1.0 file, row, path or `configs:` entry changed):** the configs `images`, `metadata`, `points`, `bleaching`, `boxes`, `semseg`, `instances`, `benthic-cover`, `sites`, `label-map` and `sources`, and `taxonomy` in the open repo; `LICENSE`, `NOTICE`, `CITATION.cff`, `croissant.json` and `provenance/`.
1191
  - **Unchanged:** every v1.0 config, with its files, rows and paths; the release is additive.
 
1209
  title = {marine-data},
1210
  author = {Reef Support},
1211
  year = {2026},
1212
+ version = {1.1.1},
1213
  url = {https://huggingface.co/datasets/reefsupport/marine-data},
1214
  }
1215
  ```