marinedata release v1.1.1 (open): card
Browse files
README.md
CHANGED
|
@@ -123,6 +123,10 @@ configs:
|
|
| 123 |
path: data/semseg/validation-*.parquet
|
| 124 |
- split: test
|
| 125 |
path: data/semseg/test-*.parquet
|
|
|
|
|
|
|
|
|
|
|
|
|
| 126 |
- config_name: instances
|
| 127 |
data_files:
|
| 128 |
- split: train
|
|
@@ -668,6 +672,26 @@ dataset_info:
|
|
| 668 |
num_examples: 559
|
| 669 |
download_size: 1323438
|
| 670 |
dataset_size: 1323438
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 671 |
- config_name: instances
|
| 672 |
features:
|
| 673 |
- name: image_sha256
|
|
@@ -906,12 +930,12 @@ Reef Support Marine Data v1.1.0 adds 11 configurations to the frozen v1.0 releas
|
|
| 906 |
|
| 907 |
| Field | Value |
|
| 908 |
|---|---|
|
| 909 |
-
| Configurations |
|
| 910 |
| Images (`metadata` rows) | 65,356 |
|
| 911 |
| Sources | 14 |
|
| 912 |
| Format | Parquet shards, streamable; images and new masks embedded once |
|
| 913 |
| Size of the new configs | 19.1 GB |
|
| 914 |
-
| Version | v1.1.0, built 2026-10-17 |
|
| 915 |
| Code | [github.com/reefsupport/marine-data](https://github.com/reefsupport/marine-data) |
|
| 916 |
|
| 917 |
## Supported tasks
|
|
@@ -965,6 +989,7 @@ duckdb.sql("""
|
|
| 965 |
- `bleaching` (38 columns): `image_sha256`, `source_id`, `source_version`, `ann_id`, `label_native`, `label_native_id`, `label_set`, `taxon_node_id`, `form_node_id`, `condition_node_id`, `taxon_rank`, `worms_aphia_id`, `rs_benthic_code`, `match_type`, and 24 more.
|
| 966 |
- `boxes` (39 columns): `image_sha256`, `source_id`, `source_version`, `ann_id`, `label_native`, `label_native_id`, `label_set`, `taxon_node_id`, `form_node_id`, `condition_node_id`, `taxon_rank`, `worms_aphia_id`, `rs_benthic_code`, `match_type`, and 25 more.
|
| 967 |
- `semseg` (45 columns): `image_sha256`, `source_id`, `source_version`, `ann_id`, `label_native`, `label_native_id`, `label_set`, `taxon_node_id`, `form_node_id`, `condition_node_id`, `taxon_rank`, `worms_aphia_id`, `rs_benthic_code`, `match_type`, and 31 more.
|
|
|
|
| 968 |
- `instances` (40 columns): `image_sha256`, `source_id`, `source_version`, `ann_id`, `label_native`, `label_native_id`, `label_set`, `taxon_node_id`, `form_node_id`, `condition_node_id`, `taxon_rank`, `worms_aphia_id`, `rs_benthic_code`, `match_type`, and 26 more.
|
| 969 |
- `benthic-cover` (7 columns): `sha256`, `source_id`, `label_origin`, `benthic_cover`, `benthic_dominant`, `benthic_present`, `label_status`.
|
| 970 |
- `taxonomy` (11 columns): `kind`, `key`, `name`, `parent`, `rank`, `axis`, `aphia_id`, `non_taxon`, `fidelity`, `targets`, `taxonomy_version`.
|
|
@@ -975,6 +1000,8 @@ Keys: the image key is `image_sha256` (64 lowercase hex, the staged checksum, ne
|
|
| 975 |
|
| 976 |
**Masks.** A `semseg` row names a v1.0 mask config in `mask_config` when that frozen config holds the image's mask, and the mask stays there; otherwise the mask is embedded in the row as a palette PNG. The `instances` table carries no masks: each row holds the instance's `polygon` or `rle` (or a `mask_ref` pointer), `instance_id`, the native label with its taxonomy nodes and `match_type`, `annotator_type` and `ann_license`, and the instance masks stay in the v1.0 `instance-masks` config.
|
| 977 |
|
|
|
|
|
|
|
| 978 |
## Label space
|
| 979 |
|
| 980 |
Labels are harmonised into the pinned taxonomy release (`taxonomy_version` is stamped on every row of every new table). Three axes per row: `taxon_node_id`, `form_node_id` and `condition_node_id`, with nodes keyed `<schema>:<id>`. `rs-benthic-v1` is the functional schema (L0 biotic/abiotic, L1 phyla, L2 the 14 MariMap codes, L3 genera), `rs-taxa-v1` the identity schema (`A<AphiaID>` nodes, AphiaID also shipped as `worms_aphia_id`) and `rs-fauna-v1` the fish and fauna schema. Node ids are namespaced in taxonomy 3.0.0: an `rs-taxa-v1` id is `A` followed by the WoRMS AphiaID, and the non-taxon nodes of `rs-benthic-v1` and `rs-fauna-v1` (debris, equipment, divers, wrecks, seafloor, unknown) carry `NT_*` ids. `label-map` maps each source's raw labels to these nodes, one row per source and native label or pixel value. `match_type` is exact, broader, narrower, related or unmapped; `narrower` is stored for audit and never used as a positive. A native label with no mapping is a row with `match_type = unmapped` and null node columns, never dropped, so the unmapped labels of each source are listed in `label-map` (the mapped share per source is tabulated below); the training views send them to `255` (ignore).
|
|
@@ -1158,6 +1185,7 @@ Rights holders and data subjects: open an issue at https://github.com/reefsuppor
|
|
| 1158 |
|---|---|---|
|
| 1159 |
| v1.0 | 2026-10-07 | coral-masks, scene-masks, instance-masks and fish-boxes: 8 sources, 58,803 rows. Frozen: files, rows and paths are unchanged in v1.1.0. |
|
| 1160 |
| v1.1.0 | 2026-10-17 | Additive: 11 new configurations. |
|
|
|
|
| 1161 |
|
| 1162 |
- **Added (additive; no v1.0 file, row, path or `configs:` entry changed):** the configs `images`, `metadata`, `points`, `bleaching`, `boxes`, `semseg`, `instances`, `benthic-cover`, `sites`, `label-map` and `sources`, and `taxonomy` in the open repo; `LICENSE`, `NOTICE`, `CITATION.cff`, `croissant.json` and `provenance/`.
|
| 1163 |
- **Unchanged:** every v1.0 config, with its files, rows and paths; the release is additive.
|
|
@@ -1181,7 +1209,7 @@ load_dataset("reefsupport/marine-data", "metadata", split="train", revision="v1.
|
|
| 1181 |
title = {marine-data},
|
| 1182 |
author = {Reef Support},
|
| 1183 |
year = {2026},
|
| 1184 |
-
version = {1.1.
|
| 1185 |
url = {https://huggingface.co/datasets/reefsupport/marine-data},
|
| 1186 |
}
|
| 1187 |
```
|
|
|
|
| 123 |
path: data/semseg/validation-*.parquet
|
| 124 |
- split: test
|
| 125 |
path: data/semseg/test-*.parquet
|
| 126 |
+
- config_name: condition-masks
|
| 127 |
+
data_files:
|
| 128 |
+
- split: train
|
| 129 |
+
path: data/condition-masks/train-*.parquet
|
| 130 |
- config_name: instances
|
| 131 |
data_files:
|
| 132 |
- split: train
|
|
|
|
| 672 |
num_examples: 559
|
| 673 |
download_size: 1323438
|
| 674 |
dataset_size: 1323438
|
| 675 |
+
- config_name: condition-masks
|
| 676 |
+
features:
|
| 677 |
+
- name: image_sha256
|
| 678 |
+
dtype: string
|
| 679 |
+
- name: source_id
|
| 680 |
+
dtype: string
|
| 681 |
+
- name: split
|
| 682 |
+
dtype: string
|
| 683 |
+
- name: class_map
|
| 684 |
+
dtype: string
|
| 685 |
+
- name: ignore_value
|
| 686 |
+
dtype: string
|
| 687 |
+
- name: attrs
|
| 688 |
+
dtype: string
|
| 689 |
+
- name: mask
|
| 690 |
+
dtype: image
|
| 691 |
+
- name: mask_bytes_sha256
|
| 692 |
+
dtype: string
|
| 693 |
+
- name: mask_config
|
| 694 |
+
dtype: string
|
| 695 |
- config_name: instances
|
| 696 |
features:
|
| 697 |
- name: image_sha256
|
|
|
|
| 930 |
|
| 931 |
| Field | Value |
|
| 932 |
|---|---|
|
| 933 |
+
| Configurations | 12: `images`, `metadata`, `points`, `bleaching`, `boxes`, `semseg`, `condition-masks`, `instances`, `benthic-cover`, `taxonomy`, `label-map`, `sources` |
|
| 934 |
| Images (`metadata` rows) | 65,356 |
|
| 935 |
| Sources | 14 |
|
| 936 |
| Format | Parquet shards, streamable; images and new masks embedded once |
|
| 937 |
| Size of the new configs | 19.1 GB |
|
| 938 |
+
| Version | v1.1.1 (v1.1.0 plus `condition-masks`), built 2026-10-17 |
|
| 939 |
| Code | [github.com/reefsupport/marine-data](https://github.com/reefsupport/marine-data) |
|
| 940 |
|
| 941 |
## Supported tasks
|
|
|
|
| 989 |
- `bleaching` (38 columns): `image_sha256`, `source_id`, `source_version`, `ann_id`, `label_native`, `label_native_id`, `label_set`, `taxon_node_id`, `form_node_id`, `condition_node_id`, `taxon_rank`, `worms_aphia_id`, `rs_benthic_code`, `match_type`, and 24 more.
|
| 990 |
- `boxes` (39 columns): `image_sha256`, `source_id`, `source_version`, `ann_id`, `label_native`, `label_native_id`, `label_set`, `taxon_node_id`, `form_node_id`, `condition_node_id`, `taxon_rank`, `worms_aphia_id`, `rs_benthic_code`, `match_type`, and 25 more.
|
| 991 |
- `semseg` (45 columns): `image_sha256`, `source_id`, `source_version`, `ann_id`, `label_native`, `label_native_id`, `label_set`, `taxon_node_id`, `form_node_id`, `condition_node_id`, `taxon_rank`, `worms_aphia_id`, `rs_benthic_code`, `match_type`, and 31 more.
|
| 992 |
+
- `condition-masks` (9 columns): `image_sha256`, `source_id`, `split`, `class_map`, `ignore_value`, `attrs`, `mask`, `mask_bytes_sha256`, `mask_config`.
|
| 993 |
- `instances` (40 columns): `image_sha256`, `source_id`, `source_version`, `ann_id`, `label_native`, `label_native_id`, `label_set`, `taxon_node_id`, `form_node_id`, `condition_node_id`, `taxon_rank`, `worms_aphia_id`, `rs_benthic_code`, `match_type`, and 26 more.
|
| 994 |
- `benthic-cover` (7 columns): `sha256`, `source_id`, `label_origin`, `benthic_cover`, `benthic_dominant`, `benthic_present`, `label_status`.
|
| 995 |
- `taxonomy` (11 columns): `kind`, `key`, `name`, `parent`, `rank`, `axis`, `aphia_id`, `non_taxon`, `fidelity`, `targets`, `taxonomy_version`.
|
|
|
|
| 1000 |
|
| 1001 |
**Masks.** A `semseg` row names a v1.0 mask config in `mask_config` when that frozen config holds the image's mask, and the mask stays there; otherwise the mask is embedded in the row as a palette PNG. The `instances` table carries no masks: each row holds the instance's `polygon` or `rle` (or a `mask_ref` pointer), `instance_id`, the native label with its taxonomy nodes and `match_type`, `annotator_type` and `ann_license`, and the instance masks stay in the v1.0 `instance-masks` config.
|
| 1002 |
|
| 1003 |
+
**Condition masks (v1.1.1).** `condition-masks` holds the Tayrona bleaching rasters of `reef-support-bleaching` as palette PNGs, `train` only, one row per image (hidden-test images withheld). The image bytes are not repeated: `metadata.bytes_config` names the config that holds them. Pixel `255` is ignore (unlabelled in the source raster, value 0), `1` is `bleached` (condition `BLEACHED`) and `2` is `non_bleached` (condition `HEALTHY`: the source only recorded bleached or not). `class_map` keeps the source pixel values; `attrs.class_resolution` carries the condition node. The v1.1.0 `label-map` has no rows for this source; this note is the definition.
|
| 1004 |
+
|
| 1005 |
## Label space
|
| 1006 |
|
| 1007 |
Labels are harmonised into the pinned taxonomy release (`taxonomy_version` is stamped on every row of every new table). Three axes per row: `taxon_node_id`, `form_node_id` and `condition_node_id`, with nodes keyed `<schema>:<id>`. `rs-benthic-v1` is the functional schema (L0 biotic/abiotic, L1 phyla, L2 the 14 MariMap codes, L3 genera), `rs-taxa-v1` the identity schema (`A<AphiaID>` nodes, AphiaID also shipped as `worms_aphia_id`) and `rs-fauna-v1` the fish and fauna schema. Node ids are namespaced in taxonomy 3.0.0: an `rs-taxa-v1` id is `A` followed by the WoRMS AphiaID, and the non-taxon nodes of `rs-benthic-v1` and `rs-fauna-v1` (debris, equipment, divers, wrecks, seafloor, unknown) carry `NT_*` ids. `label-map` maps each source's raw labels to these nodes, one row per source and native label or pixel value. `match_type` is exact, broader, narrower, related or unmapped; `narrower` is stored for audit and never used as a positive. A native label with no mapping is a row with `match_type = unmapped` and null node columns, never dropped, so the unmapped labels of each source are listed in `label-map` (the mapped share per source is tabulated below); the training views send them to `255` (ignore).
|
|
|
|
| 1185 |
|---|---|---|
|
| 1186 |
| v1.0 | 2026-10-07 | coral-masks, scene-masks, instance-masks and fish-boxes: 8 sources, 58,803 rows. Frozen: files, rows and paths are unchanged in v1.1.0. |
|
| 1187 |
| v1.1.0 | 2026-10-17 | Additive: 11 new configurations. |
|
| 1188 |
+
| v1.1.1 | 2026-10-24 | Additive: one new configuration, `condition-masks` (635 Tayrona bleaching rasters, `train`). Every v1.1.0 file is unchanged. |
|
| 1189 |
|
| 1190 |
- **Added (additive; no v1.0 file, row, path or `configs:` entry changed):** the configs `images`, `metadata`, `points`, `bleaching`, `boxes`, `semseg`, `instances`, `benthic-cover`, `sites`, `label-map` and `sources`, and `taxonomy` in the open repo; `LICENSE`, `NOTICE`, `CITATION.cff`, `croissant.json` and `provenance/`.
|
| 1191 |
- **Unchanged:** every v1.0 config, with its files, rows and paths; the release is additive.
|
|
|
|
| 1209 |
title = {marine-data},
|
| 1210 |
author = {Reef Support},
|
| 1211 |
year = {2026},
|
| 1212 |
+
version = {1.1.1},
|
| 1213 |
url = {https://huggingface.co/datasets/reefsupport/marine-data},
|
| 1214 |
}
|
| 1215 |
```
|