velographx-benchmarks / artifacts /benchmarks /storage_ab_benchmark.cpp
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#include <algorithm>
#include <chrono>
#include <cstdint>
#include <fstream>
#include <iostream>
#include <numeric>
#include <span>
#include <stdexcept>
#include <string>
#include <unordered_set>
#include <utility>
#include <vector>
#ifdef __linux__
#include <malloc.h>
#endif
#include "velographx/storage/dynamic_graph.hpp"
namespace {
using velographx::EdgeUpdate;
using velographx::UpdateBatch;
using velographx::VertexId;
using Clock = std::chrono::steady_clock;
std::size_t rss_kb() {
#ifdef __linux__
std::ifstream in("/proc/self/status");
std::string key;
while (in >> key) {
if (key == "VmRSS:") {
std::size_t value = 0;
std::string unit;
in >> value >> unit;
return value;
}
std::string rest;
std::getline(in, rest);
}
#endif
return 0;
}
void trim_allocator() {
#ifdef __linux__
malloc_trim(0);
#endif
}
double elapsed_ms(Clock::time_point begin, Clock::time_point end) {
return std::chrono::duration<double, std::milli>(end - begin).count();
}
std::vector<std::pair<VertexId, VertexId>> make_edges(std::uint64_t target_edges,
std::uint32_t degree) {
if (degree == 0 || target_edges < degree) throw std::invalid_argument("invalid graph size");
const std::uint64_t vertices64 = (target_edges + degree - 1) / degree;
if (vertices64 > std::numeric_limits<VertexId>::max()) throw std::invalid_argument("too many vertices");
const auto vertices = static_cast<VertexId>(vertices64);
std::vector<std::pair<VertexId, VertexId>> edges;
edges.reserve(static_cast<std::size_t>(target_edges));
for (VertexId u = 0; u < vertices && edges.size() < target_edges; ++u) {
for (std::uint32_t d = 1; d <= degree && edges.size() < target_edges; ++d) {
const auto v = static_cast<VertexId>((static_cast<std::uint64_t>(u) + d) % vertices);
if (u != v) edges.emplace_back(u, v);
}
}
return edges;
}
UpdateBatch make_updates(std::size_t vertices, std::uint32_t degree, std::size_t count) {
UpdateBatch batch;
batch.updates.reserve(count);
for (std::size_t i = 0; i < count; ++i) {
const auto u = static_cast<VertexId>((i * 2654435761ULL) % vertices);
if ((i & 1U) == 0) {
const auto d = static_cast<std::uint32_t>(1 + (i % degree));
const auto v = static_cast<VertexId>((static_cast<std::uint64_t>(u) + d) % vertices);
batch.remove(u, v);
} else {
const auto d = static_cast<std::uint32_t>(degree + 1 + (i % degree));
const auto v = static_cast<VertexId>((static_cast<std::uint64_t>(u) + d) % vertices);
batch.add(u, v);
}
}
return batch;
}
std::vector<VertexId> probe_vertices(std::size_t vertices, std::size_t count) {
std::vector<VertexId> probes;
probes.reserve(count);
for (std::size_t i = 0; i < count; ++i) {
probes.push_back(static_cast<VertexId>((i * 11400714819323198485ULL) % vertices));
}
return probes;
}
std::uint64_t mix_row(std::uint64_t seed, VertexId u, std::span<const VertexId> row) {
std::uint64_t h = seed ^ (static_cast<std::uint64_t>(u) + 0x9e3779b97f4a7c15ULL);
h ^= static_cast<std::uint64_t>(row.size()) + (h << 6) + (h >> 2);
for (auto v : row) h ^= static_cast<std::uint64_t>(v) + 0x9e3779b97f4a7c15ULL + (h << 6) + (h >> 2);
return h;
}
class LegacyDynamicGraph {
public:
explicit LegacyDynamicGraph(std::size_t vertices = 0)
: base_(vertices), delta_add_(vertices), delta_del_(vertices) {}
std::size_t vertex_count() const noexcept { return base_.size(); }
void ensure_vertex(VertexId v) {
const auto n = static_cast<std::size_t>(v) + 1;
if (n > base_.size()) {
base_.resize(n);
delta_add_.resize(n);
delta_del_.resize(n);
}
}
void bulk_load_edges(const std::vector<std::pair<VertexId, VertexId>>& edges) {
VertexId max_vertex = 0;
bool saw = false;
for (const auto& [u, v] : edges) {
if (u == v) continue;
max_vertex = std::max(max_vertex, std::max(u, v));
saw = true;
}
if (saw) ensure_vertex(max_vertex);
for (auto& row : base_) row.clear();
for (auto& row : delta_add_) row.clear();
for (auto& row : delta_del_) row.clear();
std::vector<std::size_t> degrees(base_.size(), 0);
for (const auto& [u, v] : edges) if (u != v) ++degrees[u];
for (std::size_t u = 0; u < base_.size(); ++u) base_[u].reserve(degrees[u]);
for (const auto& [u, v] : edges) if (u != v) base_[u].push_back(v);
for (auto& row : base_) {
std::sort(row.begin(), row.end());
row.erase(std::unique(row.begin(), row.end()), row.end());
}
}
void apply(const UpdateBatch& batch) {
for (const auto& op : batch.updates) {
ensure_vertex(std::max(op.src, op.dst));
apply_one(op.src, op.dst, op.add);
}
}
std::vector<VertexId> neighbors(VertexId u) const {
if (u >= base_.size()) return {};
std::vector<VertexId> out;
out.reserve(base_[u].size() + delta_add_[u].size());
for (auto v : base_[u]) if (!delta_del_[u].contains(v)) out.push_back(v);
for (auto v : delta_add_[u]) if (!delta_del_[u].contains(v)) out.push_back(v);
std::sort(out.begin(), out.end());
out.erase(std::unique(out.begin(), out.end()), out.end());
return out;
}
void compact() {
for (VertexId u = 0; u < base_.size(); ++u) {
if (delta_add_[u].empty() && delta_del_[u].empty()) continue;
base_[u] = neighbors(u);
delta_add_[u].clear();
delta_del_[u].clear();
}
}
std::size_t edge_count() const {
std::size_t total = 0;
for (const auto& row : base_) total += row.size();
return total;
}
private:
void apply_one(VertexId u, VertexId v, bool add) {
if (add) {
delta_del_[u].erase(v);
if (!std::binary_search(base_[u].begin(), base_[u].end(), v)) delta_add_[u].insert(v);
} else {
delta_add_[u].erase(v);
if (std::binary_search(base_[u].begin(), base_[u].end(), v)) delta_del_[u].insert(v);
}
}
std::vector<std::vector<VertexId>> base_;
std::vector<std::unordered_set<VertexId>> delta_add_;
std::vector<std::unordered_set<VertexId>> delta_del_;
};
template <class Graph>
std::pair<double, std::uint64_t> neighbor_probe(Graph& graph, const std::vector<VertexId>& probes) {
std::uint64_t checksum = 1469598103934665603ULL;
const auto begin = Clock::now();
for (auto u : probes) {
const auto row = graph.neighbors(u);
checksum = mix_row(checksum, u, row);
}
const auto end = Clock::now();
const auto ns = std::chrono::duration<double, std::nano>(end - begin).count();
return {ns / static_cast<double>(probes.size()), checksum};
}
void print_common(const std::string& design, std::uint64_t target_edges, std::size_t vertices,
std::uint32_t degree, double load_ms, std::size_t loaded_rss,
std::size_t storage_bytes, std::size_t updates, double update_ms,
std::size_t update_rss, double neighbor_ns, std::uint64_t checksum,
double compact_ms, std::size_t compact_rss, std::size_t final_edges) {
const double ups = update_ms > 0.0 ? static_cast<double>(updates) * 1000.0 / update_ms : 0.0;
std::cout << "{\"design\":\"" << design << "\",\"target_edges\":" << target_edges
<< ",\"vertices\":" << vertices << ",\"degree\":" << degree
<< ",\"bulk_load_ms\":" << load_ms << ",\"loaded_rss_kb\":" << loaded_rss
<< ",\"reported_storage_bytes\":" << storage_bytes
<< ",\"updates\":" << updates << ",\"update_ms\":" << update_ms
<< ",\"updates_per_second\":" << ups << ",\"rss_after_updates_kb\":" << update_rss
<< ",\"neighbor_ns_per_probe\":" << neighbor_ns << ",\"neighbor_checksum\":" << checksum
<< ",\"compaction_ms\":" << compact_ms << ",\"rss_after_compaction_kb\":" << compact_rss
<< ",\"final_edges\":" << final_edges << "}\n";
}
void run_current(std::uint64_t target_edges, std::uint32_t degree, std::size_t update_count,
std::size_t probes_count) {
auto edges = make_edges(target_edges, degree);
const auto vertices = static_cast<std::size_t>((target_edges + degree - 1) / degree);
velographx::DynamicGraph graph(vertices, true);
const auto t0 = Clock::now();
graph.bulk_load_edges(edges);
const auto t1 = Clock::now();
edges.clear(); edges.shrink_to_fit(); trim_allocator();
const auto loaded_rss = rss_kb();
const auto storage_bytes = graph.storage_bytes();
auto updates = make_updates(vertices, degree, update_count);
const auto u0 = Clock::now();
graph.apply(updates);
const auto u1 = Clock::now();
updates.updates.clear(); updates.updates.shrink_to_fit(); trim_allocator();
const auto update_rss = rss_kb();
const auto [neighbor_ns, checksum] = neighbor_probe(graph, probe_vertices(vertices, probes_count));
const auto c0 = Clock::now();
graph.compact();
const auto c1 = Clock::now();
trim_allocator();
print_common("segmented-packed-reverse", target_edges, vertices, degree,
elapsed_ms(t0, t1), loaded_rss, storage_bytes, update_count,
elapsed_ms(u0, u1), update_rss, neighbor_ns, checksum,
elapsed_ms(c0, c1), rss_kb(), graph.edge_count_directed());
}
void run_legacy(std::uint64_t target_edges, std::uint32_t degree, std::size_t update_count,
std::size_t probes_count) {
auto edges = make_edges(target_edges, degree);
const auto vertices = static_cast<std::size_t>((target_edges + degree - 1) / degree);
LegacyDynamicGraph graph(vertices);
const auto t0 = Clock::now();
graph.bulk_load_edges(edges);
const auto t1 = Clock::now();
edges.clear(); edges.shrink_to_fit(); trim_allocator();
const auto loaded_rss = rss_kb();
auto updates = make_updates(vertices, degree, update_count);
const auto u0 = Clock::now();
graph.apply(updates);
const auto u1 = Clock::now();
updates.updates.clear(); updates.updates.shrink_to_fit(); trim_allocator();
const auto update_rss = rss_kb();
const auto [neighbor_ns, checksum] = neighbor_probe(graph, probe_vertices(vertices, probes_count));
const auto c0 = Clock::now();
graph.compact();
const auto c1 = Clock::now();
trim_allocator();
print_common("legacy-vector-hash", target_edges, vertices, degree,
elapsed_ms(t0, t1), loaded_rss, 0, update_count,
elapsed_ms(u0, u1), update_rss, neighbor_ns, checksum,
elapsed_ms(c0, c1), rss_kb(), graph.edge_count());
}
void run_reverse(std::uint64_t target_edges, std::uint32_t degree) {
auto edges = make_edges(target_edges, degree);
const auto vertices = static_cast<std::size_t>((target_edges + degree - 1) / degree);
velographx::storage_detail::SegmentedCsr out;
const auto b0 = Clock::now();
out.build(vertices, std::move(edges));
const auto b1 = Clock::now();
trim_allocator();
const auto forward_rss = rss_kb();
const auto forward_bytes = out.storage_bytes();
velographx::storage_detail::SegmentedCsr in;
const auto r0 = Clock::now();
in.build_transpose_from(out);
const auto r1 = Clock::now();
trim_allocator();
const auto both_rss = rss_kb();
const auto reverse_bytes = in.storage_bytes();
const auto rss_delta = both_rss >= forward_rss ? both_rss - forward_rss : 0;
std::cout << "{\"design\":\"reverse-base-overhead\",\"target_edges\":" << target_edges
<< ",\"vertices\":" << vertices << ",\"degree\":" << degree
<< ",\"forward_build_ms\":" << elapsed_ms(b0, b1)
<< ",\"transpose_build_ms\":" << elapsed_ms(r0, r1)
<< ",\"forward_storage_bytes\":" << forward_bytes
<< ",\"reverse_storage_bytes\":" << reverse_bytes
<< ",\"forward_rss_kb\":" << forward_rss
<< ",\"both_rss_kb\":" << both_rss
<< ",\"reverse_rss_delta_kb\":" << rss_delta << "}\n";
}
} // namespace
int main(int argc, char** argv) {
if (argc < 3 || argc > 6) {
std::cerr << "usage: velographx_storage_ab_benchmark <current|legacy|reverse> <target-edges> [degree=20] [updates] [probes]\n";
return 2;
}
try {
const std::string mode = argv[1];
const auto target_edges = std::stoull(argv[2]);
const auto degree = argc >= 4 ? static_cast<std::uint32_t>(std::stoul(argv[3])) : 20U;
const auto updates = argc >= 5 ? static_cast<std::size_t>(std::stoull(argv[4]))
: static_cast<std::size_t>(std::max<std::uint64_t>(1000, target_edges / 1000));
const auto probes = argc >= 6 ? static_cast<std::size_t>(std::stoull(argv[5])) : 8192U;
if (mode == "current") run_current(target_edges, degree, updates, probes);
else if (mode == "legacy") run_legacy(target_edges, degree, updates, probes);
else if (mode == "reverse") run_reverse(target_edges, degree);
else throw std::invalid_argument("unknown mode");
} catch (const std::exception& e) {
std::cerr << "error: " << e.what() << '\n';
return 2;
}
return 0;
}