Sync runs/hostkey-2026-10-22-epyc9354 (2026-10-22 10:05 BDT)
Browse files- runs/hostkey-2026-10-22-epyc9354/out/queue.log +12 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs.csv +6 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R4.extended/DONE +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R4.extended/out.tre +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R4.extended/stats.json +151 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R4.extended/time +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.default/DONE +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.default/args +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.default/log +0 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.default/out.tre +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.default/stats.json +151 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.default/time +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.extended/DONE +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.extended/args +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.extended/log +0 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.extended/out.tre +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.extended/stats.json +151 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.extended/time +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.default/DONE +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.default/args +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.default/log +0 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.default/out.tre +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.default/stats.json +151 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.default/time +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.extended/DONE +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.extended/args +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.extended/log +0 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.extended/out.tre +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.extended/stats.json +151 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.extended/time +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.default/DONE +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.default/args +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.default/log +0 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.default/out.tre +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.default/stats.json +151 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.default/time +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.extended/args +1 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.extended/log +0 -0
- runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.extended/time +0 -0
runs/hostkey-2026-10-22-epyc9354/out/queue.log
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2026-10-22T03:31:50Z start 147/170 grid.genes.t1000g50000.R4.default timeout=1800
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2026-10-22T03:33:27Z end grid.genes.t1000g50000.R4.default done rc=0 time=96.96,10064624
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2026-10-22T03:31:50Z start 147/170 grid.genes.t1000g50000.R4.default timeout=1800
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2026-10-22T03:33:27Z start 148/170 grid.genes.t1000g50000.R4.extended timeout=1800
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2026-10-22T03:39:09Z end grid.genes.t1000g50000.R4.extended done rc=0 time=342.06,10062476
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2026-10-22T03:39:09Z start 149/170 grid.genes.t1000g50000.R5.default timeout=1800
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2026-10-22T03:40:41Z start 150/170 grid.genes.t1000g50000.R5.extended timeout=1800
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2026-10-22T03:46:26Z start 151/170 grid.genes.t1000g75000.R1.default timeout=1800
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2026-10-22T03:48:51Z end grid.genes.t1000g75000.R1.default done rc=0 time=145.07,15089244
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2026-10-22T03:48:51Z start 152/170 grid.genes.t1000g75000.R1.extended timeout=1800
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2026-10-22T03:57:06Z start 153/170 grid.genes.t1000g75000.R2.default timeout=1800
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2026-10-22T03:59:33Z start 154/170 grid.genes.t1000g75000.R2.extended timeout=1800
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runs/hostkey-2026-10-22-epyc9354/out/runs.csv
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@@ -146,3 +146,9 @@ grid.genes.t1000g50000.R2.extended,t1000g50000.R2,done,0,356.80,10026912,2cc40ef
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runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R4.extended/DONE
ADDED
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done
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runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R4.extended/out.tre
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runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R4.extended/stats.json
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|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"genes": 50000,
|
| 3 |
+
"taxa": 1000,
|
| 4 |
+
"workers": 64,
|
| 5 |
+
"progress": "off",
|
| 6 |
+
"divide": true,
|
| 7 |
+
"divide_score": "quartet",
|
| 8 |
+
"bipartition_test": true,
|
| 9 |
+
"bipartition_test_available": true,
|
| 10 |
+
"bipartition_test_complete_genes": true,
|
| 11 |
+
"bipartition_test_coefficient": 0.05,
|
| 12 |
+
"bipartition_test_crossover": 10000,
|
| 13 |
+
"bipartition_test_proposals": 1,
|
| 14 |
+
"bipartition_test_anchor_pairs": 1,
|
| 15 |
+
"bipartition_test_threshold": 0.113681,
|
| 16 |
+
"regraft_score": "raw",
|
| 17 |
+
"nni": true,
|
| 18 |
+
"nni_move_cap": false,
|
| 19 |
+
"nni_support_gate": false,
|
| 20 |
+
"nni_batch": true,
|
| 21 |
+
"spr_refine": true,
|
| 22 |
+
"spr_reads_per_pass": 128,
|
| 23 |
+
"spr_min_clade": 10,
|
| 24 |
+
"spr_candidates": 150,
|
| 25 |
+
"spr_max_rounds": 2,
|
| 26 |
+
"subproblems": 422,
|
| 27 |
+
"completed_subproblems": 422,
|
| 28 |
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"max_depth": 9,
|
| 29 |
+
"max_active_taxa": 1000,
|
| 30 |
+
"taxon_registry_ns": 325602584,
|
| 31 |
+
"taxon_registry_physical_labels": 50000000,
|
| 32 |
+
"taxon_registry_unique_labels": 1000,
|
| 33 |
+
"taxon_registry_sort_items": 1000,
|
| 34 |
+
"gene_index_ns": 597745068,
|
| 35 |
+
"startup_ns": 22025195378,
|
| 36 |
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|
| 37 |
+
"mre_accepted_splits": 997,
|
| 38 |
+
"mre_count_ns": 3844486377,
|
| 39 |
+
"mre_assembly_ns": 16804369914,
|
| 40 |
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"starting_tree_index_builds": 1,
|
| 41 |
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"starting_tree_index_nodes": 1998,
|
| 42 |
+
"candidate_sets": 422,
|
| 43 |
+
"candidates": 7595,
|
| 44 |
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"bipartitions_scored": 7595,
|
| 45 |
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"bipartition_score_ns": 24377573618,
|
| 46 |
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"bipartition_test_index_ns": 92535884,
|
| 47 |
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"bipartition_test_ns": 978980409,
|
| 48 |
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"bipartition_tests": 422,
|
| 49 |
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"bipartition_test_accepts": 420,
|
| 50 |
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"bipartition_test_rejects": 2,
|
| 51 |
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"bipartition_test_negative_accepts": 0,
|
| 52 |
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"bipartition_test_max_negative_gap_twice_k": 0,
|
| 53 |
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"bipartition_test_singletons": 2,
|
| 54 |
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"bipartition_test_distance_queries": 886100000,
|
| 55 |
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|
| 56 |
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"bipartition_test_uncovered_pairs": 0,
|
| 57 |
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"bipartition_test_untestable": 0,
|
| 58 |
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"bipartition_test_shared_genes": 0,
|
| 59 |
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"regraft_calls": 844,
|
| 60 |
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"regraft_vertices": 7175,
|
| 61 |
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"regraft_edge_ties": 0,
|
| 62 |
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"regraft_ns": 30925952720,
|
| 63 |
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"nni_edges_scored": 1994,
|
| 64 |
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"nni_full_score_passes": 1,
|
| 65 |
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"nni_local_score_passes": 0,
|
| 66 |
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"nni_local_edges_scored": 0,
|
| 67 |
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"nni_moves_accepted": 0,
|
| 68 |
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"nni_batch_passes": 0,
|
| 69 |
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"nni_support_stops": 0,
|
| 70 |
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"nni_split_support_ns": 0,
|
| 71 |
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"nni_ns": 4503686720,
|
| 72 |
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"spr_rounds": 1,
|
| 73 |
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"spr_reads": 122,
|
| 74 |
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"spr_candidates_scored": 0,
|
| 75 |
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"spr_moves": 0,
|
| 76 |
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"spr_pass_ns": 248658447798,
|
| 77 |
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"spr_ns": 248658496090,
|
| 78 |
+
"active_taxa_entries": 160504,
|
| 79 |
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"active_taxa_index_entries": 160504,
|
| 80 |
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"query_tree_selected_leaves": 8861,
|
| 81 |
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"query_tree_lca_queries": 8439,
|
| 82 |
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"query_tree_retained_nodes": 17290,
|
| 83 |
+
"gene_set_scoring_calls": 742,
|
| 84 |
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"gene_set_scoring_nodes": 1657200000,
|
| 85 |
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"hdt_builds": 37150000,
|
| 86 |
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"hdt_build_ns": 19107878617,
|
| 87 |
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"hdt_queries": 788350000,
|
| 88 |
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"hdt_recolor_ops": 5445500709,
|
| 89 |
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"hdt_nodes_recomputed": 14693303826,
|
| 90 |
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"extract_scratch_peak_bytes": 95896,
|
| 91 |
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"contract_scratch_peak_bytes": 193043,
|
| 92 |
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"state_arena_peak_bytes": 6838812,
|
| 93 |
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"worker_total_peak_bytes": 6936717,
|
| 94 |
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"max_scoring_source_taxa": 1000,
|
| 95 |
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"scoring_source_inflation_violations": 0,
|
| 96 |
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"child_gene_set_reuses": 423,
|
| 97 |
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|
| 98 |
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"child_gene_set_accepts": 421,
|
| 99 |
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"child_gene_set_heavy_reuses": 0,
|
| 100 |
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"child_gene_set_pair_violations": 0,
|
| 101 |
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"child_gene_set_input_nodes": 1520200000,
|
| 102 |
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"child_gene_set_output_nodes": 744000000,
|
| 103 |
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"child_gene_set_max_accepted_ratio_ppm": 687500,
|
| 104 |
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"child_gene_set_ns": 2399327443,
|
| 105 |
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"live_child_gene_sets": 0,
|
| 106 |
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"max_child_gene_sets": 9,
|
| 107 |
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"live_child_gene_set_slots": 0,
|
| 108 |
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"max_child_gene_set_slots": 1324,
|
| 109 |
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"max_child_gene_set_bytes": 1335800000,
|
| 110 |
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"serial_children": 422,
|
| 111 |
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"parallel_children": 0,
|
| 112 |
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"parallel_child_budget_rejections": 0,
|
| 113 |
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"parallel_child_size_rejections": 0,
|
| 114 |
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"max_parallel_child_slots": 0,
|
| 115 |
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"recursion_calls": 845,
|
| 116 |
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"recursion_nonbase_calls": 422,
|
| 117 |
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"recursion_max_depth": 10,
|
| 118 |
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"recursion_taxon_mass": 9861,
|
| 119 |
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"recursion_split_tests": 8861,
|
| 120 |
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"recursion_partition_moves": 8861,
|
| 121 |
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"recursion_balanced_splits": 162,
|
| 122 |
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"recursion_skewed_splits": 2,
|
| 123 |
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"recursion_tree_node_visits": 16036,
|
| 124 |
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"recursion_radix_entries": 70872,
|
| 125 |
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"recursion_radix_bucket_ops": 862208,
|
| 126 |
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"recursion_unique_taxa": 8861,
|
| 127 |
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"recursion_root_gene_set_nodes": 99900000,
|
| 128 |
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"recursion_root_gene_set_entries": 549500000,
|
| 129 |
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"live_payload": 0,
|
| 130 |
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"peak_payload": 1438407116,
|
| 131 |
+
"live_taxa": 0,
|
| 132 |
+
"peak_taxa": 1000,
|
| 133 |
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"live_continuation_taxa": 0,
|
| 134 |
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"peak_continuation_taxa": 998,
|
| 135 |
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"live_gene_set_nodes": 0,
|
| 136 |
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"peak_gene_set_nodes": 231400000,
|
| 137 |
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"live_gene_set_entries": 0,
|
| 138 |
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"peak_gene_set_entries": 1207000000,
|
| 139 |
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"live_gene_set_taxa": 0,
|
| 140 |
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"peak_gene_set_taxa": 1324,
|
| 141 |
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"live_tree_nodes": 0,
|
| 142 |
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"peak_tree_nodes": 3104,
|
| 143 |
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"live_tree_adjacencies": 0,
|
| 144 |
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"peak_tree_adjacencies": 6204,
|
| 145 |
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"live_taxon_scratch": 0,
|
| 146 |
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"peak_taxon_scratch": 1554,
|
| 147 |
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"accounting_violations": 0,
|
| 148 |
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"nni_gain": 0,
|
| 149 |
+
"spr_gain": 0,
|
| 150 |
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"complexity_contract_satisfied": true
|
| 151 |
+
}
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R4.extended/time
CHANGED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
342.06,10062476
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.default/DONE
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
done
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.default/args
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
-i data/sweep/t_1000_g_50000_sb_0.000001_spmin_100000_spmax_200000/R5/all_gt.tre
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.default/log
ADDED
|
File without changes
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.default/out.tre
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
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|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.default/stats.json
ADDED
|
@@ -0,0 +1,151 @@
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"genes": 50000,
|
| 3 |
+
"taxa": 1000,
|
| 4 |
+
"workers": 64,
|
| 5 |
+
"progress": "off",
|
| 6 |
+
"divide": true,
|
| 7 |
+
"divide_score": "quartet",
|
| 8 |
+
"bipartition_test": true,
|
| 9 |
+
"bipartition_test_available": true,
|
| 10 |
+
"bipartition_test_complete_genes": true,
|
| 11 |
+
"bipartition_test_coefficient": 0.05,
|
| 12 |
+
"bipartition_test_crossover": 10000,
|
| 13 |
+
"bipartition_test_proposals": 1,
|
| 14 |
+
"bipartition_test_anchor_pairs": 1,
|
| 15 |
+
"bipartition_test_threshold": 0.113681,
|
| 16 |
+
"regraft_score": "raw",
|
| 17 |
+
"nni": true,
|
| 18 |
+
"nni_move_cap": true,
|
| 19 |
+
"nni_support_gate": true,
|
| 20 |
+
"nni_batch": false,
|
| 21 |
+
"spr_refine": false,
|
| 22 |
+
"spr_reads_per_pass": 128,
|
| 23 |
+
"spr_min_clade": 10,
|
| 24 |
+
"spr_candidates": 150,
|
| 25 |
+
"spr_max_rounds": 2,
|
| 26 |
+
"subproblems": 425,
|
| 27 |
+
"completed_subproblems": 425,
|
| 28 |
+
"max_depth": 10,
|
| 29 |
+
"max_active_taxa": 1000,
|
| 30 |
+
"taxon_registry_ns": 319892167,
|
| 31 |
+
"taxon_registry_physical_labels": 50000000,
|
| 32 |
+
"taxon_registry_unique_labels": 1000,
|
| 33 |
+
"taxon_registry_sort_items": 1000,
|
| 34 |
+
"gene_index_ns": 619243292,
|
| 35 |
+
"startup_ns": 16549882787,
|
| 36 |
+
"mre_distinct_splits": 36274,
|
| 37 |
+
"mre_accepted_splits": 997,
|
| 38 |
+
"mre_count_ns": 3726333209,
|
| 39 |
+
"mre_assembly_ns": 11450438481,
|
| 40 |
+
"starting_tree_index_builds": 1,
|
| 41 |
+
"starting_tree_index_nodes": 1998,
|
| 42 |
+
"candidate_sets": 425,
|
| 43 |
+
"candidates": 7586,
|
| 44 |
+
"bipartitions_scored": 7586,
|
| 45 |
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"bipartition_score_ns": 24365258902,
|
| 46 |
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"bipartition_test_index_ns": 77361570,
|
| 47 |
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"bipartition_test_ns": 977360307,
|
| 48 |
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"bipartition_tests": 425,
|
| 49 |
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"bipartition_test_accepts": 419,
|
| 50 |
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"bipartition_test_rejects": 6,
|
| 51 |
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"bipartition_test_negative_accepts": 0,
|
| 52 |
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"bipartition_test_max_negative_gap_twice_k": 1852,
|
| 53 |
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"bipartition_test_singletons": 6,
|
| 54 |
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"bipartition_test_distance_queries": 886100000,
|
| 55 |
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"bipartition_test_incomplete": 0,
|
| 56 |
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"bipartition_test_uncovered_pairs": 0,
|
| 57 |
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"bipartition_test_untestable": 0,
|
| 58 |
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"bipartition_test_shared_genes": 0,
|
| 59 |
+
"regraft_calls": 850,
|
| 60 |
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"regraft_vertices": 7167,
|
| 61 |
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"regraft_edge_ties": 0,
|
| 62 |
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"regraft_ns": 31178931733,
|
| 63 |
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"nni_edges_scored": 1994,
|
| 64 |
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"nni_full_score_passes": 1,
|
| 65 |
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"nni_local_score_passes": 0,
|
| 66 |
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"nni_local_edges_scored": 0,
|
| 67 |
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"nni_moves_accepted": 0,
|
| 68 |
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"nni_batch_passes": 0,
|
| 69 |
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"nni_support_stops": 0,
|
| 70 |
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"nni_split_support_ns": 3744443571,
|
| 71 |
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"nni_ns": 8128627362,
|
| 72 |
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"spr_rounds": 0,
|
| 73 |
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"spr_reads": 0,
|
| 74 |
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"spr_candidates_scored": 0,
|
| 75 |
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"spr_moves": 0,
|
| 76 |
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"spr_pass_ns": 0,
|
| 77 |
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"spr_ns": 0,
|
| 78 |
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"active_taxa_entries": 35518,
|
| 79 |
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"active_taxa_index_entries": 35518,
|
| 80 |
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"query_tree_selected_leaves": 8861,
|
| 81 |
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"query_tree_lca_queries": 8436,
|
| 82 |
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"query_tree_retained_nodes": 17289,
|
| 83 |
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"gene_set_scoring_calls": 753,
|
| 84 |
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"gene_set_scoring_nodes": 1658100000,
|
| 85 |
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"hdt_builds": 37700000,
|
| 86 |
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"hdt_build_ns": 19011679154,
|
| 87 |
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"hdt_queries": 787500000,
|
| 88 |
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"hdt_recolor_ops": 5574694274,
|
| 89 |
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"hdt_nodes_recomputed": 14939085938,
|
| 90 |
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"extract_scratch_peak_bytes": 95896,
|
| 91 |
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"contract_scratch_peak_bytes": 209603,
|
| 92 |
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"state_arena_peak_bytes": 6731676,
|
| 93 |
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"worker_total_peak_bytes": 6830363,
|
| 94 |
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"max_scoring_source_taxa": 1000,
|
| 95 |
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"scoring_source_inflation_violations": 0,
|
| 96 |
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"child_gene_set_reuses": 426,
|
| 97 |
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"child_gene_set_attempts": 424,
|
| 98 |
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"child_gene_set_accepts": 424,
|
| 99 |
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"child_gene_set_heavy_reuses": 0,
|
| 100 |
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"child_gene_set_pair_violations": 0,
|
| 101 |
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"child_gene_set_input_nodes": 1519000000,
|
| 102 |
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"child_gene_set_output_nodes": 743700000,
|
| 103 |
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"child_gene_set_max_accepted_ratio_ppm": 750000,
|
| 104 |
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"child_gene_set_ns": 2392051060,
|
| 105 |
+
"live_child_gene_sets": 0,
|
| 106 |
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"max_child_gene_sets": 10,
|
| 107 |
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"live_child_gene_set_slots": 0,
|
| 108 |
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"max_child_gene_set_slots": 1381,
|
| 109 |
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"max_child_gene_set_bytes": 1499000000,
|
| 110 |
+
"serial_children": 425,
|
| 111 |
+
"parallel_children": 0,
|
| 112 |
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"parallel_child_budget_rejections": 0,
|
| 113 |
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"parallel_child_size_rejections": 0,
|
| 114 |
+
"max_parallel_child_slots": 0,
|
| 115 |
+
"recursion_calls": 851,
|
| 116 |
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"recursion_nonbase_calls": 425,
|
| 117 |
+
"recursion_max_depth": 11,
|
| 118 |
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"recursion_taxon_mass": 9861,
|
| 119 |
+
"recursion_split_tests": 8861,
|
| 120 |
+
"recursion_partition_moves": 8861,
|
| 121 |
+
"recursion_balanced_splits": 158,
|
| 122 |
+
"recursion_skewed_splits": 6,
|
| 123 |
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"recursion_tree_node_visits": 16028,
|
| 124 |
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"recursion_radix_entries": 70840,
|
| 125 |
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"recursion_radix_bucket_ops": 864256,
|
| 126 |
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"recursion_unique_taxa": 8861,
|
| 127 |
+
"recursion_root_gene_set_nodes": 99900000,
|
| 128 |
+
"recursion_root_gene_set_entries": 549500000,
|
| 129 |
+
"live_payload": 0,
|
| 130 |
+
"peak_payload": 1472004702,
|
| 131 |
+
"live_taxa": 0,
|
| 132 |
+
"peak_taxa": 1000,
|
| 133 |
+
"live_continuation_taxa": 0,
|
| 134 |
+
"peak_continuation_taxa": 998,
|
| 135 |
+
"live_gene_set_nodes": 0,
|
| 136 |
+
"peak_gene_set_nodes": 237000000,
|
| 137 |
+
"live_gene_set_entries": 0,
|
| 138 |
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"peak_gene_set_entries": 1235000000,
|
| 139 |
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"live_gene_set_taxa": 0,
|
| 140 |
+
"peak_gene_set_taxa": 1381,
|
| 141 |
+
"live_tree_nodes": 0,
|
| 142 |
+
"peak_tree_nodes": 3240,
|
| 143 |
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"live_tree_adjacencies": 0,
|
| 144 |
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"peak_tree_adjacencies": 6476,
|
| 145 |
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"live_taxon_scratch": 0,
|
| 146 |
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"peak_taxon_scratch": 1622,
|
| 147 |
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"accounting_violations": 0,
|
| 148 |
+
"nni_gain": 0,
|
| 149 |
+
"spr_gain": 0,
|
| 150 |
+
"complexity_contract_satisfied": true
|
| 151 |
+
}
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.default/time
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
91.75,10062308
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.extended/DONE
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
done
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.extended/args
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
-i data/sweep/t_1000_g_50000_sb_0.000001_spmin_100000_spmax_200000/R5/all_gt.tre --extended
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.extended/log
ADDED
|
File without changes
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.extended/out.tre
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
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|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.extended/stats.json
ADDED
|
@@ -0,0 +1,151 @@
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|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"genes": 50000,
|
| 3 |
+
"taxa": 1000,
|
| 4 |
+
"workers": 64,
|
| 5 |
+
"progress": "off",
|
| 6 |
+
"divide": true,
|
| 7 |
+
"divide_score": "quartet",
|
| 8 |
+
"bipartition_test": true,
|
| 9 |
+
"bipartition_test_available": true,
|
| 10 |
+
"bipartition_test_complete_genes": true,
|
| 11 |
+
"bipartition_test_coefficient": 0.05,
|
| 12 |
+
"bipartition_test_crossover": 10000,
|
| 13 |
+
"bipartition_test_proposals": 1,
|
| 14 |
+
"bipartition_test_anchor_pairs": 1,
|
| 15 |
+
"bipartition_test_threshold": 0.113681,
|
| 16 |
+
"regraft_score": "raw",
|
| 17 |
+
"nni": true,
|
| 18 |
+
"nni_move_cap": false,
|
| 19 |
+
"nni_support_gate": false,
|
| 20 |
+
"nni_batch": true,
|
| 21 |
+
"spr_refine": true,
|
| 22 |
+
"spr_reads_per_pass": 128,
|
| 23 |
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"spr_min_clade": 10,
|
| 24 |
+
"spr_candidates": 150,
|
| 25 |
+
"spr_max_rounds": 2,
|
| 26 |
+
"subproblems": 425,
|
| 27 |
+
"completed_subproblems": 425,
|
| 28 |
+
"max_depth": 10,
|
| 29 |
+
"max_active_taxa": 1000,
|
| 30 |
+
"taxon_registry_ns": 318459851,
|
| 31 |
+
"taxon_registry_physical_labels": 50000000,
|
| 32 |
+
"taxon_registry_unique_labels": 1000,
|
| 33 |
+
"taxon_registry_sort_items": 1000,
|
| 34 |
+
"gene_index_ns": 547344435,
|
| 35 |
+
"startup_ns": 17216233769,
|
| 36 |
+
"mre_distinct_splits": 36274,
|
| 37 |
+
"mre_accepted_splits": 997,
|
| 38 |
+
"mre_count_ns": 3802619751,
|
| 39 |
+
"mre_assembly_ns": 12109553979,
|
| 40 |
+
"starting_tree_index_builds": 1,
|
| 41 |
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"starting_tree_index_nodes": 1998,
|
| 42 |
+
"candidate_sets": 425,
|
| 43 |
+
"candidates": 7586,
|
| 44 |
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"bipartitions_scored": 7586,
|
| 45 |
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"bipartition_score_ns": 24453640001,
|
| 46 |
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"bipartition_test_index_ns": 75791097,
|
| 47 |
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"bipartition_test_ns": 994262644,
|
| 48 |
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"bipartition_tests": 425,
|
| 49 |
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"bipartition_test_accepts": 419,
|
| 50 |
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"bipartition_test_rejects": 6,
|
| 51 |
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"bipartition_test_negative_accepts": 0,
|
| 52 |
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"bipartition_test_max_negative_gap_twice_k": 1852,
|
| 53 |
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"bipartition_test_singletons": 6,
|
| 54 |
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"bipartition_test_distance_queries": 886100000,
|
| 55 |
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"bipartition_test_incomplete": 0,
|
| 56 |
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"bipartition_test_uncovered_pairs": 0,
|
| 57 |
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"bipartition_test_untestable": 0,
|
| 58 |
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"bipartition_test_shared_genes": 0,
|
| 59 |
+
"regraft_calls": 850,
|
| 60 |
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"regraft_vertices": 7167,
|
| 61 |
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"regraft_edge_ties": 0,
|
| 62 |
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"regraft_ns": 31439104789,
|
| 63 |
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"nni_edges_scored": 1994,
|
| 64 |
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"nni_full_score_passes": 1,
|
| 65 |
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"nni_local_score_passes": 0,
|
| 66 |
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"nni_local_edges_scored": 0,
|
| 67 |
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"nni_moves_accepted": 0,
|
| 68 |
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"nni_batch_passes": 0,
|
| 69 |
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"nni_support_stops": 0,
|
| 70 |
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"nni_split_support_ns": 0,
|
| 71 |
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"nni_ns": 4419789541,
|
| 72 |
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"spr_rounds": 1,
|
| 73 |
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"spr_reads": 127,
|
| 74 |
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"spr_candidates_scored": 0,
|
| 75 |
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"spr_moves": 0,
|
| 76 |
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"spr_pass_ns": 255592233491,
|
| 77 |
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"spr_ns": 255592273902,
|
| 78 |
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"active_taxa_entries": 165518,
|
| 79 |
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"active_taxa_index_entries": 165518,
|
| 80 |
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"query_tree_selected_leaves": 8861,
|
| 81 |
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"query_tree_lca_queries": 8436,
|
| 82 |
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"query_tree_retained_nodes": 17289,
|
| 83 |
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"gene_set_scoring_calls": 753,
|
| 84 |
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"gene_set_scoring_nodes": 1658100000,
|
| 85 |
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"hdt_builds": 37700000,
|
| 86 |
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"hdt_build_ns": 19078698006,
|
| 87 |
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"hdt_queries": 787500000,
|
| 88 |
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"hdt_recolor_ops": 5574694274,
|
| 89 |
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"hdt_nodes_recomputed": 14939085938,
|
| 90 |
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"extract_scratch_peak_bytes": 95896,
|
| 91 |
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"contract_scratch_peak_bytes": 209603,
|
| 92 |
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"state_arena_peak_bytes": 6731676,
|
| 93 |
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"worker_total_peak_bytes": 6830363,
|
| 94 |
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"max_scoring_source_taxa": 1000,
|
| 95 |
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"scoring_source_inflation_violations": 0,
|
| 96 |
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"child_gene_set_reuses": 426,
|
| 97 |
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"child_gene_set_attempts": 424,
|
| 98 |
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"child_gene_set_accepts": 424,
|
| 99 |
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"child_gene_set_heavy_reuses": 0,
|
| 100 |
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"child_gene_set_pair_violations": 0,
|
| 101 |
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"child_gene_set_input_nodes": 1519000000,
|
| 102 |
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"child_gene_set_output_nodes": 743700000,
|
| 103 |
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"child_gene_set_max_accepted_ratio_ppm": 750000,
|
| 104 |
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"child_gene_set_ns": 2397070686,
|
| 105 |
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"live_child_gene_sets": 0,
|
| 106 |
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"max_child_gene_sets": 10,
|
| 107 |
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"live_child_gene_set_slots": 0,
|
| 108 |
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"max_child_gene_set_slots": 1381,
|
| 109 |
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"max_child_gene_set_bytes": 1499000000,
|
| 110 |
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"serial_children": 425,
|
| 111 |
+
"parallel_children": 0,
|
| 112 |
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"parallel_child_budget_rejections": 0,
|
| 113 |
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"parallel_child_size_rejections": 0,
|
| 114 |
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"max_parallel_child_slots": 0,
|
| 115 |
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"recursion_calls": 851,
|
| 116 |
+
"recursion_nonbase_calls": 425,
|
| 117 |
+
"recursion_max_depth": 11,
|
| 118 |
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"recursion_taxon_mass": 9861,
|
| 119 |
+
"recursion_split_tests": 8861,
|
| 120 |
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"recursion_partition_moves": 8861,
|
| 121 |
+
"recursion_balanced_splits": 158,
|
| 122 |
+
"recursion_skewed_splits": 6,
|
| 123 |
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"recursion_tree_node_visits": 16028,
|
| 124 |
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"recursion_radix_entries": 70840,
|
| 125 |
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"recursion_radix_bucket_ops": 864256,
|
| 126 |
+
"recursion_unique_taxa": 8861,
|
| 127 |
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"recursion_root_gene_set_nodes": 99900000,
|
| 128 |
+
"recursion_root_gene_set_entries": 549500000,
|
| 129 |
+
"live_payload": 0,
|
| 130 |
+
"peak_payload": 1472004702,
|
| 131 |
+
"live_taxa": 0,
|
| 132 |
+
"peak_taxa": 1000,
|
| 133 |
+
"live_continuation_taxa": 0,
|
| 134 |
+
"peak_continuation_taxa": 998,
|
| 135 |
+
"live_gene_set_nodes": 0,
|
| 136 |
+
"peak_gene_set_nodes": 237000000,
|
| 137 |
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"live_gene_set_entries": 0,
|
| 138 |
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"peak_gene_set_entries": 1235000000,
|
| 139 |
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"live_gene_set_taxa": 0,
|
| 140 |
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"peak_gene_set_taxa": 1381,
|
| 141 |
+
"live_tree_nodes": 0,
|
| 142 |
+
"peak_tree_nodes": 3240,
|
| 143 |
+
"live_tree_adjacencies": 0,
|
| 144 |
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"peak_tree_adjacencies": 6476,
|
| 145 |
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"live_taxon_scratch": 0,
|
| 146 |
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"peak_taxon_scratch": 1622,
|
| 147 |
+
"accounting_violations": 0,
|
| 148 |
+
"nni_gain": 0,
|
| 149 |
+
"spr_gain": 0,
|
| 150 |
+
"complexity_contract_satisfied": true
|
| 151 |
+
}
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g50000.R5.extended/time
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
344.91,10063924
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.default/DONE
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
done
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.default/args
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
-i data/sweep/t_1000_g_75000_sb_0.000001_spmin_100000_spmax_200000/R1/all_gt.tre
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.default/log
ADDED
|
File without changes
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.default/out.tre
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
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|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.default/stats.json
ADDED
|
@@ -0,0 +1,151 @@
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|
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|
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|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"genes": 75000,
|
| 3 |
+
"taxa": 1000,
|
| 4 |
+
"workers": 64,
|
| 5 |
+
"progress": "off",
|
| 6 |
+
"divide": true,
|
| 7 |
+
"divide_score": "quartet",
|
| 8 |
+
"bipartition_test": true,
|
| 9 |
+
"bipartition_test_available": true,
|
| 10 |
+
"bipartition_test_complete_genes": true,
|
| 11 |
+
"bipartition_test_coefficient": 0.05,
|
| 12 |
+
"bipartition_test_crossover": 10000,
|
| 13 |
+
"bipartition_test_proposals": 1,
|
| 14 |
+
"bipartition_test_anchor_pairs": 1,
|
| 15 |
+
"bipartition_test_threshold": 0.115095,
|
| 16 |
+
"regraft_score": "raw",
|
| 17 |
+
"nni": true,
|
| 18 |
+
"nni_move_cap": true,
|
| 19 |
+
"nni_support_gate": true,
|
| 20 |
+
"nni_batch": false,
|
| 21 |
+
"spr_refine": false,
|
| 22 |
+
"spr_reads_per_pass": 128,
|
| 23 |
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"spr_min_clade": 10,
|
| 24 |
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"spr_candidates": 150,
|
| 25 |
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"spr_max_rounds": 2,
|
| 26 |
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"subproblems": 423,
|
| 27 |
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"completed_subproblems": 423,
|
| 28 |
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"max_depth": 9,
|
| 29 |
+
"max_active_taxa": 1000,
|
| 30 |
+
"taxon_registry_ns": 484190302,
|
| 31 |
+
"taxon_registry_physical_labels": 75000000,
|
| 32 |
+
"taxon_registry_unique_labels": 1000,
|
| 33 |
+
"taxon_registry_sort_items": 1000,
|
| 34 |
+
"gene_index_ns": 764826353,
|
| 35 |
+
"startup_ns": 31620840765,
|
| 36 |
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"mre_distinct_splits": 71775,
|
| 37 |
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"mre_accepted_splits": 997,
|
| 38 |
+
"mre_count_ns": 5509966097,
|
| 39 |
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"mre_assembly_ns": 24235533431,
|
| 40 |
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"starting_tree_index_builds": 1,
|
| 41 |
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"starting_tree_index_nodes": 1998,
|
| 42 |
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"candidate_sets": 423,
|
| 43 |
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"candidates": 7598,
|
| 44 |
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"bipartitions_scored": 7598,
|
| 45 |
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"bipartition_score_ns": 37681163035,
|
| 46 |
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"bipartition_test_index_ns": 133326570,
|
| 47 |
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"bipartition_test_ns": 1390476540,
|
| 48 |
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"bipartition_tests": 423,
|
| 49 |
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"bipartition_test_accepts": 421,
|
| 50 |
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"bipartition_test_rejects": 2,
|
| 51 |
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"bipartition_test_negative_accepts": 0,
|
| 52 |
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"bipartition_test_max_negative_gap_twice_k": 0,
|
| 53 |
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"bipartition_test_singletons": 2,
|
| 54 |
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"bipartition_test_distance_queries": 1330050000,
|
| 55 |
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|
| 56 |
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"bipartition_test_uncovered_pairs": 0,
|
| 57 |
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"bipartition_test_untestable": 0,
|
| 58 |
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"bipartition_test_shared_genes": 0,
|
| 59 |
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"regraft_calls": 846,
|
| 60 |
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"regraft_vertices": 7177,
|
| 61 |
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"regraft_edge_ties": 0,
|
| 62 |
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"regraft_ns": 46327782364,
|
| 63 |
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"nni_edges_scored": 1994,
|
| 64 |
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"nni_full_score_passes": 1,
|
| 65 |
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"nni_local_score_passes": 0,
|
| 66 |
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"nni_local_edges_scored": 0,
|
| 67 |
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"nni_moves_accepted": 0,
|
| 68 |
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"nni_batch_passes": 0,
|
| 69 |
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"nni_support_stops": 0,
|
| 70 |
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"nni_split_support_ns": 5545821885,
|
| 71 |
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"nni_ns": 12274533968,
|
| 72 |
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"spr_rounds": 0,
|
| 73 |
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"spr_reads": 0,
|
| 74 |
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"spr_candidates_scored": 0,
|
| 75 |
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"spr_moves": 0,
|
| 76 |
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"spr_pass_ns": 0,
|
| 77 |
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"spr_ns": 0,
|
| 78 |
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"active_taxa_entries": 35570,
|
| 79 |
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"active_taxa_index_entries": 35570,
|
| 80 |
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"query_tree_selected_leaves": 8867,
|
| 81 |
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"query_tree_lca_queries": 8444,
|
| 82 |
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"query_tree_retained_nodes": 17302,
|
| 83 |
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"gene_set_scoring_calls": 756,
|
| 84 |
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"gene_set_scoring_nodes": 2492700000,
|
| 85 |
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"hdt_builds": 56775000,
|
| 86 |
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"hdt_build_ns": 29940229740,
|
| 87 |
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"hdt_queries": 1182900000,
|
| 88 |
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"hdt_recolor_ops": 8361883651,
|
| 89 |
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"hdt_nodes_recomputed": 22430469430,
|
| 90 |
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"extract_scratch_peak_bytes": 95896,
|
| 91 |
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"contract_scratch_peak_bytes": 185723,
|
| 92 |
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"state_arena_peak_bytes": 6740604,
|
| 93 |
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"worker_total_peak_bytes": 6838629,
|
| 94 |
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"max_scoring_source_taxa": 1000,
|
| 95 |
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|
| 96 |
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"child_gene_set_reuses": 424,
|
| 97 |
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|
| 98 |
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"child_gene_set_accepts": 422,
|
| 99 |
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"child_gene_set_heavy_reuses": 0,
|
| 100 |
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"child_gene_set_pair_violations": 0,
|
| 101 |
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"child_gene_set_input_nodes": 2281350000,
|
| 102 |
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"child_gene_set_output_nodes": 1116750000,
|
| 103 |
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"child_gene_set_max_accepted_ratio_ppm": 702703,
|
| 104 |
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"child_gene_set_ns": 3470053525,
|
| 105 |
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"live_child_gene_sets": 0,
|
| 106 |
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"max_child_gene_sets": 9,
|
| 107 |
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"live_child_gene_set_slots": 0,
|
| 108 |
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"max_child_gene_set_slots": 1226,
|
| 109 |
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"max_child_gene_set_bytes": 1884900000,
|
| 110 |
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"serial_children": 423,
|
| 111 |
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"parallel_children": 0,
|
| 112 |
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"parallel_child_budget_rejections": 0,
|
| 113 |
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"parallel_child_size_rejections": 0,
|
| 114 |
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"max_parallel_child_slots": 0,
|
| 115 |
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"recursion_calls": 847,
|
| 116 |
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"recursion_nonbase_calls": 423,
|
| 117 |
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"recursion_max_depth": 10,
|
| 118 |
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"recursion_taxon_mass": 9867,
|
| 119 |
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"recursion_split_tests": 8867,
|
| 120 |
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"recursion_partition_moves": 8867,
|
| 121 |
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"recursion_balanced_splits": 144,
|
| 122 |
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"recursion_skewed_splits": 2,
|
| 123 |
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"recursion_tree_node_visits": 16044,
|
| 124 |
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"recursion_radix_entries": 70920,
|
| 125 |
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"recursion_radix_bucket_ops": 864256,
|
| 126 |
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"recursion_unique_taxa": 8867,
|
| 127 |
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"recursion_root_gene_set_nodes": 149850000,
|
| 128 |
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"recursion_root_gene_set_entries": 824250000,
|
| 129 |
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"live_payload": 0,
|
| 130 |
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"peak_payload": 2069405089,
|
| 131 |
+
"live_taxa": 0,
|
| 132 |
+
"peak_taxa": 1000,
|
| 133 |
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"live_continuation_taxa": 0,
|
| 134 |
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"peak_continuation_taxa": 998,
|
| 135 |
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"live_gene_set_nodes": 0,
|
| 136 |
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"peak_gene_set_nodes": 332400000,
|
| 137 |
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"live_gene_set_entries": 0,
|
| 138 |
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"peak_gene_set_entries": 1737000000,
|
| 139 |
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"live_gene_set_taxa": 0,
|
| 140 |
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"peak_gene_set_taxa": 1226,
|
| 141 |
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"live_tree_nodes": 0,
|
| 142 |
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"peak_tree_nodes": 3038,
|
| 143 |
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"live_tree_adjacencies": 0,
|
| 144 |
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"peak_tree_adjacencies": 6072,
|
| 145 |
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"live_taxon_scratch": 0,
|
| 146 |
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"peak_taxon_scratch": 1521,
|
| 147 |
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"accounting_violations": 0,
|
| 148 |
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"nni_gain": 0,
|
| 149 |
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"spr_gain": 0,
|
| 150 |
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"complexity_contract_satisfied": true
|
| 151 |
+
}
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.default/time
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
145.07,15089244
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.extended/DONE
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
done
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.extended/args
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
-i data/sweep/t_1000_g_75000_sb_0.000001_spmin_100000_spmax_200000/R1/all_gt.tre --extended
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.extended/log
ADDED
|
File without changes
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.extended/out.tre
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
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|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.extended/stats.json
ADDED
|
@@ -0,0 +1,151 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"genes": 75000,
|
| 3 |
+
"taxa": 1000,
|
| 4 |
+
"workers": 64,
|
| 5 |
+
"progress": "off",
|
| 6 |
+
"divide": true,
|
| 7 |
+
"divide_score": "quartet",
|
| 8 |
+
"bipartition_test": true,
|
| 9 |
+
"bipartition_test_available": true,
|
| 10 |
+
"bipartition_test_complete_genes": true,
|
| 11 |
+
"bipartition_test_coefficient": 0.05,
|
| 12 |
+
"bipartition_test_crossover": 10000,
|
| 13 |
+
"bipartition_test_proposals": 1,
|
| 14 |
+
"bipartition_test_anchor_pairs": 1,
|
| 15 |
+
"bipartition_test_threshold": 0.115095,
|
| 16 |
+
"regraft_score": "raw",
|
| 17 |
+
"nni": true,
|
| 18 |
+
"nni_move_cap": false,
|
| 19 |
+
"nni_support_gate": false,
|
| 20 |
+
"nni_batch": true,
|
| 21 |
+
"spr_refine": true,
|
| 22 |
+
"spr_reads_per_pass": 128,
|
| 23 |
+
"spr_min_clade": 10,
|
| 24 |
+
"spr_candidates": 150,
|
| 25 |
+
"spr_max_rounds": 2,
|
| 26 |
+
"subproblems": 423,
|
| 27 |
+
"completed_subproblems": 423,
|
| 28 |
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"max_depth": 9,
|
| 29 |
+
"max_active_taxa": 1000,
|
| 30 |
+
"taxon_registry_ns": 502076699,
|
| 31 |
+
"taxon_registry_physical_labels": 75000000,
|
| 32 |
+
"taxon_registry_unique_labels": 1000,
|
| 33 |
+
"taxon_registry_sort_items": 1000,
|
| 34 |
+
"gene_index_ns": 776696582,
|
| 35 |
+
"startup_ns": 14071443787,
|
| 36 |
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"mre_distinct_splits": 71775,
|
| 37 |
+
"mre_accepted_splits": 997,
|
| 38 |
+
"mre_count_ns": 5596217814,
|
| 39 |
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"mre_assembly_ns": 6595836542,
|
| 40 |
+
"starting_tree_index_builds": 1,
|
| 41 |
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"starting_tree_index_nodes": 1998,
|
| 42 |
+
"candidate_sets": 423,
|
| 43 |
+
"candidates": 7598,
|
| 44 |
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"bipartitions_scored": 7598,
|
| 45 |
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"bipartition_score_ns": 37366199883,
|
| 46 |
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"bipartition_test_index_ns": 111022533,
|
| 47 |
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"bipartition_test_ns": 1403746753,
|
| 48 |
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"bipartition_tests": 423,
|
| 49 |
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"bipartition_test_accepts": 421,
|
| 50 |
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"bipartition_test_rejects": 2,
|
| 51 |
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"bipartition_test_negative_accepts": 0,
|
| 52 |
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"bipartition_test_max_negative_gap_twice_k": 0,
|
| 53 |
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"bipartition_test_singletons": 2,
|
| 54 |
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"bipartition_test_distance_queries": 1330050000,
|
| 55 |
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|
| 56 |
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"bipartition_test_uncovered_pairs": 0,
|
| 57 |
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"bipartition_test_untestable": 0,
|
| 58 |
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"bipartition_test_shared_genes": 0,
|
| 59 |
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"regraft_calls": 846,
|
| 60 |
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"regraft_vertices": 7177,
|
| 61 |
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"regraft_edge_ties": 0,
|
| 62 |
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"regraft_ns": 46325458393,
|
| 63 |
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"nni_edges_scored": 1994,
|
| 64 |
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"nni_full_score_passes": 1,
|
| 65 |
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"nni_local_score_passes": 0,
|
| 66 |
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"nni_local_edges_scored": 0,
|
| 67 |
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"nni_moves_accepted": 0,
|
| 68 |
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"nni_batch_passes": 0,
|
| 69 |
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"nni_support_stops": 0,
|
| 70 |
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"nni_split_support_ns": 0,
|
| 71 |
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"nni_ns": 6761438146,
|
| 72 |
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"spr_rounds": 1,
|
| 73 |
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"spr_reads": 125,
|
| 74 |
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"spr_candidates_scored": 0,
|
| 75 |
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"spr_moves": 0,
|
| 76 |
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"spr_pass_ns": 373414247888,
|
| 77 |
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"spr_ns": 373414287757,
|
| 78 |
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"active_taxa_entries": 163570,
|
| 79 |
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"active_taxa_index_entries": 163570,
|
| 80 |
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"query_tree_selected_leaves": 8867,
|
| 81 |
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"query_tree_lca_queries": 8444,
|
| 82 |
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"query_tree_retained_nodes": 17302,
|
| 83 |
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"gene_set_scoring_calls": 756,
|
| 84 |
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"gene_set_scoring_nodes": 2492700000,
|
| 85 |
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"hdt_builds": 56775000,
|
| 86 |
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"hdt_build_ns": 29604160690,
|
| 87 |
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"hdt_queries": 1182900000,
|
| 88 |
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"hdt_recolor_ops": 8361883651,
|
| 89 |
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"hdt_nodes_recomputed": 22430469430,
|
| 90 |
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"extract_scratch_peak_bytes": 95896,
|
| 91 |
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"contract_scratch_peak_bytes": 185723,
|
| 92 |
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"state_arena_peak_bytes": 6740604,
|
| 93 |
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"worker_total_peak_bytes": 6838629,
|
| 94 |
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"max_scoring_source_taxa": 1000,
|
| 95 |
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"scoring_source_inflation_violations": 0,
|
| 96 |
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"child_gene_set_reuses": 424,
|
| 97 |
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"child_gene_set_attempts": 422,
|
| 98 |
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"child_gene_set_accepts": 422,
|
| 99 |
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"child_gene_set_heavy_reuses": 0,
|
| 100 |
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"child_gene_set_pair_violations": 0,
|
| 101 |
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"child_gene_set_input_nodes": 2281350000,
|
| 102 |
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"child_gene_set_output_nodes": 1116750000,
|
| 103 |
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"child_gene_set_max_accepted_ratio_ppm": 702703,
|
| 104 |
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"child_gene_set_ns": 3489399680,
|
| 105 |
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"live_child_gene_sets": 0,
|
| 106 |
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"max_child_gene_sets": 9,
|
| 107 |
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"live_child_gene_set_slots": 0,
|
| 108 |
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"max_child_gene_set_slots": 1226,
|
| 109 |
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"max_child_gene_set_bytes": 1884900000,
|
| 110 |
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"serial_children": 423,
|
| 111 |
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"parallel_children": 0,
|
| 112 |
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"parallel_child_budget_rejections": 0,
|
| 113 |
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"parallel_child_size_rejections": 0,
|
| 114 |
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"max_parallel_child_slots": 0,
|
| 115 |
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"recursion_calls": 847,
|
| 116 |
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"recursion_nonbase_calls": 423,
|
| 117 |
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"recursion_max_depth": 10,
|
| 118 |
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"recursion_taxon_mass": 9867,
|
| 119 |
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"recursion_split_tests": 8867,
|
| 120 |
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"recursion_partition_moves": 8867,
|
| 121 |
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"recursion_balanced_splits": 144,
|
| 122 |
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"recursion_skewed_splits": 2,
|
| 123 |
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"recursion_tree_node_visits": 16044,
|
| 124 |
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"recursion_radix_entries": 70920,
|
| 125 |
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"recursion_radix_bucket_ops": 864256,
|
| 126 |
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"recursion_unique_taxa": 8867,
|
| 127 |
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"recursion_root_gene_set_nodes": 149850000,
|
| 128 |
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"recursion_root_gene_set_entries": 824250000,
|
| 129 |
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"live_payload": 0,
|
| 130 |
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"peak_payload": 2069405089,
|
| 131 |
+
"live_taxa": 0,
|
| 132 |
+
"peak_taxa": 1000,
|
| 133 |
+
"live_continuation_taxa": 0,
|
| 134 |
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"peak_continuation_taxa": 998,
|
| 135 |
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"live_gene_set_nodes": 0,
|
| 136 |
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"peak_gene_set_nodes": 332400000,
|
| 137 |
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"live_gene_set_entries": 0,
|
| 138 |
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"peak_gene_set_entries": 1737000000,
|
| 139 |
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"live_gene_set_taxa": 0,
|
| 140 |
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"peak_gene_set_taxa": 1226,
|
| 141 |
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"live_tree_nodes": 0,
|
| 142 |
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"peak_tree_nodes": 3038,
|
| 143 |
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"live_tree_adjacencies": 0,
|
| 144 |
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"peak_tree_adjacencies": 6072,
|
| 145 |
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"live_taxon_scratch": 0,
|
| 146 |
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"peak_taxon_scratch": 1521,
|
| 147 |
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"accounting_violations": 0,
|
| 148 |
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"nni_gain": 0,
|
| 149 |
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"spr_gain": 0,
|
| 150 |
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"complexity_contract_satisfied": true
|
| 151 |
+
}
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R1.extended/time
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
495.13,15090040
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.default/DONE
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
done
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.default/args
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
-i data/sweep/t_1000_g_75000_sb_0.000001_spmin_100000_spmax_200000/R2/all_gt.tre
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.default/log
ADDED
|
File without changes
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.default/out.tre
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
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|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.default/stats.json
ADDED
|
@@ -0,0 +1,151 @@
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|
|
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|
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|
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|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"genes": 75000,
|
| 3 |
+
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
+
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|
| 9 |
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|
| 10 |
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|
| 11 |
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|
| 12 |
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|
| 13 |
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|
| 14 |
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|
| 15 |
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|
| 16 |
+
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|
| 17 |
+
"nni": true,
|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
+
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|
| 22 |
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|
| 23 |
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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|
| 32 |
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|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
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|
| 90 |
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|
| 91 |
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|
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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"spr_gain": 0,
|
| 150 |
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"complexity_contract_satisfied": true
|
| 151 |
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}
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.default/time
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
146.70,15177004
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.extended/args
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
-i data/sweep/t_1000_g_75000_sb_0.000001_spmin_100000_spmax_200000/R2/all_gt.tre --extended
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.extended/log
ADDED
|
File without changes
|
runs/hostkey-2026-10-22-epyc9354/out/runs/grid.genes.t1000g75000.R2.extended/time
ADDED
|
File without changes
|