Datasets:
Download examples/quickstart.py from skyleee/diversa-biomedical-v1: direct link, hf CLI and curl.
- Browser
- Download file 1.19 kB
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https://huggingface.co/datasets/skyleee/diversa-biomedical-v1/resolve/main/examples/quickstart.py
- Command line
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hf download hf://datasets/skyleee/diversa-biomedical-v1/examples/quickstart.py
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curl -L -o quickstart.py https://huggingface.co/datasets/skyleee/diversa-biomedical-v1/resolve/main/examples/quickstart.py
1.19 kB
| """Minimal, runnable example: load and analyse the dataset straight from HF. | |
| Requires: pandas, pyarrow | |
| pip install pandas pyarrow | |
| Run: | |
| python examples/quickstart.py | |
| """ | |
| import pandas as pd | |
| BASE = "hf://datasets/skyleee/diversa-biomedical-v1" | |
| def main(): | |
| works = pd.read_parquet( | |
| f"{BASE}/data/works.parquet", | |
| columns=["work_id", "publication_year", "field_name", "cited_by_count", | |
| "is_oa", "international_collaboration"], | |
| ) | |
| print(f"works: {len(works):,}") | |
| print(f"years: {works.publication_year.min()}-{works.publication_year.max()}") | |
| print(f"open access share: {works.is_oa.mean():.1%}") | |
| print(f"international collaboration rate: {works.international_collaboration.mean():.1%}") | |
| print("\nworks per field:") | |
| print(works.field_name.value_counts().head(10).to_string()) | |
| print("\nmost-cited topics (dimension table):") | |
| topics = pd.read_parquet(f"{BASE}/data/topics.parquet", | |
| columns=["topic_name", "works_count", "total_citations"]) | |
| print(topics.sort_values("total_citations", ascending=False).head(10).to_string(index=False)) | |
| if __name__ == "__main__": | |
| main() | |