3d-module / weights /atlas_cs15_classes.json
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{
"dataset_id": 1,
"dataset_name": "Dataset001_AtlasCS15",
"trainer": "nnUNetTrainer_250epochs",
"config": "2d",
"fold": "0",
"classes": {
"Liver": 1,
"Pancreas": 2,
"Small_intestine": 3,
"Pericardioperitoneal_canals": 4,
"Oral_cavity_and_pharynx": 5,
"Esophagus": 6,
"Stomach": 7,
"Caecum_appendix": 8,
"Colon_and_sigmoid": 9,
"Cushion_tissue": 10,
"Surrounding_mesenchyme_and_mesentery": 11,
"Skeleton": 12,
"Somites": 13,
"Outflow_tract_lumen": 14,
"Epicardium": 15
},
"atlas_specimen": "CS15-3512",
"split": {
"seed": 45,
"block_size": 4,
"test_fraction": 0.15,
"n_trainval_slices": 555,
"n_test_slices": 96
},
"holdout_test_metrics": {
"Liver": {
"mean_dice": 0.1858463674617916,
"mean_iou": 0.1258899669373631,
"n_slices": 8
},
"Pancreas": {
"mean_dice": 0.34308646395591946,
"mean_iou": 0.27470983835833246,
"n_slices": 12
},
"Small_intestine": {
"mean_dice": 0.4145717173976936,
"mean_iou": 0.299231284636282,
"n_slices": 4
},
"Pericardioperitoneal_canals": {
"mean_dice": 0.954414282730867,
"mean_iou": 0.9196545877928176,
"n_slices": 96
},
"Oral_cavity_and_pharynx": {
"mean_dice": 0.897073888976941,
"mean_iou": 0.8260587731283072,
"n_slices": 20
},
"Esophagus": {
"mean_dice": 0.8083660163061438,
"mean_iou": 0.7774567419914858,
"n_slices": 19
},
"Stomach": {
"mean_dice": 0.7899487797282029,
"mean_iou": 0.6764966761143961,
"n_slices": 22
},
"Caecum_appendix": {
"mean_dice": 0.6436903873782477,
"mean_iou": 0.5408384243447281,
"n_slices": 5
},
"Colon_and_sigmoid": {
"mean_dice": 0.7957586589834238,
"mean_iou": 0.6766929172664408,
"n_slices": 80
},
"Cushion_tissue": {
"mean_dice": 0.7534224477264507,
"mean_iou": 0.7126018832837278,
"n_slices": 20
},
"Surrounding_mesenchyme_and_mesentery": {
"mean_dice": 0.9655005353006212,
"mean_iou": 0.9335683067347463,
"n_slices": 24
},
"Skeleton": {
"mean_dice": 0.6835041750712231,
"mean_iou": 0.6312518907610637,
"n_slices": 4
},
"Somites": {
"mean_dice": 0.7317400343191647,
"mean_iou": 0.6296049809272386,
"n_slices": 8
},
"Outflow_tract_lumen": {
"mean_dice": 0.896138526560821,
"mean_iou": 0.8178772269046752,
"n_slices": 8
},
"Epicardium": {
"mean_dice": 0.756635635916873,
"mean_iou": 0.7178958989862833,
"n_slices": 10
}
}
}