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dswah/pyGAM | pygam/terms.py | TermList.info | def info(self):
"""get information about the terms in the term list
Parameters
----------
Returns
-------
dict containing information to duplicate the term list
"""
info = {'term_type': 'term_list', 'verbose': self.verbose}
info.update({'terms':[... | python | def info(self):
"""get information about the terms in the term list
Parameters
----------
Returns
-------
dict containing information to duplicate the term list
"""
info = {'term_type': 'term_list', 'verbose': self.verbose}
info.update({'terms':[... | [
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dswah/pyGAM | pygam/terms.py | TermList.build_from_info | def build_from_info(cls, info):
"""build a TermList instance from a dict
Parameters
----------
cls : class
info : dict
contains all information needed to build the term
Return
------
TermList instance
"""
info = deepcopy(info... | python | def build_from_info(cls, info):
"""build a TermList instance from a dict
Parameters
----------
cls : class
info : dict
contains all information needed to build the term
Return
------
TermList instance
"""
info = deepcopy(info... | [
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dswah/pyGAM | pygam/terms.py | TermList.pop | def pop(self, i=None):
"""remove the ith term from the term list
Parameters
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term to remove from term list
by default the last term is popped.
Returns
-------
term : Term
"""
if i == None:
... | python | def pop(self, i=None):
"""remove the ith term from the term list
Parameters
---------
i : int, optional
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by default the last term is popped.
Returns
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term : Term
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dswah/pyGAM | pygam/terms.py | TermList.get_coef_indices | def get_coef_indices(self, i=-1):
"""get the indices for the coefficients of a term in the term list
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Parameters
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i : int
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thoughtworksarts/EmoPy | EmoPy/src/csv_data_loader.py | CSVDataLoader.load_data | def load_data(self):
"""
Loads image and label data from specified csv file path.
:return: Dataset object containing image and label data.
"""
print('Extracting training data from csv...')
images = list()
labels = list()
emotion_index_map = dict()
... | python | def load_data(self):
"""
Loads image and label data from specified csv file path.
:return: Dataset object containing image and label data.
"""
print('Extracting training data from csv...')
images = list()
labels = list()
emotion_index_map = dict()
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thoughtworksarts/EmoPy | EmoPy/src/data_loader.py | _DataLoader._load_dataset | def _load_dataset(self, images, labels, emotion_index_map):
"""
Loads Dataset object with images, labels, and other data.
:param images: numpy array of image data
:param labels: numpy array of one-hot vector labels
:param emotion_index_map: map linking string/integer emotion cla... | python | def _load_dataset(self, images, labels, emotion_index_map):
"""
Loads Dataset object with images, labels, and other data.
:param images: numpy array of image data
:param labels: numpy array of one-hot vector labels
:param emotion_index_map: map linking string/integer emotion cla... | [
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thoughtworksarts/EmoPy | EmoPy/src/directory_data_loader.py | DirectoryDataLoader.load_data | def load_data(self):
"""
Loads image and label data from specified directory path.
:return: Dataset object containing image and label data.
"""
images = list()
labels = list()
emotion_index_map = dict()
label_directories = [dir for dir in os.listdir(self.... | python | def load_data(self):
"""
Loads image and label data from specified directory path.
:return: Dataset object containing image and label data.
"""
images = list()
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label_directories = [dir for dir in os.listdir(self.... | [
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thoughtworksarts/EmoPy | EmoPy/src/directory_data_loader.py | DirectoryDataLoader._check_directory_arguments | def _check_directory_arguments(self):
"""
Validates arguments for loading from directories, including static image and time series directories.
"""
if not os.path.isdir(self.datapath):
raise (NotADirectoryError('Directory does not exist: %s' % self.datapath))
if self.... | python | def _check_directory_arguments(self):
"""
Validates arguments for loading from directories, including static image and time series directories.
"""
if not os.path.isdir(self.datapath):
raise (NotADirectoryError('Directory does not exist: %s' % self.datapath))
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thoughtworksarts/EmoPy | EmoPy/src/fermodel.py | FERModel.predict | def predict(self, image_file):
"""
Predicts discrete emotion for given image.
:param images: image file (jpg or png format)
"""
image = misc.imread(image_file)
gray_image = image
if len(image.shape) > 2:
gray_image = cv2.cvtColor(image, code=cv2.COLOR... | python | def predict(self, image_file):
"""
Predicts discrete emotion for given image.
:param images: image file (jpg or png format)
"""
image = misc.imread(image_file)
gray_image = image
if len(image.shape) > 2:
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thoughtworksarts/EmoPy | EmoPy/src/fermodel.py | FERModel._check_emotion_set_is_supported | def _check_emotion_set_is_supported(self):
"""
Validates set of user-supplied target emotions.
"""
supported_emotion_subsets = [
set(['anger', 'fear', 'surprise', 'calm']),
set(['happiness', 'disgust', 'surprise']),
set(['anger', 'fear', 'surprise']),
... | python | def _check_emotion_set_is_supported(self):
"""
Validates set of user-supplied target emotions.
"""
supported_emotion_subsets = [
set(['anger', 'fear', 'surprise', 'calm']),
set(['happiness', 'disgust', 'surprise']),
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thoughtworksarts/EmoPy | EmoPy/src/fermodel.py | FERModel._choose_model_from_target_emotions | def _choose_model_from_target_emotions(self):
"""
Initializes pre-trained deep learning model for the set of target emotions supplied by user.
"""
model_indices = [self.emotion_index_map[emotion] for emotion in self.target_emotions]
sorted_indices = [str(idx) for idx in sorted(mo... | python | def _choose_model_from_target_emotions(self):
"""
Initializes pre-trained deep learning model for the set of target emotions supplied by user.
"""
model_indices = [self.emotion_index_map[emotion] for emotion in self.target_emotions]
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thoughtworksarts/EmoPy | EmoPy/library/image.py | apply_transform | def apply_transform(sample,
transform_matrix,
channel_axis=0,
fill_mode='nearest',
cval=0.):
"""Apply the image transformation specified by a matrix.
# Arguments
sample: 2D numpy array, single sample.
transform_matr... | python | def apply_transform(sample,
transform_matrix,
channel_axis=0,
fill_mode='nearest',
cval=0.):
"""Apply the image transformation specified by a matrix.
# Arguments
sample: 2D numpy array, single sample.
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thoughtworksarts/EmoPy | EmoPy/library/image.py | ImageDataGenerator.standardize | def standardize(self, x):
"""Apply the normalization configuration to a batch of inputs.
# Arguments
x: batch of inputs to be normalized.
# Returns
The inputs, normalized.
"""
if self.preprocessing_function:
x = self.preprocessing_function(x)... | python | def standardize(self, x):
"""Apply the normalization configuration to a batch of inputs.
# Arguments
x: batch of inputs to be normalized.
# Returns
The inputs, normalized.
"""
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thoughtworksarts/EmoPy | EmoPy/library/image.py | ImageDataGenerator.fit | def fit(self, x,
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rounds=1,
seed=None):
"""Fits internal statistics to some sample data.
Required for featurewise_center, featurewise_std_normalization
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# Arguments
x: Numpy array, the data to fit on. Shoul... | python | def fit(self, x,
augment=False,
rounds=1,
seed=None):
"""Fits internal statistics to some sample data.
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thoughtworksarts/EmoPy | EmoPy/library/image.py | NumpyArrayIterator.next | def next(self):
"""For python 2.x.
# Returns
The next batch.
"""
# Keeps under lock only the mechanism which advances
# the indexing of each batch.
with self.lock:
index_array = next(self.index_generator)
# The transformation of images is ... | python | def next(self):
"""For python 2.x.
# Returns
The next batch.
"""
# Keeps under lock only the mechanism which advances
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thoughtworksarts/EmoPy | EmoPy/src/neuralnets.py | ConvolutionalLstmNN._init_model | def _init_model(self):
"""
Composes all layers of CNN.
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model = Sequential()
model.add(ConvLSTM2D(filters=self.filters, kernel_size=self.kernel_size, activation=self.activation,
input_shape=[self.time_delay] + list(self.image_size) + [self.channels... | python | def _init_model(self):
"""
Composes all layers of CNN.
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sosreport/sos | sos/plugins/foreman.py | Foreman.build_query_cmd | def build_query_cmd(self, query, csv=False):
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sosreport/sos | sos/policies/__init__.py | InitSystem.is_enabled | def is_enabled(self, name):
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if self.services and name in self.services:
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sosreport/sos | sos/policies/__init__.py | InitSystem.is_disabled | def is_disabled(self, name):
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sosreport/sos | sos/policies/__init__.py | InitSystem._query_service | def _query_service(self, name):
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sosreport/sos | sos/policies/__init__.py | InitSystem.get_service_status | def get_service_status(self, name):
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sosreport/sos | sos/policies/__init__.py | PackageManager.all_pkgs_by_name_regex | def all_pkgs_by_name_regex(self, regex_name, flags=0):
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Return a list of packages that match regex_name.
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sosreport/sos | sos/policies/__init__.py | PackageManager.pkg_by_name | def pkg_by_name(self, name):
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sosreport/sos | sos/policies/__init__.py | PackageManager.all_pkgs | def all_pkgs(self):
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Return a list of all packages.
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sosreport/sos | sos/policies/__init__.py | PackageManager.all_files | def all_files(self):
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sosreport/sos | sos/policies/__init__.py | PresetDefaults.write | def write(self, presets_path):
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sosreport/sos | sos/policies/__init__.py | Policy.get_archive_name | def get_archive_name(self):
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sosreport/sos | sos/policies/__init__.py | Policy.validate_plugin | def validate_plugin(self, plugin_class, experimental=False):
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valid_subclasses = [IndependentPlugin] + self.valid_subclasses
if experimental:
valid_subclasses += [ExperimentalPlugin]
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sosreport/sos | sos/policies/__init__.py | Policy._print | def _print(self, msg=None, always=False):
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sosreport/sos | sos/policies/__init__.py | Policy.get_msg | def get_msg(self):
"""This method is used to prepare the preamble text to display to
the user in non-batch mode. If your policy sets self.distro that
text will be substituted accordingly. You can also override this
method to do something more complicated."""
width = 72
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"""This method is used to prepare the preamble text to display to
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sosreport/sos | sos/policies/__init__.py | Policy.register_presets | def register_presets(self, presets, replace=False):
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sosreport/sos | sos/policies/__init__.py | Policy.find_preset | def find_preset(self, preset):
"""Find a preset profile matching the specified preset string.
:param preset: a string containing a preset profile name.
:returns: a matching PresetProfile.
"""
# FIXME: allow fuzzy matching?
for match in self.presets.keys():
... | python | def find_preset(self, preset):
"""Find a preset profile matching the specified preset string.
:param preset: a string containing a preset profile name.
:returns: a matching PresetProfile.
"""
# FIXME: allow fuzzy matching?
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sosreport/sos | sos/policies/__init__.py | Policy.load_presets | def load_presets(self, presets_path=None):
"""Load presets from disk.
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or the default location at ``/var/lib/sos/presets``.
:param presets_path: a directory containing JSON presets.
"""
presets_path = p... | python | def load_presets(self, presets_path=None):
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sosreport/sos | sos/policies/__init__.py | Policy.add_preset | def add_preset(self, name=None, desc=None, note=None, opts=SoSOptions()):
"""Add a new on-disk preset and write it to the configured
presets path.
:param preset: the new PresetDefaults to add
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"""Add a new on-disk preset and write it to the configured
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sosreport/sos | sos/policies/__init__.py | LinuxPolicy.lsmod | def lsmod(self):
"""Return a list of kernel module names as strings.
"""
lines = shell_out("lsmod", timeout=0).splitlines()
return [line.split()[0].strip() for line in lines] | python | def lsmod(self):
"""Return a list of kernel module names as strings.
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sosreport/sos | sos/plugins/lvm2.py | Lvm2.do_lvmdump | def do_lvmdump(self, metadata=False):
"""Collects an lvmdump in standard format with optional metadata
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"""
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sosreport/sos | sos/__init__.py | SoSOptions.__str | def __str(self, quote=False, sep=" ", prefix="", suffix=""):
"""Format a SoSOptions object as a human or machine readable string.
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sosreport/sos | sos/__init__.py | SoSOptions.from_args | def from_args(cls, args):
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:param args: parsed command line arguments
:returns: an initialised SoSOptions object
:returntype: SoSOptions
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"""Initialise a new SoSOptions object from a ``Namespace``
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sosreport/sos | sos/__init__.py | SoSOptions.merge | def merge(self, src, skip_default=True):
"""Merge another set of ``SoSOptions`` into this object.
Merge two ``SoSOptions`` objects by setting unset or default
values to their value in the ``src`` object.
:param src: the ``SoSOptions`` object to copy from
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"""Merge another set of ``SoSOptions`` into this object.
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sosreport/sos | sos/__init__.py | SoSOptions.dict | def dict(self):
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sosreport/sos | sos/__init__.py | SoSOptions.to_args | def to_args(self):
"""Return command arguments for this object.
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``["--all-logs", "-vvv"]``
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sosreport/sos | sos/plugins/autofs.py | Autofs.checkdebug | def checkdebug(self):
""" testing if autofs debug has been enabled anywhere
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# Global debugging
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""" testing if autofs debug has been enabled anywhere
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# Global debugging
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sosreport/sos | sos/plugins/autofs.py | Autofs.getdaemondebug | def getdaemondebug(self):
""" capture daemon debug output
"""
debugout = self.file_grep(r"^(daemon.*)\s+(\/var\/log\/.*)",
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for i in debugout:
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""" capture daemon debug output
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sosreport/sos | sos/plugins/jars.py | Jars.is_jar | def is_jar(path):
"""Check whether given file is a JAR file.
JARs are ZIP files which usually include a manifest
at the canonical location 'META-INF/MANIFEST.MF'.
"""
if os.path.isfile(path) and zipfile.is_zipfile(path):
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"""Check whether given file is a JAR file.
JARs are ZIP files which usually include a manifest
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sosreport/sos | sos/plugins/jars.py | Jars.get_maven_id | def get_maven_id(jar_path):
"""Extract Maven coordinates from a given JAR file, if possible.
JARs build by Maven (most popular Java build system) contain
'pom.properties' file. We can extract Maven coordinates
from there.
"""
props = {}
try:
with zip... | python | def get_maven_id(jar_path):
"""Extract Maven coordinates from a given JAR file, if possible.
JARs build by Maven (most popular Java build system) contain
'pom.properties' file. We can extract Maven coordinates
from there.
"""
props = {}
try:
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sosreport/sos | sos/plugins/jars.py | Jars.get_jar_id | def get_jar_id(jar_path):
"""Compute JAR id.
Returns sha1 hash of a given JAR file.
"""
jar_id = ""
try:
with open(jar_path, mode="rb") as f:
m = hashlib.sha1()
for buf in iter(partial(f.read, 4096), b''):
m.update(... | python | def get_jar_id(jar_path):
"""Compute JAR id.
Returns sha1 hash of a given JAR file.
"""
jar_id = ""
try:
with open(jar_path, mode="rb") as f:
m = hashlib.sha1()
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sosreport/sos | sos/plugins/qpid.py | Qpid.setup | def setup(self):
""" performs data collection for qpid broker """
options = ""
amqps_prefix = "" # set amqps:// when SSL is used
if self.get_option("ssl"):
amqps_prefix = "amqps://"
# for either present option, add --option=value to 'options' variable
for opt... | python | def setup(self):
""" performs data collection for qpid broker """
options = ""
amqps_prefix = "" # set amqps:// when SSL is used
if self.get_option("ssl"):
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sosreport/sos | sos/sosreport.py | SoSReport._exception | def _exception(etype, eval_, etrace):
""" Wrap exception in debugger if not in tty """
if hasattr(sys, 'ps1') or not sys.stderr.isatty():
# we are in interactive mode or we don't have a tty-like
# device, so we call the default hook
sys.__excepthook__(etype, eval_, et... | python | def _exception(etype, eval_, etrace):
""" Wrap exception in debugger if not in tty """
if hasattr(sys, 'ps1') or not sys.stderr.isatty():
# we are in interactive mode or we don't have a tty-like
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sosreport/sos | sos/sosreport.py | SoSReport.add_preset | def add_preset(self, name, desc="", note=""):
"""Add a new command line preset for the current options with the
specified name.
:param name: the name of the new preset
:returns: True on success or False otherwise
"""
policy = self.policy
if policy.fin... | python | def add_preset(self, name, desc="", note=""):
"""Add a new command line preset for the current options with the
specified name.
:param name: the name of the new preset
:returns: True on success or False otherwise
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sosreport/sos | sos/sosreport.py | SoSReport.del_preset | def del_preset(self, name):
"""Delete a named command line preset.
:param name: the name of the preset to delete
:returns: True on success or False otherwise
"""
policy = self.policy
if not policy.find_preset(name):
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"""Delete a named command line preset.
:param name: the name of the preset to delete
:returns: True on success or False otherwise
"""
policy = self.policy
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sosreport/sos | sos/sosreport.py | SoSReport.version | def version(self):
"""Fetch version information from all plugins and store in the report
version file"""
versions = []
versions.append("sosreport: %s" % __version__)
for plugname, plug in self.loaded_plugins:
versions.append("%s: %s" % (plugname, plug.version))
... | python | def version(self):
"""Fetch version information from all plugins and store in the report
version file"""
versions = []
versions.append("sosreport: %s" % __version__)
for plugname, plug in self.loaded_plugins:
versions.append("%s: %s" % (plugname, plug.version))
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sosreport/sos | sos/plugins/navicli.py | Navicli.get_navicli_SP_info | def get_navicli_SP_info(self, SP_address):
""" EMC Navisphere Host Agent NAVICLI specific
information - CLARiiON - commands
"""
self.add_cmd_output([
"navicli -h %s getall" % SP_address,
"navicli -h %s getsptime -spa" % SP_address,
"navicli -h %s getsp... | python | def get_navicli_SP_info(self, SP_address):
""" EMC Navisphere Host Agent NAVICLI specific
information - CLARiiON - commands
"""
self.add_cmd_output([
"navicli -h %s getall" % SP_address,
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sosreport/sos | sos/plugins/origin.py | OpenShiftOrigin.is_static_etcd | def is_static_etcd(self):
'''Determine if we are on a node running etcd'''
return os.path.exists(os.path.join(self.static_pod_dir, "etcd.yaml")) | python | def is_static_etcd(self):
'''Determine if we are on a node running etcd'''
return os.path.exists(os.path.join(self.static_pod_dir, "etcd.yaml")) | [
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sosreport/sos | sos/plugins/networking.py | Networking.get_ip_netns | def get_ip_netns(self, ip_netns_file):
"""Returns a list for which items are namespaces in the output of
ip netns stored in the ip_netns_file.
"""
out = []
try:
ip_netns_out = open(ip_netns_file).read()
except IOError:
return out
for line i... | python | def get_ip_netns(self, ip_netns_file):
"""Returns a list for which items are namespaces in the output of
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"""
out = []
try:
ip_netns_out = open(ip_netns_file).read()
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sosreport/sos | sos/plugins/networking.py | Networking.collect_iptable | def collect_iptable(self, tablename):
""" When running the iptables command, it unfortunately auto-loads
the modules before trying to get output. Some people explicitly
don't want this, so check if the modules are loaded before running
the command. If they aren't loaded, there can't po... | python | def collect_iptable(self, tablename):
""" When running the iptables command, it unfortunately auto-loads
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sosreport/sos | sos/plugins/networking.py | Networking.collect_ip6table | def collect_ip6table(self, tablename):
""" Same as function above, but for ipv6 """
modname = "ip6table_"+tablename
if self.check_ext_prog("grep -q %s /proc/modules" % modname):
cmd = "ip6tables -t "+tablename+" -nvL"
self.add_cmd_output(cmd) | python | def collect_ip6table(self, tablename):
""" Same as function above, but for ipv6 """
modname = "ip6table_"+tablename
if self.check_ext_prog("grep -q %s /proc/modules" % modname):
cmd = "ip6tables -t "+tablename+" -nvL"
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sosreport/sos | sos/plugins/ovirt.py | Ovirt.postproc | def postproc(self):
"""
Obfuscate sensitive keys.
"""
self.do_file_sub(
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r"Password.type=(.*)",
r"Password.type=********"
)
self.do_file_sub(
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"""
Obfuscate sensitive keys.
"""
self.do_file_sub(
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r"Password.type=(.*)",
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sosreport/sos | sos/plugins/watchdog.py | Watchdog.get_log_dir | def get_log_dir(self, conf_file):
"""Get watchdog log directory.
Get watchdog log directory path configured in ``conf_file``.
:returns: The watchdog log directory path.
:returntype: str.
:raises: IOError if ``conf_file`` is not readable.
"""
log_... | python | def get_log_dir(self, conf_file):
"""Get watchdog log directory.
Get watchdog log directory path configured in ``conf_file``.
:returns: The watchdog log directory path.
:returntype: str.
:raises: IOError if ``conf_file`` is not readable.
"""
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sosreport/sos | sos/plugins/watchdog.py | Watchdog.setup | def setup(self):
"""Collect watchdog information.
Collect configuration files, custom executables for test-binary
and repair-binary, and stdout/stderr logs.
"""
conf_file = self.get_option('conf_file')
log_dir = '/var/log/watchdog'
# Get service configur... | python | def setup(self):
"""Collect watchdog information.
Collect configuration files, custom executables for test-binary
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"""
conf_file = self.get_option('conf_file')
log_dir = '/var/log/watchdog'
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sosreport/sos | sos/plugins/gluster.py | Gluster.get_volume_names | def get_volume_names(self, volume_file):
"""Return a dictionary for which key are volume names according to the
output of gluster volume info stored in volume_file.
"""
out = []
fp = open(volume_file, 'r')
for line in fp.readlines():
if not line.startswith("Vo... | python | def get_volume_names(self, volume_file):
"""Return a dictionary for which key are volume names according to the
output of gluster volume info stored in volume_file.
"""
out = []
fp = open(volume_file, 'r')
for line in fp.readlines():
if not line.startswith("Vo... | [
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sosreport/sos | sos/policies/ubuntu.py | UbuntuPolicy.dist_version | def dist_version(self):
""" Returns the version stated in DISTRIB_RELEASE
"""
try:
with open('/etc/lsb-release', 'r') as fp:
lines = fp.readlines()
for line in lines:
if "DISTRIB_RELEASE" in line:
return line... | python | def dist_version(self):
""" Returns the version stated in DISTRIB_RELEASE
"""
try:
with open('/etc/lsb-release', 'r') as fp:
lines = fp.readlines()
for line in lines:
if "DISTRIB_RELEASE" in line:
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sosreport/sos | sos/archive.py | FileCacheArchive._make_leading_paths | def _make_leading_paths(self, src, mode=0o700):
"""Create leading path components
The standard python `os.makedirs` is insufficient for our
needs: it will only create directories, and ignores the fact
that some path components may be symbolic links.
:param src: ... | python | def _make_leading_paths(self, src, mode=0o700):
"""Create leading path components
The standard python `os.makedirs` is insufficient for our
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that some path components may be symbolic links.
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sosreport/sos | sos/archive.py | FileCacheArchive._check_path | def _check_path(self, src, path_type, dest=None, force=False):
"""Check a new destination path in the archive.
Since it is possible for multiple plugins to collect the same
paths, and since plugins can now run concurrently, it is possible
for two threads to race in archive m... | python | def _check_path(self, src, path_type, dest=None, force=False):
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sosreport/sos | sos/archive.py | FileCacheArchive.makedirs | def makedirs(self, path, mode=0o700):
"""Create path, including leading components.
Used by sos.sosreport to set up sos_* directories.
"""
os.makedirs(os.path.join(self._archive_root, path), mode=mode)
self.log_debug("created directory at '%s' in FileCacheArchive '%s'"
... | python | def makedirs(self, path, mode=0o700):
"""Create path, including leading components.
Used by sos.sosreport to set up sos_* directories.
"""
os.makedirs(os.path.join(self._archive_root, path), mode=mode)
self.log_debug("created directory at '%s' in FileCacheArchive '%s'"
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sosreport/sos | sos/archive.py | FileCacheArchive._encrypt | def _encrypt(self, archive):
"""Encrypts the compressed archive using GPG.
If encryption fails for any reason, it should be logged by sos but not
cause execution to stop. The assumption is that the unencrypted archive
would still be of use to the user, and/or that the end user has anoth... | python | def _encrypt(self, archive):
"""Encrypts the compressed archive using GPG.
If encryption fails for any reason, it should be logged by sos but not
cause execution to stop. The assumption is that the unencrypted archive
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sosreport/sos | sos/utilities.py | tail | def tail(filename, number_of_bytes):
"""Returns the last number_of_bytes of filename"""
with open(filename, "rb") as f:
if os.stat(filename).st_size > number_of_bytes:
f.seek(-number_of_bytes, 2)
return f.read() | python | def tail(filename, number_of_bytes):
"""Returns the last number_of_bytes of filename"""
with open(filename, "rb") as f:
if os.stat(filename).st_size > number_of_bytes:
f.seek(-number_of_bytes, 2)
return f.read() | [
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sosreport/sos | sos/utilities.py | fileobj | def fileobj(path_or_file, mode='r'):
"""Returns a file-like object that can be used as a context manager"""
if isinstance(path_or_file, six.string_types):
try:
return open(path_or_file, mode)
except IOError:
log = logging.getLogger('sos')
log.debug("fileobj: %... | python | def fileobj(path_or_file, mode='r'):
"""Returns a file-like object that can be used as a context manager"""
if isinstance(path_or_file, six.string_types):
try:
return open(path_or_file, mode)
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sosreport/sos | sos/utilities.py | convert_bytes | def convert_bytes(bytes_, K=1 << 10, M=1 << 20, G=1 << 30, T=1 << 40):
"""Converts a number of bytes to a shorter, more human friendly format"""
fn = float(bytes_)
if bytes_ >= T:
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elif bytes_ >= G:
return '%.1fG' % (fn / G)
elif bytes_ >= M:
return '... | python | def convert_bytes(bytes_, K=1 << 10, M=1 << 20, G=1 << 30, T=1 << 40):
"""Converts a number of bytes to a shorter, more human friendly format"""
fn = float(bytes_)
if bytes_ >= T:
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sosreport/sos | sos/utilities.py | grep | def grep(pattern, *files_or_paths):
"""Returns lines matched in fnames, where fnames can either be pathnames to
files to grep through or open file objects to grep through line by line"""
matches = []
for fop in files_or_paths:
with fileobj(fop) as fo:
matches.extend((line for line i... | python | def grep(pattern, *files_or_paths):
"""Returns lines matched in fnames, where fnames can either be pathnames to
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matches = []
for fop in files_or_paths:
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sosreport/sos | sos/utilities.py | is_executable | def is_executable(command):
"""Returns if a command matches an executable on the PATH"""
paths = os.environ.get("PATH", "").split(os.path.pathsep)
candidates = [command] + [os.path.join(p, command) for p in paths]
return any(os.access(path, os.X_OK) for path in candidates) | python | def is_executable(command):
"""Returns if a command matches an executable on the PATH"""
paths = os.environ.get("PATH", "").split(os.path.pathsep)
candidates = [command] + [os.path.join(p, command) for p in paths]
return any(os.access(path, os.X_OK) for path in candidates) | [
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sosreport/sos | sos/utilities.py | sos_get_command_output | def sos_get_command_output(command, timeout=300, stderr=False,
chroot=None, chdir=None, env=None,
binary=False, sizelimit=None, poller=None):
"""Execute a command and return a dictionary of status and output,
optionally changing root or current working direc... | python | def sos_get_command_output(command, timeout=300, stderr=False,
chroot=None, chdir=None, env=None,
binary=False, sizelimit=None, poller=None):
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sosreport/sos | sos/utilities.py | import_module | def import_module(module_fqname, superclasses=None):
"""Imports the module module_fqname and returns a list of defined classes
from that module. If superclasses is defined then the classes returned will
be subclasses of the specified superclass or superclasses. If superclasses
is plural it must be a tup... | python | def import_module(module_fqname, superclasses=None):
"""Imports the module module_fqname and returns a list of defined classes
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sosreport/sos | sos/utilities.py | shell_out | def shell_out(cmd, timeout=30, chroot=None, runat=None):
"""Shell out to an external command and return the output or the empty
string in case of error.
"""
return sos_get_command_output(cmd, timeout=timeout,
chroot=chroot, chdir=runat)['output'] | python | def shell_out(cmd, timeout=30, chroot=None, runat=None):
"""Shell out to an external command and return the output or the empty
string in case of error.
"""
return sos_get_command_output(cmd, timeout=timeout,
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sosreport/sos | sos/utilities.py | AsyncReader.get_contents | def get_contents(self):
'''Returns the contents of the deque as a string'''
# block until command completes or timesout (separate from the plugin
# hitting a timeout)
while self.running:
pass
if not self.binary:
return ''.join(ln.decode('utf-8', 'ignore') ... | python | def get_contents(self):
'''Returns the contents of the deque as a string'''
# block until command completes or timesout (separate from the plugin
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while self.running:
pass
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sosreport/sos | sos/utilities.py | ImporterHelper._plugin_name | def _plugin_name(self, path):
"Returns the plugin module name given the path"
base = os.path.basename(path)
name, ext = os.path.splitext(base)
return name | python | def _plugin_name(self, path):
"Returns the plugin module name given the path"
base = os.path.basename(path)
name, ext = os.path.splitext(base)
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sosreport/sos | sos/utilities.py | ImporterHelper.get_modules | def get_modules(self):
"""Returns the list of importable modules in the configured python
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plugins = []
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sosreport/sos | sos/policies/redhat.py | RedHatPolicy.check_usrmove | def check_usrmove(self, pkgs):
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sosreport/sos | sos/policies/redhat.py | RedHatPolicy.mangle_package_path | def mangle_package_path(self, files):
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sosreport/sos | sos/policies/redhat.py | RedHatPolicy._container_init | def _container_init(self):
"""Check if sos is running in a container and perform container
specific initialisation based on ENV_HOST_SYSROOT.
"""
if ENV_CONTAINER in os.environ:
if os.environ[ENV_CONTAINER] in ['docker', 'oci']:
self._in_container = True
... | python | def _container_init(self):
"""Check if sos is running in a container and perform container
specific initialisation based on ENV_HOST_SYSROOT.
"""
if ENV_CONTAINER in os.environ:
if os.environ[ENV_CONTAINER] in ['docker', 'oci']:
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sosreport/sos | sos/policies/redhat.py | RHELPolicy.check | def check(cls):
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sosreport/sos | sos/plugins/lustre.py | Lustre.get_params | def get_params(self, name, param_list):
'''Use lctl get_param to collect a selection of parameters into a
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'''
self.add_cmd_output("lctl get_param %s" % " ".join(param_list),
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stderr=Fal... | python | def get_params(self, name, param_list):
'''Use lctl get_param to collect a selection of parameters into a
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sosreport/sos | sos/plugins/qpid_dispatch.py | QpidDispatch.setup | def setup(self):
""" performs data collection for qpid dispatch router """
options = ""
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options = (options + " -b " + gethostname() +
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# gethostname() is due to DISPATCH-156
# for ei... | python | def setup(self):
""" performs data collection for qpid dispatch router """
options = ""
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sosreport/sos | sos/plugins/__init__.py | SoSPredicate.__str | def __str(self, quote=False, prefix="", suffix=""):
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"""
quotes = '"%s"'
pstr = "dry_run=%s, " % self._dry_run
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kmods = [quotes % k for k ... | python | def __str(self, quote=False, prefix="", suffix=""):
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quotes = '"%s"'
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sosreport/sos | sos/plugins/__init__.py | Plugin.do_file_sub | def do_file_sub(self, srcpath, regexp, subst):
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sosreport/sos | sos/plugins/__init__.py | Plugin.do_path_regex_sub | def do_path_regex_sub(self, pathexp, regexp, subst):
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sosreport/sos | sos/plugins/__init__.py | Plugin._do_copy_path | def _do_copy_path(self, srcpath, dest=None):
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saved for use later in preparing a report.
'''
if self._is_forbidden_path(srcpath):
... | python | def _do_copy_path(self, srcpath, dest=None):
'''Copy file or directory to the destination tree. If a directory, then
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sosreport/sos | sos/plugins/__init__.py | Plugin.set_option | def set_option(self, optionname, value):
"""Set the named option to value. Ensure the original type
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"""
for name, parms in zip(self.opt_names, self.opt_parms):
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# FIXME: ensure that the resulting type ... | python | def set_option(self, optionname, value):
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sosreport/sos | sos/plugins/__init__.py | Plugin.get_option | def get_option(self, optionname, default=0):
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sosreport/sos | sos/plugins/__init__.py | Plugin.get_option_as_list | def get_option_as_list(self, optionname, delimiter=",", default=None):
'''Will try to return the option as a list separated by the
delimiter.
'''
option = self.get_option(optionname)
try:
opt_list = [opt.strip() for opt in option.split(delimiter)]
return l... | python | def get_option_as_list(self, optionname, delimiter=",", default=None):
'''Will try to return the option as a list separated by the
delimiter.
'''
option = self.get_option(optionname)
try:
opt_list = [opt.strip() for opt in option.split(delimiter)]
return l... | [
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sosreport/sos | sos/plugins/__init__.py | Plugin.add_copy_spec | def add_copy_spec(self, copyspecs, sizelimit=None, tailit=True, pred=None):
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a single file the file will be tailed to meet sizelimit. If the first
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""... | python | def add_copy_spec(self, copyspecs, sizelimit=None, tailit=True, pred=None):
"""Add a file or glob but limit it to sizelimit megabytes. If fname is
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sosreport/sos | sos/plugins/__init__.py | Plugin.call_ext_prog | def call_ext_prog(self, prog, timeout=300, stderr=True,
chroot=True, runat=None):
"""Execute a command independantly of the output gathering part of
sosreport.
"""
return self.get_command_output(prog, timeout=timeout, stderr=stderr,
... | python | def call_ext_prog(self, prog, timeout=300, stderr=True,
chroot=True, runat=None):
"""Execute a command independantly of the output gathering part of
sosreport.
"""
return self.get_command_output(prog, timeout=timeout, stderr=stderr,
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sosreport/sos | sos/plugins/__init__.py | Plugin._add_cmd_output | def _add_cmd_output(self, cmd, suggest_filename=None,
root_symlink=None, timeout=300, stderr=True,
chroot=True, runat=None, env=None, binary=False,
sizelimit=None, pred=None):
"""Internal helper to add a single command to the collection lis... | python | def _add_cmd_output(self, cmd, suggest_filename=None,
root_symlink=None, timeout=300, stderr=True,
chroot=True, runat=None, env=None, binary=False,
sizelimit=None, pred=None):
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sosreport/sos | sos/plugins/__init__.py | Plugin.add_cmd_output | def add_cmd_output(self, cmds, suggest_filename=None,
root_symlink=None, timeout=300, stderr=True,
chroot=True, runat=None, env=None, binary=False,
sizelimit=None, pred=None):
"""Run a program or a list of programs and collect the output"""
... | python | def add_cmd_output(self, cmds, suggest_filename=None,
root_symlink=None, timeout=300, stderr=True,
chroot=True, runat=None, env=None, binary=False,
sizelimit=None, pred=None):
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sosreport/sos | sos/plugins/__init__.py | Plugin.get_cmd_output_path | def get_cmd_output_path(self, name=None, make=True):
"""Return a path into which this module should store collected
command output
"""
cmd_output_path = os.path.join(self.archive.get_tmp_dir(),
'sos_commands', self.name())
if name:
... | python | def get_cmd_output_path(self, name=None, make=True):
"""Return a path into which this module should store collected
command output
"""
cmd_output_path = os.path.join(self.archive.get_tmp_dir(),
'sos_commands', self.name())
if name:
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sosreport/sos | sos/plugins/__init__.py | Plugin._make_command_filename | def _make_command_filename(self, exe):
"""The internal function to build up a filename based on a command."""
outfn = os.path.join(self.commons['cmddir'], self.name(),
self._mangle_command(exe))
# check for collisions
if os.path.exists(outfn):
i... | python | def _make_command_filename(self, exe):
"""The internal function to build up a filename based on a command."""
outfn = os.path.join(self.commons['cmddir'], self.name(),
self._mangle_command(exe))
# check for collisions
if os.path.exists(outfn):
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sosreport/sos | sos/plugins/__init__.py | Plugin.add_string_as_file | def add_string_as_file(self, content, filename, pred=None):
"""Add a string to the archive as a file named `filename`"""
# Generate summary string for logging
summary = content.splitlines()[0] if content else ''
if not isinstance(summary, six.string_types):
summary = content... | python | def add_string_as_file(self, content, filename, pred=None):
"""Add a string to the archive as a file named `filename`"""
# Generate summary string for logging
summary = content.splitlines()[0] if content else ''
if not isinstance(summary, six.string_types):
summary = content... | [
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sosreport/sos | sos/plugins/__init__.py | Plugin.add_journal | def add_journal(self, units=None, boot=None, since=None, until=None,
lines=None, allfields=False, output=None, timeout=None,
identifier=None, catalog=None, sizelimit=None, pred=None):
"""Collect journald logs from one of more units.
:param units: A string, or lis... | python | def add_journal(self, units=None, boot=None, since=None, until=None,
lines=None, allfields=False, output=None, timeout=None,
identifier=None, catalog=None, sizelimit=None, pred=None):
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sosreport/sos | sos/plugins/__init__.py | Plugin.add_udev_info | def add_udev_info(self, device, attrs=False):
"""Collect udevadm info output for a given device
:param device: A string or list of strings of device names or sysfs
paths. E.G. either '/sys/class/scsi_host/host0' or
'/dev/sda' is valid.
:param attrs:... | python | def add_udev_info(self, device, attrs=False):
"""Collect udevadm info output for a given device
:param device: A string or list of strings of device names or sysfs
paths. E.G. either '/sys/class/scsi_host/host0' or
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