Card: vendor datasheets and how to test against them
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README.md
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@@ -56,7 +56,7 @@ masks, not from radiology reports or clinical diagnoses.
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| `tables/cases.parquet` | Every scan: age, sex, institute (coded `a` to `j`), scanner, kVp, study type, pathology, voxel spacing, `eligible` and `exclusion_reason` |
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| `tables/pipeline/` | All computed measurements: four aortic diameter methods (outer wall / lumen, axial / centerline-orthogonal) on the ground-truth (`_ref`) and model (`_pred`) masks, organ volumes, Dice per structure, Merlin embeddings |
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| `cohorts/<name>/` | The SlicePoint input contract (`features`, `labels`, `predictions`, `embeddings` parquet, joined on `case_id`) for three cohorts below |
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| `vendor_datasheet/aaa-baseline-v0.json`
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| `manifest.json` | Counts and sha256 of every table |
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`case_id` is TotalSegmentator's own image id (`s0001`...), so every row traces back to
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labels = load_dataset("slicepoint/slicepoint-aaa-ct", "labels", split="site_retrospective")
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```
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Run SlicePoint on the demo pair:
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```bash
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| `tables/cases.parquet` | Every scan: age, sex, institute (coded `a` to `j`), scanner, kVp, study type, pathology, voxel spacing, `eligible` and `exclusion_reason` |
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| `tables/pipeline/` | All computed measurements: four aortic diameter methods (outer wall / lumen, axial / centerline-orthogonal) on the ground-truth (`_ref`) and model (`_pred`) masks, organ volumes, Dice per structure, Merlin embeddings |
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| `cohorts/<name>/` | The SlicePoint input contract (`features`, `labels`, `predictions`, `embeddings` parquet, joined on `case_id`) for three cohorts below |
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| `vendor_datasheet/` | Vendor datasheets (summary statistics only, in the SlicePoint `VendorDatasheet` format): `aaa-baseline-v0.json` summarises `vendor_train`, as a vendor might disclose it; `totalsegmentator-v2-train-all.json` and `totalsegmentator-v2-train-abdominal.json` describe the TotalSegmentator model's real training data (all 1,082 training scans, every body region, and the 481 of them in this dataset), computed from the source metadata |
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| `manifest.json` | Counts and sha256 of every table |
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`case_id` is TotalSegmentator's own image id (`s0001`...), so every row traces back to
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labels = load_dataset("slicepoint/slicepoint-aaa-ct", "labels", split="site_retrospective")
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```
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Test a site against a vendor datasheet (summary statistics only, no vendor rows). The two
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TotalSegmentator datasheets show why a datasheet's population matters: the abdominal
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`site_retrospective` cohort is covered by the all-regions datasheet but distributed
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differently (thinner slices there), and matches the abdominal one:
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```bash
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slicepoint datasheet check --data cohorts/site_retrospective --site-id site \
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--datasheet vendor_datasheet/totalsegmentator-v2-train-all.json --scope-broader
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slicepoint datasheet check --data cohorts/site_retrospective --site-id site \
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--datasheet vendor_datasheet/totalsegmentator-v2-train-abdominal.json
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```
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Run SlicePoint on the demo pair:
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```bash
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