Add canonical tables, cohorts, vendor datasheet and manifest
Browse files- cohorts/all/embeddings.parquet +3 -0
- cohorts/all/features.parquet +3 -0
- cohorts/all/labels.parquet +3 -0
- cohorts/all/predictions.parquet +3 -0
- cohorts/site_retrospective/embeddings.parquet +3 -0
- cohorts/site_retrospective/features.parquet +3 -0
- cohorts/site_retrospective/labels.parquet +3 -0
- cohorts/site_retrospective/predictions.parquet +3 -0
- cohorts/vendor_train/embeddings.parquet +3 -0
- cohorts/vendor_train/features.parquet +3 -0
- cohorts/vendor_train/labels.parquet +3 -0
- cohorts/vendor_train/predictions.parquet +3 -0
- manifest.json +30 -0
- tables/cases.parquet +3 -0
- tables/pipeline/embeddings.parquet +3 -0
- tables/pipeline/features.parquet +3 -0
- tables/pipeline/score.parquet +3 -0
- vendor_datasheet/aaa-baseline-v0.json +76 -0
cohorts/all/embeddings.parquet
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version https://git-lfs.github.com/spec/v1
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size 7089747
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cohorts/all/features.parquet
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version https://git-lfs.github.com/spec/v1
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size 47472
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cohorts/all/labels.parquet
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version https://git-lfs.github.com/spec/v1
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size 9293
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cohorts/all/predictions.parquet
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version https://git-lfs.github.com/spec/v1
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size 14470
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cohorts/site_retrospective/embeddings.parquet
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version https://git-lfs.github.com/spec/v1
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size 3380031
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cohorts/site_retrospective/features.parquet
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version https://git-lfs.github.com/spec/v1
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size 26122
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cohorts/site_retrospective/labels.parquet
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version https://git-lfs.github.com/spec/v1
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size 5688
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cohorts/site_retrospective/predictions.parquet
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version https://git-lfs.github.com/spec/v1
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size 7729
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cohorts/vendor_train/embeddings.parquet
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version https://git-lfs.github.com/spec/v1
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size 4607961
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cohorts/vendor_train/features.parquet
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version https://git-lfs.github.com/spec/v1
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size 33383
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cohorts/vendor_train/labels.parquet
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version https://git-lfs.github.com/spec/v1
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size 6938
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cohorts/vendor_train/predictions.parquet
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version https://git-lfs.github.com/spec/v1
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size 10068
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manifest.json
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{
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"source": "TotalSegmentator v2.0.1",
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"pool_scans": 567,
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"eligible": 555,
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"vendor_train": 333,
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"site_retrospective": 222,
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"aaa": {
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"vendor_train": 36,
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"site_retrospective": 24
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},
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"files": {
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"cohorts/all/embeddings.parquet": "895e8cf91f9fd7efa69c87c218bc543f8a0aff093d56807a7161e2c024a8f1db",
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"cohorts/all/features.parquet": "5600de2ac3f443dc127759b1f900fbc6c00c51b10aa2a7028626c79966b73484",
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"cohorts/all/labels.parquet": "0b7e9860c4964a34b7d3208b71daf62d6e0b776037e6a41652817ae757f184aa",
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"cohorts/all/predictions.parquet": "5d50541b2561c6c7885ddae9fd523a34dc159aa8228ad976a25fc736d66197c8",
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"cohorts/site_retrospective/embeddings.parquet": "d27f3b20dbc0bd7a8c8917d15a31a08b79fc7c09067f92ee3a304e05545555ff",
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"cohorts/site_retrospective/features.parquet": "898c62a5193bfacda0faf9a705c8a72e4a71d2dbc2524328d0340e195da6b8d8",
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"cohorts/site_retrospective/labels.parquet": "3acc865bb7f493a06854a2bd8e7d1624d02f73b525984c0117a65b911feb4db7",
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"cohorts/site_retrospective/predictions.parquet": "abd1de4041cdbe91d9dc85e8094a5b76653040333c496f1831002b20a99a2314",
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| 20 |
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"cohorts/vendor_train/embeddings.parquet": "fe941f7ab15cab0ca9c606834197755dc1078f3e09e83d88f51784a017a9424d",
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"cohorts/vendor_train/features.parquet": "2bd1cf452918dc13692a68ddc5ed60317fc6cb935bbf6b67bd2234ebb13dbf62",
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| 22 |
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"cohorts/vendor_train/labels.parquet": "a55b184ed1264b5584669b5b82868f2bc8feb0d4c4581c9ec4cb7498460cc2cf",
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| 23 |
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"cohorts/vendor_train/predictions.parquet": "f74ab599c29d454c812f14182d00b3756afd35069d86d32dc492b66750ce4a3d",
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| 24 |
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"tables/cases.parquet": "0681a42d6b678b4654bc655856f35dcfb9b2d0e5806a5d8aba7d0403c002d564",
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"tables/pipeline/embeddings.parquet": "619cb89c967ad84a05257bb4b32d095954f964de42cbb1772bf12491f8e3d6fc",
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"tables/pipeline/features.parquet": "a28c242ac9b3d8e2ef05e8eeea6a1c4af1abde6525c61855553ba4e81e4fd30b",
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"tables/pipeline/score.parquet": "8fd35e01873fcd0898009ce94459e0e9b83e2f1017d8049b653c78b39d18cfe1",
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| 28 |
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"vendor_datasheet/aaa-baseline-v0.json": "7ac2b5cec0115df2305dc25014889f1236fefeeedd29efb70687a114bd7b10e1"
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}
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}
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tables/cases.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:0681a42d6b678b4654bc655856f35dcfb9b2d0e5806a5d8aba7d0403c002d564
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size 59810
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tables/pipeline/embeddings.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:619cb89c967ad84a05257bb4b32d095954f964de42cbb1772bf12491f8e3d6fc
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size 7373035
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tables/pipeline/features.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:a28c242ac9b3d8e2ef05e8eeea6a1c4af1abde6525c61855553ba4e81e4fd30b
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size 187052
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tables/pipeline/score.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:8fd35e01873fcd0898009ce94459e0e9b83e2f1017d8049b653c78b39d18cfe1
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size 102402
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vendor_datasheet/aaa-baseline-v0.json
ADDED
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@@ -0,0 +1,76 @@
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{
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"schema": "slicepoint/vendor-datasheet/0-draft",
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| 3 |
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"model": {
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| 4 |
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"name": "AAA baseline v0",
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| 5 |
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"task": "abdominal aortic aneurysm detection on CT",
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| 6 |
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"rule": "infrarenal max outer-wall diameter (centerline-orthogonal) >= 30 mm on the TotalSegmentator aorta mask"
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| 7 |
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},
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| 8 |
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"training_data": {
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| 9 |
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"n_scans": 333,
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| 10 |
+
"n_patients": 333,
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| 11 |
+
"source": "TotalSegmentator v2.0.1 (University Hospital Basel), vendor_train split",
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| 12 |
+
"age_years": {
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| 13 |
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"n": 333,
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| 14 |
+
"mean": 63.45,
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| 15 |
+
"sd": 15.14,
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| 16 |
+
"median": 65.0,
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| 17 |
+
"iqr": [
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| 18 |
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54.0,
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| 19 |
+
74.0
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| 20 |
+
],
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| 21 |
+
"min": 19.0,
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| 22 |
+
"max": 98.0
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| 23 |
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},
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| 24 |
+
"sex": {
|
| 25 |
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"F": 0.4264,
|
| 26 |
+
"M": 0.5736
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| 27 |
+
},
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| 28 |
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"scanner_vendor": {
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| 29 |
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"ge": 0.045,
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| 30 |
+
"philips": 0.0871,
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| 31 |
+
"siemens": 0.8589,
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| 32 |
+
"unknown": 0.009
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| 33 |
+
},
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| 34 |
+
"contrast_phase": {
|
| 35 |
+
"arterial": 0.2162,
|
| 36 |
+
"non-contrast": 0.1862,
|
| 37 |
+
"venous": 0.5976
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| 38 |
+
},
|
| 39 |
+
"slice_thickness_class": {
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| 40 |
+
"standard": 0.3093,
|
| 41 |
+
"thick": 0.1441,
|
| 42 |
+
"thin": 0.5465
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| 43 |
+
},
|
| 44 |
+
"kvp": {
|
| 45 |
+
"n": 330,
|
| 46 |
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"mean": 114.0,
|
| 47 |
+
"sd": 13.65,
|
| 48 |
+
"median": 120.0,
|
| 49 |
+
"iqr": [
|
| 50 |
+
100.0,
|
| 51 |
+
120.0
|
| 52 |
+
],
|
| 53 |
+
"min": 80.0,
|
| 54 |
+
"max": 150.0
|
| 55 |
+
},
|
| 56 |
+
"aaa_prevalence": 0.1081,
|
| 57 |
+
"max_aortic_diameter_mm": {
|
| 58 |
+
"n": 333,
|
| 59 |
+
"mean": 23.42,
|
| 60 |
+
"sd": 8.87,
|
| 61 |
+
"median": 21.02,
|
| 62 |
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"iqr": [
|
| 63 |
+
19.21,
|
| 64 |
+
23.9
|
| 65 |
+
],
|
| 66 |
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"min": 12.5,
|
| 67 |
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"max": 72.76
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| 68 |
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}
|
| 69 |
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},
|
| 70 |
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"not_disclosed": [
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| 71 |
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"individual cases",
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| 72 |
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"joint distributions",
|
| 73 |
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"embeddings",
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| 74 |
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"protocol names"
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| 75 |
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]
|
| 76 |
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}
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