Add hospital tables, answer keys, crosswalk and dataset card
Browse files- README.md +121 -0
- crosswalk.parquet +3 -0
- hospital_a/embeddings.parquet +3 -0
- hospital_a/features.parquet +3 -0
- hospital_a/labels.parquet +3 -0
- hospital_a/predictions.parquet +3 -0
- hospital_b/embeddings.parquet +3 -0
- hospital_b/features.parquet +3 -0
- hospital_b/labels.parquet +3 -0
- hospital_b/predictions.parquet +3 -0
- hospital_c/embeddings.parquet +3 -0
- hospital_c/features.parquet +3 -0
- hospital_c/labels.parquet +3 -0
- hospital_c/predictions.parquet +3 -0
- hospital_d/embeddings.parquet +3 -0
- hospital_d/features.parquet +3 -0
- hospital_d/labels.parquet +3 -0
- hospital_d/predictions.parquet +3 -0
- hospital_e/embeddings.parquet +3 -0
- hospital_e/features.parquet +3 -0
- hospital_e/labels.parquet +3 -0
- hospital_e/predictions.parquet +3 -0
- hospital_f/embeddings.parquet +3 -0
- hospital_f/features.parquet +3 -0
- hospital_f/labels.parquet +3 -0
- hospital_f/predictions.parquet +3 -0
- hospital_g/embeddings.parquet +3 -0
- hospital_g/features.parquet +3 -0
- hospital_g/labels.parquet +3 -0
- hospital_g/predictions.parquet +3 -0
- keys/hospital_a.json +2361 -0
- keys/hospital_b.json +2069 -0
- keys/hospital_c.json +1927 -0
- keys/hospital_d.json +1914 -0
- keys/hospital_e.json +1917 -0
- keys/hospital_f.json +1921 -0
- keys/hospital_g.json +2052 -0
- keys/practice/README.md +30 -0
- keys/practice/hospital_a.json +11 -0
- keys/practice/hospital_b.json +143 -0
- keys/practice/hospital_c.json +137 -0
- keys/practice/hospital_d.json +143 -0
- keys/practice/hospital_e.json +137 -0
README.md
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---
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license: cc-by-4.0
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pretty_name: SlicePoint Hospitals
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language: [en]
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tags: [medical, ct, abdominal-aortic-aneurysm, federated-learning, non-iid, distribution-shift, dataset-shift, nifti]
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size_categories: [n<1K]
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configs:
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- config_name: features
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data_files:
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- {split: hospital_a, path: hospital_a/features.parquet}
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- {split: hospital_b, path: hospital_b/features.parquet}
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- {split: hospital_c, path: hospital_c/features.parquet}
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- {split: hospital_d, path: hospital_d/features.parquet}
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- {split: hospital_e, path: hospital_e/features.parquet}
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- {split: hospital_f, path: hospital_f/features.parquet}
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- {split: hospital_g, path: hospital_g/features.parquet}
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- config_name: labels
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data_files:
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- {split: hospital_a, path: hospital_a/labels.parquet}
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- {split: hospital_b, path: hospital_b/labels.parquet}
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- {split: hospital_c, path: hospital_c/labels.parquet}
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- {split: hospital_d, path: hospital_d/labels.parquet}
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- {split: hospital_e, path: hospital_e/labels.parquet}
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- {split: hospital_f, path: hospital_f/labels.parquet}
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- {split: hospital_g, path: hospital_g/labels.parquet}
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- config_name: predictions
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data_files:
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- {split: hospital_a, path: hospital_a/predictions.parquet}
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- {split: hospital_b, path: hospital_b/predictions.parquet}
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- {split: hospital_c, path: hospital_c/predictions.parquet}
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- {split: hospital_d, path: hospital_d/predictions.parquet}
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- {split: hospital_e, path: hospital_e/predictions.parquet}
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- {split: hospital_f, path: hospital_f/predictions.parquet}
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- {split: hospital_g, path: hospital_g/predictions.parquet}
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- config_name: embeddings
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data_files:
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- {split: hospital_a, path: hospital_a/embeddings.parquet}
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- {split: hospital_b, path: hospital_b/embeddings.parquet}
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- {split: hospital_c, path: hospital_c/embeddings.parquet}
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- {split: hospital_d, path: hospital_d/embeddings.parquet}
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- {split: hospital_e, path: hospital_e/embeddings.parquet}
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- {split: hospital_f, path: hospital_f/embeddings.parquet}
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- {split: hospital_g, path: hospital_g/embeddings.parquet}
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- config_name: crosswalk
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data_files: crosswalk.parquet
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---
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# SlicePoint Hospitals
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Seven simulated hospitals for studying dataset shift and non-IID federated learning on
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abdominal CT, with the answer keys. Each hospital is a sample of the
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[SlicePoint AAA CT](https://huggingface.co/datasets/slicepoint/slicepoint-aaa-ct) scans,
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and all but two have a problem planted on purpose: the kind of difference that makes an
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AI model behave differently at a new site. They were built for the 2026 Nucleate
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Pittsburgh hackathon, where teams had to find the problems. The game is over, so the keys
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are published.
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**Not for clinical use.** AAA labels come from a diameter rule on segmentation masks.
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## The hospitals
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| Hospital | Scans (patients) | AAA | What is different | How clearly it shows |
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|---|---|---|---|---|
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| `hospital_a` | 100 (100) | 9 | Nothing. A clean random sample; the reference the others are compared with | none |
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| `hospital_b` | 80 (40 people under 60 IDs) | 7 | Patients scanned again and again, some under new IDs; 2 patients reappear at `hospital_e` | strong (repeats), weak (cross-site) |
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| `hospital_c` | 80 (80) | 7 | Every scan thick-slice (5 mm) and venous phase: same patients, scanned differently | strong on acquisition, weak on Dice |
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| `hospital_d` | 80 (80) | 20 | Far more aneurysms, and older, more male, more arterial phase, all moving together | strong; the factors are confounded |
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| `hospital_e` | 80 (80) | 7 by its own rule | Labels measure the inside of the vessel and call AAA at 25 mm: same images, different truth | strong |
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| `hospital_f` | 80 (80) | 7 | Nothing. Tests for false alarms | none |
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| `hospital_g` | 80 (80) | 7 | The exam name gives away the answer (a shortcut), plus 2 `hospital_b` patients under new IDs | weak |
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`keys/<hospital>.json` holds the full recipe of each hospital: the planted findings
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(`waldos`: kind, severity, description, the evidence a correct finding cites), the
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targets, what was realised, and one row per case (source scan, repeat or cross-site copy,
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new patient id or not). `keys/practice/` has the reference measures given to teams for
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`hospital_a` to `hospital_e`, with the chance levels two clean samples would show.
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`crosswalk.parquet` maps every case to its scan in SlicePoint AAA CT
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(`canonical_image_id`), its true patient, and whether its image was changed:
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`hospital_c` ships 5 mm re-makes, and the repeat scans at `hospital_b` and `hospital_g`
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have added noise and a few slices dropped, so no file is a byte copy of another.
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## Layout
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| Path | What |
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|---|---|
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| `hospital_<x>/images/<case_id>.nii.gz` | CT volume (1.5 mm; `hospital_c` 1.5 x 1.5 x 5 mm) |
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| `hospital_<x>/masks/<case_id>_aorta.nii.gz` | Ground-truth aorta mask on the same grid |
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| `hospital_<x>/{features,labels,predictions,embeddings}.parquet` | The SlicePoint input contract, joined on `case_id` |
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| `keys/`, `crosswalk.parquet` | Answer keys, as above |
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Column meanings are the same as in SlicePoint AAA CT. `study_description` and
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`protocol_name` are synthetic; at `hospital_g` they carry the shortcut.
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## Download and use
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```bash
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hf download slicepoint/slicepoint-hospitals --repo-type dataset --exclude "*/images/*" "*/masks/*" # tables + keys, ~10 MB
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hf download slicepoint/slicepoint-hospitals --repo-type dataset --include "hospital_c/*" # one site with images
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```
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```bash
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slicepoint assess --data hospital_b --site-id hospital_b \
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--reference-dir hospital_a --reference-site-id hospital_a --html report.html
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```
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For federated-learning experiments, treat each `hospital_<x>` folder as one client;
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`crosswalk.parquet` tells you where clients share patients.
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## Source, license and citation
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Derived from the **TotalSegmentator dataset v2.0.1** (Wasserthal J. et al., University
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Hospital Basel, [doi:10.5281/zenodo.10047292](https://doi.org/10.5281/zenodo.10047292);
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acquisition details from v3.0.0,
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[doi:10.5281/zenodo.22688904](https://doi.org/10.5281/zenodo.22688904)), licensed
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[CC BY 4.0](https://creativecommons.org/licenses/by/4.0/). Modified by Asher Informatics
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PBC (sampled, perturbed as described above, re-identified, derived tables added) and
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released under CC BY 4.0. Segmentations by the TotalSegmentator `total` model
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(Apache-2.0). Embeddings by [Merlin](https://huggingface.co/stanfordmimi/Merlin) (MIT).
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Please cite TotalSegmentator (Radiology: AI 2023,
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[doi:10.1148/ryai.230024](https://doi.org/10.1148/ryai.230024)).
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crosswalk.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:27eb57d3d5dac9b0d2376fc95dbdfd9adff3bb2215051d763638c800b90b504a
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size 33383
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hospital_a/embeddings.parquet
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size 1551333
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hospital_a/features.parquet
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hospital_a/labels.parquet
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hospital_b/embeddings.parquet
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hospital_b/features.parquet
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hospital_b/labels.parquet
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hospital_b/predictions.parquet
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hospital_c/embeddings.parquet
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hospital_c/features.parquet
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hospital_c/labels.parquet
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hospital_c/predictions.parquet
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hospital_d/embeddings.parquet
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hospital_d/features.parquet
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hospital_d/labels.parquet
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|
| 1 |
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version https://git-lfs.github.com/spec/v1
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|
| 3 |
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size 1343644
|
hospital_e/features.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
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version https://git-lfs.github.com/spec/v1
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|
| 3 |
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size 13546
|
hospital_e/labels.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
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version https://git-lfs.github.com/spec/v1
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|
| 3 |
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size 3238
|
hospital_e/predictions.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
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version https://git-lfs.github.com/spec/v1
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|
| 3 |
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size 4180
|
hospital_f/embeddings.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
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version https://git-lfs.github.com/spec/v1
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|
| 3 |
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size 1343654
|
hospital_f/features.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
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version https://git-lfs.github.com/spec/v1
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| 2 |
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|
| 3 |
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size 13616
|
hospital_f/labels.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
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|
|
|
|
|
|
|
|
|
|
| 1 |
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version https://git-lfs.github.com/spec/v1
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|
| 3 |
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size 3445
|
hospital_f/predictions.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
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version https://git-lfs.github.com/spec/v1
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oid sha256:ebb8f3bf8d20b082d56f201d3d07bfdcbe20cac45c17483c5dacc3947ae16321
|
| 3 |
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size 4205
|
hospital_g/embeddings.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
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|
| 1 |
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version https://git-lfs.github.com/spec/v1
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|
| 3 |
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size 1343646
|
hospital_g/features.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
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|
|
|
|
|
|
|
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|
| 1 |
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version https://git-lfs.github.com/spec/v1
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|
| 3 |
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size 13751
|
hospital_g/labels.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
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|
|
|
|
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|
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|
| 1 |
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version https://git-lfs.github.com/spec/v1
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| 3 |
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size 3507
|
hospital_g/predictions.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
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|
| 1 |
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version https://git-lfs.github.com/spec/v1
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|
| 3 |
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size 4200
|
keys/hospital_a.json
ADDED
|
@@ -0,0 +1,2361 @@
|
|
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|
| 1 |
+
{
|
| 2 |
+
"recipe_id": "st_shuffle_general",
|
| 3 |
+
"display_name": "St. Shuffle General",
|
| 4 |
+
"tier": "dev",
|
| 5 |
+
"seed": 2026,
|
| 6 |
+
"source": "totalsegmentator",
|
| 7 |
+
"labels": {
|
| 8 |
+
"diameter_method": "outer_wall_orthogonal",
|
| 9 |
+
"column": "infrarenal_max_diam_outer_orth_mm_ref",
|
| 10 |
+
"aaa_threshold_mm": 30.0
|
| 11 |
+
},
|
| 12 |
+
"baseline": {
|
| 13 |
+
"method": "outer_wall_orthogonal",
|
| 14 |
+
"column": "infrarenal_max_diam_outer_orth_mm_pred",
|
| 15 |
+
"aaa_threshold_mm": 30.0
|
| 16 |
+
},
|
| 17 |
+
"sampling": {
|
| 18 |
+
"candidates": 472,
|
| 19 |
+
"band_target": {
|
| 20 |
+
"aaa": 9,
|
| 21 |
+
"ectatic": 8,
|
| 22 |
+
"normal": 83
|
| 23 |
+
},
|
| 24 |
+
"band_target_joint": {
|
| 25 |
+
"aaa": 16,
|
| 26 |
+
"ectatic": 14,
|
| 27 |
+
"normal": 150
|
| 28 |
+
},
|
| 29 |
+
"shortfall": {},
|
| 30 |
+
"objective": 0.011793785310734467,
|
| 31 |
+
"targets": {
|
| 32 |
+
"age_band": {
|
| 33 |
+
"target": {
|
| 34 |
+
"60-69": 0.23516949152542374,
|
| 35 |
+
"70-79": 0.2266949152542373,
|
| 36 |
+
"50-59": 0.211864406779661,
|
| 37 |
+
"40-49": 0.11652542372881355,
|
| 38 |
+
"80-89": 0.1016949152542373,
|
| 39 |
+
"30-39": 0.05508474576271186,
|
| 40 |
+
"20-29": 0.02754237288135593,
|
| 41 |
+
"90-99": 0.023305084745762712,
|
| 42 |
+
"10-19": 0.00211864406779661
|
| 43 |
+
},
|
| 44 |
+
"weight": 1.0
|
| 45 |
+
},
|
| 46 |
+
"sex": {
|
| 47 |
+
"target": {
|
| 48 |
+
"M": 0.5423728813559322,
|
| 49 |
+
"F": 0.4576271186440678
|
| 50 |
+
},
|
| 51 |
+
"weight": 1.0
|
| 52 |
+
},
|
| 53 |
+
"slice_thickness_class": {
|
| 54 |
+
"target": {
|
| 55 |
+
"thin": 0.5529661016949152,
|
| 56 |
+
"standard": 0.3241525423728814,
|
| 57 |
+
"thick": 0.1228813559322034
|
| 58 |
+
},
|
| 59 |
+
"weight": 0.5
|
| 60 |
+
},
|
| 61 |
+
"contrast_phase": {
|
| 62 |
+
"target": {
|
| 63 |
+
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},
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| 67 |
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| 68 |
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}
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| 69 |
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},
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| 70 |
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"note": "one stratified draw of 180 split by band across st_shuffle_general, h0_well_iid"
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| 71 |
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},
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| 72 |
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| 73 |
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{
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| 74 |
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| 76 |
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| 77 |
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"style": "site_mixed",
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| 78 |
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| 79 |
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},
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| 81 |
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| 82 |
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"style": "recipe",
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| 83 |
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| 84 |
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| 148 |
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| 151 |
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| 152 |
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| 153 |
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"description": "Stratified random sample, one scan per patient. The IID control and the reference for every other hospital.",
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| 154 |
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| 266 |
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},
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{
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},
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{
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},
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},
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{
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},
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},
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},
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| 2233 |
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| 2234 |
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|
| 2235 |
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| 2236 |
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|
| 2237 |
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|
| 2238 |
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|
| 2239 |
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"institute": "g",
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| 2240 |
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| 2241 |
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"band": "ectatic",
|
| 2242 |
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"diameter_mm": 25.059928172283335,
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| 2243 |
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| 2244 |
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| 2245 |
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|
| 2246 |
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| 2247 |
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},
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| 2248 |
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{
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| 2249 |
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|
| 2250 |
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| 2251 |
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| 2252 |
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| 2253 |
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| 2257 |
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"age": 32.0,
|
| 2258 |
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"study_type": "ct neck-thorax-abdomen-pelvis",
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| 2259 |
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| 2260 |
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| 2261 |
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| 2262 |
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| 2263 |
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"band": "normal",
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| 2264 |
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| 2265 |
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"contrast_phase": "non-contrast",
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| 2266 |
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"study_description": "CT Abdomen Pelvis without Contrast",
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| 2267 |
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| 2268 |
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| 2269 |
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},
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| 2270 |
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{
|
| 2271 |
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|
| 2272 |
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| 2273 |
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| 2274 |
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"kind": "index",
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| 2275 |
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| 2276 |
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"patient_id": "8363f7576f5b239a",
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| 2279 |
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"age": 78.0,
|
| 2280 |
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|
| 2281 |
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| 2282 |
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|
| 2283 |
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| 2290 |
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},
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| 2292 |
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| 2293 |
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| 2297 |
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| 2301 |
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"age": 72.0,
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|
| 2303 |
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| 2304 |
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|
| 2305 |
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"institute": "c",
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| 2307 |
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"band": "ectatic",
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| 2308 |
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"diameter_mm": 25.30316185775999,
|
| 2309 |
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| 2310 |
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|
| 2311 |
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|
| 2312 |
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|
| 2313 |
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},
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| 2314 |
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{
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| 2315 |
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| 2318 |
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| 2319 |
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| 2320 |
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| 2321 |
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"patient_id": "05a825053bc4b1cc",
|
| 2323 |
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"age": 74.0,
|
| 2324 |
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"study_type": "ct abdomen",
|
| 2325 |
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|
| 2326 |
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"split": "train",
|
| 2327 |
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"institute": "a",
|
| 2328 |
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"band": "normal",
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| 2330 |
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"diameter_mm": 21.639085008382402,
|
| 2331 |
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"contrast_phase": "venous",
|
| 2332 |
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"study_description": "CTA Abdominal Aorta",
|
| 2333 |
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|
| 2334 |
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"stale_until_rerun": false
|
| 2335 |
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},
|
| 2336 |
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{
|
| 2337 |
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"row_id": "s0664",
|
| 2338 |
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|
| 2339 |
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| 2340 |
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"kind": "index",
|
| 2341 |
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| 2342 |
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|
| 2343 |
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"patient_id": "93e054471edd9d17",
|
| 2345 |
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"age": 74.0,
|
| 2346 |
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"study_type": "ct thorax-abdomen",
|
| 2347 |
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"pathology": "inflammation",
|
| 2348 |
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"split": "train",
|
| 2349 |
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"institute": "i",
|
| 2350 |
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"band_reference": "normal",
|
| 2351 |
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"band": "normal",
|
| 2352 |
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"diameter_mm": 20.402205763103165,
|
| 2353 |
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"contrast_phase": "venous",
|
| 2354 |
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"study_description": "CT CAP w/ IV Contrast",
|
| 2355 |
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"rerun_knobs": "",
|
| 2356 |
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"stale_until_rerun": false
|
| 2357 |
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}
|
| 2358 |
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],
|
| 2359 |
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"public_name": "hospital_a",
|
| 2360 |
+
"release_key_fingerprint": "88dd7eeed9a0"
|
| 2361 |
+
}
|
keys/hospital_b.json
ADDED
|
@@ -0,0 +1,2069 @@
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|
|
| 1 |
+
{
|
| 2 |
+
"recipe_id": "surveillance_clinic",
|
| 3 |
+
"display_name": "Surveillance Clinic",
|
| 4 |
+
"tier": "dev",
|
| 5 |
+
"seed": 2029,
|
| 6 |
+
"source": "totalsegmentator",
|
| 7 |
+
"labels": {
|
| 8 |
+
"diameter_method": "outer_wall_orthogonal",
|
| 9 |
+
"column": "infrarenal_max_diam_outer_orth_mm_ref",
|
| 10 |
+
"aaa_threshold_mm": 30.0
|
| 11 |
+
},
|
| 12 |
+
"baseline": {
|
| 13 |
+
"method": "outer_wall_orthogonal",
|
| 14 |
+
"column": "infrarenal_max_diam_outer_orth_mm_pred",
|
| 15 |
+
"aaa_threshold_mm": 30.0
|
| 16 |
+
},
|
| 17 |
+
"sampling": {
|
| 18 |
+
"candidates": 133,
|
| 19 |
+
"cross_from": {
|
| 20 |
+
"reader_drift_hospital": {
|
| 21 |
+
"n": 2,
|
| 22 |
+
"planned": 2
|
| 23 |
+
}
|
| 24 |
+
},
|
| 25 |
+
"duplicate_plan": {
|
| 26 |
+
"n_unique": 40,
|
| 27 |
+
"unique_bands": {
|
| 28 |
+
"aaa": 3,
|
| 29 |
+
"ectatic": 3,
|
| 30 |
+
"normal": 34
|
| 31 |
+
},
|
| 32 |
+
"repeated_bands": {
|
| 33 |
+
"aaa": 2,
|
| 34 |
+
"ectatic": 2,
|
| 35 |
+
"normal": 16
|
| 36 |
+
}
|
| 37 |
+
},
|
| 38 |
+
"band_target": {
|
| 39 |
+
"aaa": 3,
|
| 40 |
+
"ectatic": 3,
|
| 41 |
+
"normal": 34
|
| 42 |
+
},
|
| 43 |
+
"shortfall": {},
|
| 44 |
+
"objective": 0.06,
|
| 45 |
+
"targets": {
|
| 46 |
+
"age_band": {
|
| 47 |
+
"target": {
|
| 48 |
+
"70-79": 0.24,
|
| 49 |
+
"60-69": 0.24,
|
| 50 |
+
"50-59": 0.21,
|
| 51 |
+
"80-89": 0.09,
|
| 52 |
+
"40-49": 0.09,
|
| 53 |
+
"30-39": 0.07,
|
| 54 |
+
"20-29": 0.04,
|
| 55 |
+
"90-99": 0.02
|
| 56 |
+
},
|
| 57 |
+
"weight": 1.0
|
| 58 |
+
},
|
| 59 |
+
"sex": {
|
| 60 |
+
"target": {
|
| 61 |
+
"M": 0.56,
|
| 62 |
+
"F": 0.44
|
| 63 |
+
},
|
| 64 |
+
"weight": 1.0
|
| 65 |
+
},
|
| 66 |
+
"contrast_phase": {
|
| 67 |
+
"target": {
|
| 68 |
+
"venous": 0.6,
|
| 69 |
+
"non-contrast": 0.26,
|
| 70 |
+
"arterial": 0.14
|
| 71 |
+
},
|
| 72 |
+
"weight": 0.5
|
| 73 |
+
},
|
| 74 |
+
"slice_thickness_class": {
|
| 75 |
+
"target": {
|
| 76 |
+
"thin": 0.55,
|
| 77 |
+
"standard": 0.34,
|
| 78 |
+
"thick": 0.11
|
| 79 |
+
},
|
| 80 |
+
"weight": 0.5
|
| 81 |
+
}
|
| 82 |
+
}
|
| 83 |
+
},
|
| 84 |
+
"knobs": [
|
| 85 |
+
{
|
| 86 |
+
"type": "protocol_vocabulary",
|
| 87 |
+
"strength": "none",
|
| 88 |
+
"params": {
|
| 89 |
+
"style": "site_mixed",
|
| 90 |
+
"vocab_dir": "recipes/vocab",
|
| 91 |
+
"p_protocol_is_orderable": 0.15
|
| 92 |
+
},
|
| 93 |
+
"param_sources": {
|
| 94 |
+
"style": "recipe",
|
| 95 |
+
"vocab_dir": "recipe",
|
| 96 |
+
"p_protocol_is_orderable": "recipe"
|
| 97 |
+
},
|
| 98 |
+
"realised": {
|
| 99 |
+
"protocol_is_orderable": 0.1625,
|
| 100 |
+
"study_type_fallback_rows": 18,
|
| 101 |
+
"distinct_study_description": 21,
|
| 102 |
+
"distinct_protocol_name": 24
|
| 103 |
+
}
|
| 104 |
+
},
|
| 105 |
+
{
|
| 106 |
+
"type": "duplicate_patients",
|
| 107 |
+
"strength": "strong",
|
| 108 |
+
"params": {
|
| 109 |
+
"fraction": 0.5,
|
| 110 |
+
"copies": 2,
|
| 111 |
+
"perturb": "small_noise_and_shift",
|
| 112 |
+
"new_ids": "partial",
|
| 113 |
+
"new_id_fraction": 0.5
|
| 114 |
+
},
|
| 115 |
+
"param_sources": {
|
| 116 |
+
"fraction": "recipe",
|
| 117 |
+
"copies": "recipe",
|
| 118 |
+
"perturb": "recipe",
|
| 119 |
+
"new_ids": "recipe",
|
| 120 |
+
"new_id_fraction": "default"
|
| 121 |
+
},
|
| 122 |
+
"realised": {
|
| 123 |
+
"unique_patients": 40,
|
| 124 |
+
"patients_repeated": 20,
|
| 125 |
+
"repeat_rows": 40,
|
| 126 |
+
"repeat_rows_new_id": 20,
|
| 127 |
+
"distinct_patient_ids": 60,
|
| 128 |
+
"perturb": "table stand-in until rerun",
|
| 129 |
+
"diameter_sd_mm": 0.5,
|
| 130 |
+
"hu_mean_sd": 3.0,
|
| 131 |
+
"hu_sd_sd": 1.0,
|
| 132 |
+
"volume_rel_sd": 0.03,
|
| 133 |
+
"dice_sd": 0.003,
|
| 134 |
+
"embed_rel_sd": 0.1
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
{
|
| 138 |
+
"type": "cross_hospital_duplicates",
|
| 139 |
+
"strength": "weak",
|
| 140 |
+
"params": {
|
| 141 |
+
"with": "reader_drift_hospital",
|
| 142 |
+
"n": 2,
|
| 143 |
+
"new_ids": true
|
| 144 |
+
},
|
| 145 |
+
"param_sources": {
|
| 146 |
+
"with": "recipe",
|
| 147 |
+
"n": "recipe",
|
| 148 |
+
"new_ids": "recipe"
|
| 149 |
+
},
|
| 150 |
+
"realised": {
|
| 151 |
+
"rows_here": 2,
|
| 152 |
+
"note": "rows are placed in whichever hospital is drawn later"
|
| 153 |
+
}
|
| 154 |
+
}
|
| 155 |
+
],
|
| 156 |
+
"realised": {
|
| 157 |
+
"n": 80,
|
| 158 |
+
"unique_patients": 40,
|
| 159 |
+
"distinct_patient_ids": 60,
|
| 160 |
+
"aaa": 7,
|
| 161 |
+
"aaa_share": 0.0875,
|
| 162 |
+
"ectatic": 7,
|
| 163 |
+
"ectatic_share": 0.0875,
|
| 164 |
+
"reference_band_aaa": 7,
|
| 165 |
+
"reference_band_ectatic": 7,
|
| 166 |
+
"age_mean": 60.525,
|
| 167 |
+
"age_60_plus": 0.55,
|
| 168 |
+
"male_share": 0.575,
|
| 169 |
+
"age_band": {
|
| 170 |
+
"20-29": 1,
|
| 171 |
+
"30-39": 5,
|
| 172 |
+
"40-49": 10,
|
| 173 |
+
"50-59": 20,
|
| 174 |
+
"60-69": 20,
|
| 175 |
+
"70-79": 14,
|
| 176 |
+
"80-89": 9,
|
| 177 |
+
"90-99": 1
|
| 178 |
+
},
|
| 179 |
+
"contrast_phase": {
|
| 180 |
+
"arterial": 16,
|
| 181 |
+
"non-contrast": 18,
|
| 182 |
+
"venous": 46
|
| 183 |
+
},
|
| 184 |
+
"scanner_vendor": {
|
| 185 |
+
"siemens": 57,
|
| 186 |
+
"philips": 16,
|
| 187 |
+
"ge": 4,
|
| 188 |
+
"nan": 3
|
| 189 |
+
},
|
| 190 |
+
"slice_thickness_class": {
|
| 191 |
+
"standard": 38,
|
| 192 |
+
"thick": 6,
|
| 193 |
+
"thin": 36
|
| 194 |
+
},
|
| 195 |
+
"mean_dice": 0.9700810098462866,
|
| 196 |
+
"stale_rows": 42
|
| 197 |
+
},
|
| 198 |
+
"match_required": true,
|
| 199 |
+
"match_vs_reference": {
|
| 200 |
+
"aaa_rel": 0.027777777777777804,
|
| 201 |
+
"male_rel": 0.026785714285714107,
|
| 202 |
+
"age60_rel": 0.0677966101694914,
|
| 203 |
+
"age_band_tv": 0.10750000000000001,
|
| 204 |
+
"phase_tv": 0.06000000000000001,
|
| 205 |
+
"ok": true
|
| 206 |
+
},
|
| 207 |
+
"release": {
|
| 208 |
+
"withhold_columns": [],
|
| 209 |
+
"patient_id": "rehash_partial"
|
| 210 |
+
},
|
| 211 |
+
"waldos": [
|
| 212 |
+
{
|
| 213 |
+
"kind": "clustering",
|
| 214 |
+
"severity": "strong",
|
| 215 |
+
"description": "Many patients scanned repeatedly, some under fresh IDs. Looks like 80 cases; holds far fewer independent ones.",
|
| 216 |
+
"evidence_expected": "Near-duplicate embeddings within the hospital, ICC and design effect, n_eff well below n, naive CIs too narrow."
|
| 217 |
+
},
|
| 218 |
+
{
|
| 219 |
+
"kind": "clustering",
|
| 220 |
+
"severity": "weak",
|
| 221 |
+
"description": "A handful of patients also appear at the Reader Drift Hospital under new IDs.",
|
| 222 |
+
"evidence_expected": "Cross-hospital near-duplicate pairs; a hospital-level split would leak."
|
| 223 |
+
}
|
| 224 |
+
],
|
| 225 |
+
"cases": [
|
| 226 |
+
{
|
| 227 |
+
"row_id": "s0462_r1",
|
| 228 |
+
"image_id": "s0462",
|
| 229 |
+
"patient_key": "s0462",
|
| 230 |
+
"kind": "repeat",
|
| 231 |
+
"copy": 1,
|
| 232 |
+
"new_patient_id": true,
|
| 233 |
+
"from": null,
|
| 234 |
+
"case_id": "78caa829771bed16",
|
| 235 |
+
"patient_id": "4742b08ffeab0d06",
|
| 236 |
+
"age": 80.0,
|
| 237 |
+
"study_type": "ct spine",
|
| 238 |
+
"pathology": "trauma",
|
| 239 |
+
"split": "train",
|
| 240 |
+
"institute": "i",
|
| 241 |
+
"band_reference": "ectatic",
|
| 242 |
+
"band": "ectatic",
|
| 243 |
+
"diameter_mm": 26.04562647044538,
|
| 244 |
+
"contrast_phase": "arterial",
|
| 245 |
+
"study_description": "CT Abdomen Pelvis with Contrast",
|
| 246 |
+
"rerun_knobs": "duplicate_scan_perturb",
|
| 247 |
+
"stale_until_rerun": true
|
| 248 |
+
},
|
| 249 |
+
{
|
| 250 |
+
"row_id": "s1109",
|
| 251 |
+
"image_id": "s1109",
|
| 252 |
+
"patient_key": "s1109",
|
| 253 |
+
"kind": "index",
|
| 254 |
+
"copy": 0,
|
| 255 |
+
"new_patient_id": false,
|
| 256 |
+
"from": null,
|
| 257 |
+
"case_id": "25e62e0721874450",
|
| 258 |
+
"patient_id": "c03860083e2d2026",
|
| 259 |
+
"age": 72.0,
|
| 260 |
+
"study_type": "ct intervention",
|
| 261 |
+
"pathology": "tumor",
|
| 262 |
+
"split": "train",
|
| 263 |
+
"institute": "i",
|
| 264 |
+
"band_reference": "normal",
|
| 265 |
+
"band": "normal",
|
| 266 |
+
"diameter_mm": 19.912307751739878,
|
| 267 |
+
"contrast_phase": "non-contrast",
|
| 268 |
+
"study_description": "CT Abd/Pel w/o",
|
| 269 |
+
"rerun_knobs": "",
|
| 270 |
+
"stale_until_rerun": false
|
| 271 |
+
},
|
| 272 |
+
{
|
| 273 |
+
"row_id": "s0119",
|
| 274 |
+
"image_id": "s0119",
|
| 275 |
+
"patient_key": "s0119",
|
| 276 |
+
"kind": "index",
|
| 277 |
+
"copy": 0,
|
| 278 |
+
"new_patient_id": false,
|
| 279 |
+
"from": null,
|
| 280 |
+
"case_id": "f87fe811ef687707",
|
| 281 |
+
"patient_id": "478b42fa9e4aa877",
|
| 282 |
+
"age": 43.0,
|
| 283 |
+
"study_type": "ct abdomen-pelvis",
|
| 284 |
+
"pathology": "no_pathology",
|
| 285 |
+
"split": "test",
|
| 286 |
+
"institute": "i",
|
| 287 |
+
"band_reference": "normal",
|
| 288 |
+
"band": "normal",
|
| 289 |
+
"diameter_mm": 20.838665984174707,
|
| 290 |
+
"contrast_phase": "venous",
|
| 291 |
+
"study_description": "CT Abdomen Pelvis with Contrast",
|
| 292 |
+
"rerun_knobs": "",
|
| 293 |
+
"stale_until_rerun": false
|
| 294 |
+
},
|
| 295 |
+
{
|
| 296 |
+
"row_id": "s0253_r2",
|
| 297 |
+
"image_id": "s0253",
|
| 298 |
+
"patient_key": "s0253",
|
| 299 |
+
"kind": "repeat",
|
| 300 |
+
"copy": 2,
|
| 301 |
+
"new_patient_id": false,
|
| 302 |
+
"from": null,
|
| 303 |
+
"case_id": "8b79f83e90ed1cb2",
|
| 304 |
+
"patient_id": "181f55ce336d4b78",
|
| 305 |
+
"age": 60.0,
|
| 306 |
+
"study_type": "ct thorax-chest",
|
| 307 |
+
"pathology": "other",
|
| 308 |
+
"split": "train",
|
| 309 |
+
"institute": "i",
|
| 310 |
+
"band_reference": "normal",
|
| 311 |
+
"band": "normal",
|
| 312 |
+
"diameter_mm": 20.12764891036125,
|
| 313 |
+
"contrast_phase": "non-contrast",
|
| 314 |
+
"study_description": "CT Abdomen Pelvis without Contrast",
|
| 315 |
+
"rerun_knobs": "duplicate_scan_perturb",
|
| 316 |
+
"stale_until_rerun": true
|
| 317 |
+
},
|
| 318 |
+
{
|
| 319 |
+
"row_id": "s0553",
|
| 320 |
+
"image_id": "s0553",
|
| 321 |
+
"patient_key": "s0553",
|
| 322 |
+
"kind": "index",
|
| 323 |
+
"copy": 0,
|
| 324 |
+
"new_patient_id": false,
|
| 325 |
+
"from": null,
|
| 326 |
+
"case_id": "c59c4263ebf771cf",
|
| 327 |
+
"patient_id": "3f88d0f4e3a351ec",
|
| 328 |
+
"age": 45.0,
|
| 329 |
+
"study_type": "ct thorax-abdomen",
|
| 330 |
+
"pathology": "unclear",
|
| 331 |
+
"split": "train",
|
| 332 |
+
"institute": "e",
|
| 333 |
+
"band_reference": "normal",
|
| 334 |
+
"band": "normal",
|
| 335 |
+
"diameter_mm": 17.392527130926087,
|
| 336 |
+
"contrast_phase": "venous",
|
| 337 |
+
"study_description": "CT Chest Abdomen Pelvis with Contrast",
|
| 338 |
+
"rerun_knobs": "",
|
| 339 |
+
"stale_until_rerun": false
|
| 340 |
+
},
|
| 341 |
+
{
|
| 342 |
+
"row_id": "s0053_r1",
|
| 343 |
+
"image_id": "s0053",
|
| 344 |
+
"patient_key": "s0053",
|
| 345 |
+
"kind": "repeat",
|
| 346 |
+
"copy": 1,
|
| 347 |
+
"new_patient_id": true,
|
| 348 |
+
"from": null,
|
| 349 |
+
"case_id": "f2c1f9be16fb69c0",
|
| 350 |
+
"patient_id": "696efdf26aee4a45",
|
| 351 |
+
"age": 30.0,
|
| 352 |
+
"study_type": "ct abdomen-pelvis",
|
| 353 |
+
"pathology": "inflammation",
|
| 354 |
+
"split": "train",
|
| 355 |
+
"institute": "i",
|
| 356 |
+
"band_reference": "normal",
|
| 357 |
+
"band": "normal",
|
| 358 |
+
"diameter_mm": 22.893945340963537,
|
| 359 |
+
"contrast_phase": "venous",
|
| 360 |
+
"study_description": "CTA Abdomen/Pelvis",
|
| 361 |
+
"rerun_knobs": "duplicate_scan_perturb",
|
| 362 |
+
"stale_until_rerun": true
|
| 363 |
+
},
|
| 364 |
+
{
|
| 365 |
+
"row_id": "s1339",
|
| 366 |
+
"image_id": "s1339",
|
| 367 |
+
"patient_key": "s1339",
|
| 368 |
+
"kind": "index",
|
| 369 |
+
"copy": 0,
|
| 370 |
+
"new_patient_id": false,
|
| 371 |
+
"from": null,
|
| 372 |
+
"case_id": "5c638186d390f906",
|
| 373 |
+
"patient_id": "d056ad051efed209",
|
| 374 |
+
"age": 55.0,
|
| 375 |
+
"study_type": "ct abdomen",
|
| 376 |
+
"pathology": "unclear",
|
| 377 |
+
"split": "train",
|
| 378 |
+
"institute": "f",
|
| 379 |
+
"band_reference": "normal",
|
| 380 |
+
"band": "normal",
|
| 381 |
+
"diameter_mm": 17.67766952966369,
|
| 382 |
+
"contrast_phase": "venous",
|
| 383 |
+
"study_description": "CTA Abdominal Aorta",
|
| 384 |
+
"rerun_knobs": "",
|
| 385 |
+
"stale_until_rerun": false
|
| 386 |
+
},
|
| 387 |
+
{
|
| 388 |
+
"row_id": "s0899",
|
| 389 |
+
"image_id": "s0899",
|
| 390 |
+
"patient_key": "s0899",
|
| 391 |
+
"kind": "index",
|
| 392 |
+
"copy": 0,
|
| 393 |
+
"new_patient_id": false,
|
| 394 |
+
"from": null,
|
| 395 |
+
"case_id": "61680da474f4fa9f",
|
| 396 |
+
"patient_id": "86edc9eac262b0cd",
|
| 397 |
+
"age": 74.0,
|
| 398 |
+
"study_type": "ct thorax-abdomen-pelvis",
|
| 399 |
+
"pathology": "inflammation",
|
| 400 |
+
"split": "train",
|
| 401 |
+
"institute": "i",
|
| 402 |
+
"band_reference": "normal",
|
| 403 |
+
"band": "normal",
|
| 404 |
+
"diameter_mm": 21.840329667841555,
|
| 405 |
+
"contrast_phase": "venous",
|
| 406 |
+
"study_description": "CT CAP w/ IV Contrast",
|
| 407 |
+
"rerun_knobs": "",
|
| 408 |
+
"stale_until_rerun": false
|
| 409 |
+
},
|
| 410 |
+
{
|
| 411 |
+
"row_id": "s1102",
|
| 412 |
+
"image_id": "s1102",
|
| 413 |
+
"patient_key": "s1102",
|
| 414 |
+
"kind": "index",
|
| 415 |
+
"copy": 0,
|
| 416 |
+
"new_patient_id": false,
|
| 417 |
+
"from": null,
|
| 418 |
+
"case_id": "49c403a341e1b66d",
|
| 419 |
+
"patient_id": "52ae3c798bd1c233",
|
| 420 |
+
"age": 22.0,
|
| 421 |
+
"study_type": "ct thorax-chest",
|
| 422 |
+
"pathology": "other",
|
| 423 |
+
"split": "train",
|
| 424 |
+
"institute": "i",
|
| 425 |
+
"band_reference": "normal",
|
| 426 |
+
"band": "normal",
|
| 427 |
+
"diameter_mm": 18.200274723201296,
|
| 428 |
+
"contrast_phase": "non-contrast",
|
| 429 |
+
"study_description": "CT Abdomen Pelvis without Contrast",
|
| 430 |
+
"rerun_knobs": "",
|
| 431 |
+
"stale_until_rerun": false
|
| 432 |
+
},
|
| 433 |
+
{
|
| 434 |
+
"row_id": "s0216",
|
| 435 |
+
"image_id": "s0216",
|
| 436 |
+
"patient_key": "s0216",
|
| 437 |
+
"kind": "index",
|
| 438 |
+
"copy": 0,
|
| 439 |
+
"new_patient_id": false,
|
| 440 |
+
"from": null,
|
| 441 |
+
"case_id": "fc128d92ecfd2729",
|
| 442 |
+
"patient_id": "47c9284d0c321b91",
|
| 443 |
+
"age": 38.0,
|
| 444 |
+
"study_type": "ct angiography abdomen-pelvis-leg",
|
| 445 |
+
"pathology": "no_pathology",
|
| 446 |
+
"split": "val",
|
| 447 |
+
"institute": "i",
|
| 448 |
+
"band_reference": "normal",
|
| 449 |
+
"band": "normal",
|
| 450 |
+
"diameter_mm": 14.317821063276353,
|
| 451 |
+
"contrast_phase": "arterial",
|
| 452 |
+
"study_description": "CTA Runoff",
|
| 453 |
+
"rerun_knobs": "",
|
| 454 |
+
"stale_until_rerun": false
|
| 455 |
+
},
|
| 456 |
+
{
|
| 457 |
+
"row_id": "s0117",
|
| 458 |
+
"image_id": "s0117",
|
| 459 |
+
"patient_key": "s0117",
|
| 460 |
+
"kind": "index",
|
| 461 |
+
"copy": 0,
|
| 462 |
+
"new_patient_id": false,
|
| 463 |
+
"from": null,
|
| 464 |
+
"case_id": "8d53855b383a3cb4",
|
| 465 |
+
"patient_id": "8bbb9940a2f4f18f",
|
| 466 |
+
"age": 50.0,
|
| 467 |
+
"study_type": "ct abdomen-pelvis",
|
| 468 |
+
"pathology": "other",
|
| 469 |
+
"split": "train",
|
| 470 |
+
"institute": "i",
|
| 471 |
+
"band_reference": "normal",
|
| 472 |
+
"band": "normal",
|
| 473 |
+
"diameter_mm": 21.47673159491453,
|
| 474 |
+
"contrast_phase": "non-contrast",
|
| 475 |
+
"study_description": "CT Abd/Pel w/o",
|
| 476 |
+
"rerun_knobs": "",
|
| 477 |
+
"stale_until_rerun": false
|
| 478 |
+
},
|
| 479 |
+
{
|
| 480 |
+
"row_id": "s1249",
|
| 481 |
+
"image_id": "s1249",
|
| 482 |
+
"patient_key": "s1249",
|
| 483 |
+
"kind": "index",
|
| 484 |
+
"copy": 0,
|
| 485 |
+
"new_patient_id": false,
|
| 486 |
+
"from": null,
|
| 487 |
+
"case_id": "36c6a1458f4a3c58",
|
| 488 |
+
"patient_id": "e1b0976d2d928091",
|
| 489 |
+
"age": 94.0,
|
| 490 |
+
"study_type": "ct polytrauma",
|
| 491 |
+
"pathology": "bleeding",
|
| 492 |
+
"split": "test",
|
| 493 |
+
"institute": "i",
|
| 494 |
+
"band_reference": "normal",
|
| 495 |
+
"band": "normal",
|
| 496 |
+
"diameter_mm": 19.6596032513375,
|
| 497 |
+
"contrast_phase": "venous",
|
| 498 |
+
"study_description": "CT Polytrauma Whole Body",
|
| 499 |
+
"rerun_knobs": "",
|
| 500 |
+
"stale_until_rerun": false
|
| 501 |
+
},
|
| 502 |
+
{
|
| 503 |
+
"row_id": "s0189_r1",
|
| 504 |
+
"image_id": "s0189",
|
| 505 |
+
"patient_key": "s0189",
|
| 506 |
+
"kind": "repeat",
|
| 507 |
+
"copy": 1,
|
| 508 |
+
"new_patient_id": false,
|
| 509 |
+
"from": null,
|
| 510 |
+
"case_id": "87e01d6c28e4733c",
|
| 511 |
+
"patient_id": "2892c47d7a0f1600",
|
| 512 |
+
"age": 50.0,
|
| 513 |
+
"study_type": "ct aortic valve",
|
| 514 |
+
"pathology": "vascular",
|
| 515 |
+
"split": "train",
|
| 516 |
+
"institute": "i",
|
| 517 |
+
"band_reference": "normal",
|
| 518 |
+
"band": "normal",
|
| 519 |
+
"diameter_mm": 24.752176144540194,
|
| 520 |
+
"contrast_phase": "arterial",
|
| 521 |
+
"study_description": "CTA TAVR Planning Chest/Abd/Pelvis",
|
| 522 |
+
"rerun_knobs": "duplicate_scan_perturb",
|
| 523 |
+
"stale_until_rerun": true
|
| 524 |
+
},
|
| 525 |
+
{
|
| 526 |
+
"row_id": "s1149",
|
| 527 |
+
"image_id": "s1149",
|
| 528 |
+
"patient_key": "s1149",
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| 1956 |
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"copy": 1,
|
| 1957 |
+
"new_patient_id": false,
|
| 1958 |
+
"from": null,
|
| 1959 |
+
"case_id": "5efb1c88edcdd5df",
|
| 1960 |
+
"patient_id": "478b42fa9e4aa877",
|
| 1961 |
+
"age": 43.0,
|
| 1962 |
+
"study_type": "ct abdomen-pelvis",
|
| 1963 |
+
"pathology": "no_pathology",
|
| 1964 |
+
"split": "test",
|
| 1965 |
+
"institute": "i",
|
| 1966 |
+
"band_reference": "normal",
|
| 1967 |
+
"band": "normal",
|
| 1968 |
+
"diameter_mm": 20.955899543324062,
|
| 1969 |
+
"contrast_phase": "venous",
|
| 1970 |
+
"study_description": "CTA Abdomen/Pelvis",
|
| 1971 |
+
"rerun_knobs": "duplicate_scan_perturb",
|
| 1972 |
+
"stale_until_rerun": true
|
| 1973 |
+
},
|
| 1974 |
+
{
|
| 1975 |
+
"row_id": "s0677_r2",
|
| 1976 |
+
"image_id": "s0677",
|
| 1977 |
+
"patient_key": "s0677",
|
| 1978 |
+
"kind": "repeat",
|
| 1979 |
+
"copy": 2,
|
| 1980 |
+
"new_patient_id": false,
|
| 1981 |
+
"from": null,
|
| 1982 |
+
"case_id": "ff72eb0c120c9c2f",
|
| 1983 |
+
"patient_id": "24fd6db83417c60e",
|
| 1984 |
+
"age": 56.0,
|
| 1985 |
+
"study_type": "ct chest",
|
| 1986 |
+
"pathology": "no_pathology",
|
| 1987 |
+
"split": "train",
|
| 1988 |
+
"institute": "i",
|
| 1989 |
+
"band_reference": "normal",
|
| 1990 |
+
"band": "normal",
|
| 1991 |
+
"diameter_mm": 21.022218714230338,
|
| 1992 |
+
"contrast_phase": "arterial",
|
| 1993 |
+
"study_description": "CT Abdomen Pelvis with Contrast",
|
| 1994 |
+
"rerun_knobs": "duplicate_scan_perturb",
|
| 1995 |
+
"stale_until_rerun": true
|
| 1996 |
+
},
|
| 1997 |
+
{
|
| 1998 |
+
"row_id": "s0313",
|
| 1999 |
+
"image_id": "s0313",
|
| 2000 |
+
"patient_key": "s0313",
|
| 2001 |
+
"kind": "index",
|
| 2002 |
+
"copy": 0,
|
| 2003 |
+
"new_patient_id": false,
|
| 2004 |
+
"from": null,
|
| 2005 |
+
"case_id": "cb495f026d3f91da",
|
| 2006 |
+
"patient_id": "08696e0a4324a515",
|
| 2007 |
+
"age": 73.0,
|
| 2008 |
+
"study_type": "ct spine",
|
| 2009 |
+
"pathology": "other",
|
| 2010 |
+
"split": "train",
|
| 2011 |
+
"institute": "i",
|
| 2012 |
+
"band_reference": "normal",
|
| 2013 |
+
"band": "normal",
|
| 2014 |
+
"diameter_mm": 20.838665984174707,
|
| 2015 |
+
"contrast_phase": "non-contrast",
|
| 2016 |
+
"study_description": "CT Abd/Pel w/o",
|
| 2017 |
+
"rerun_knobs": "",
|
| 2018 |
+
"stale_until_rerun": false
|
| 2019 |
+
},
|
| 2020 |
+
{
|
| 2021 |
+
"row_id": "s0383",
|
| 2022 |
+
"image_id": "s0383",
|
| 2023 |
+
"patient_key": "s0383",
|
| 2024 |
+
"kind": "index",
|
| 2025 |
+
"copy": 0,
|
| 2026 |
+
"new_patient_id": false,
|
| 2027 |
+
"from": null,
|
| 2028 |
+
"case_id": "615e3ec434cf544b",
|
| 2029 |
+
"patient_id": "175df7e7d29ba8b4",
|
| 2030 |
+
"age": 80.0,
|
| 2031 |
+
"study_type": "ct thorax-abdomen-pelvis",
|
| 2032 |
+
"pathology": "tumor",
|
| 2033 |
+
"split": "train",
|
| 2034 |
+
"institute": "c",
|
| 2035 |
+
"band_reference": "normal",
|
| 2036 |
+
"band": "normal",
|
| 2037 |
+
"diameter_mm": 19.924858845171276,
|
| 2038 |
+
"contrast_phase": "venous",
|
| 2039 |
+
"study_description": "CT Chest Abdomen Pelvis with Contrast",
|
| 2040 |
+
"rerun_knobs": "",
|
| 2041 |
+
"stale_until_rerun": false
|
| 2042 |
+
},
|
| 2043 |
+
{
|
| 2044 |
+
"row_id": "s0383_r1",
|
| 2045 |
+
"image_id": "s0383",
|
| 2046 |
+
"patient_key": "s0383",
|
| 2047 |
+
"kind": "repeat",
|
| 2048 |
+
"copy": 1,
|
| 2049 |
+
"new_patient_id": false,
|
| 2050 |
+
"from": null,
|
| 2051 |
+
"case_id": "ca6c117f29a70bab",
|
| 2052 |
+
"patient_id": "175df7e7d29ba8b4",
|
| 2053 |
+
"age": 80.0,
|
| 2054 |
+
"study_type": "ct thorax-abdomen-pelvis",
|
| 2055 |
+
"pathology": "tumor",
|
| 2056 |
+
"split": "train",
|
| 2057 |
+
"institute": "c",
|
| 2058 |
+
"band_reference": "normal",
|
| 2059 |
+
"band": "normal",
|
| 2060 |
+
"diameter_mm": 20.589249220546,
|
| 2061 |
+
"contrast_phase": "venous",
|
| 2062 |
+
"study_description": "CT CAP w/ IV Contrast",
|
| 2063 |
+
"rerun_knobs": "duplicate_scan_perturb",
|
| 2064 |
+
"stale_until_rerun": true
|
| 2065 |
+
}
|
| 2066 |
+
],
|
| 2067 |
+
"public_name": "hospital_b",
|
| 2068 |
+
"release_key_fingerprint": "88dd7eeed9a0"
|
| 2069 |
+
}
|
keys/hospital_c.json
ADDED
|
@@ -0,0 +1,1927 @@
|
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|
|
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|
|
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|
|
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|
|
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|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"recipe_id": "community_hospital",
|
| 3 |
+
"display_name": "Community Hospital",
|
| 4 |
+
"tier": "dev",
|
| 5 |
+
"seed": 2027,
|
| 6 |
+
"source": "totalsegmentator",
|
| 7 |
+
"labels": {
|
| 8 |
+
"diameter_method": "outer_wall_orthogonal",
|
| 9 |
+
"column": "infrarenal_max_diam_outer_orth_mm_ref",
|
| 10 |
+
"aaa_threshold_mm": 30.0
|
| 11 |
+
},
|
| 12 |
+
"baseline": {
|
| 13 |
+
"method": "outer_wall_orthogonal",
|
| 14 |
+
"column": "infrarenal_max_diam_outer_orth_mm_pred",
|
| 15 |
+
"aaa_threshold_mm": 30.0
|
| 16 |
+
},
|
| 17 |
+
"sampling": {
|
| 18 |
+
"candidates": 162,
|
| 19 |
+
"band_target": {
|
| 20 |
+
"aaa": 7,
|
| 21 |
+
"ectatic": 6,
|
| 22 |
+
"normal": 67
|
| 23 |
+
},
|
| 24 |
+
"shortfall": {},
|
| 25 |
+
"objective": 0.014999999999999977,
|
| 26 |
+
"targets": {
|
| 27 |
+
"age_band": {
|
| 28 |
+
"target": {
|
| 29 |
+
"70-79": 0.24,
|
| 30 |
+
"60-69": 0.24,
|
| 31 |
+
"50-59": 0.21,
|
| 32 |
+
"80-89": 0.09,
|
| 33 |
+
"40-49": 0.09,
|
| 34 |
+
"30-39": 0.07,
|
| 35 |
+
"20-29": 0.04,
|
| 36 |
+
"90-99": 0.02
|
| 37 |
+
},
|
| 38 |
+
"weight": 1.0
|
| 39 |
+
},
|
| 40 |
+
"sex": {
|
| 41 |
+
"target": {
|
| 42 |
+
"M": 0.56,
|
| 43 |
+
"F": 0.44
|
| 44 |
+
},
|
| 45 |
+
"weight": 1.0
|
| 46 |
+
}
|
| 47 |
+
}
|
| 48 |
+
},
|
| 49 |
+
"knobs": [
|
| 50 |
+
{
|
| 51 |
+
"type": "protocol_vocabulary",
|
| 52 |
+
"strength": "none",
|
| 53 |
+
"params": {
|
| 54 |
+
"style": "site_mixed",
|
| 55 |
+
"vocab_dir": "recipes/vocab",
|
| 56 |
+
"p_protocol_is_orderable": 0.15
|
| 57 |
+
},
|
| 58 |
+
"param_sources": {
|
| 59 |
+
"style": "recipe",
|
| 60 |
+
"vocab_dir": "recipe",
|
| 61 |
+
"p_protocol_is_orderable": "recipe"
|
| 62 |
+
},
|
| 63 |
+
"realised": {
|
| 64 |
+
"protocol_is_orderable": 0.1375,
|
| 65 |
+
"study_type_fallback_rows": 2,
|
| 66 |
+
"distinct_study_description": 14,
|
| 67 |
+
"distinct_protocol_name": 18
|
| 68 |
+
}
|
| 69 |
+
},
|
| 70 |
+
{
|
| 71 |
+
"type": "resample_slice_thickness",
|
| 72 |
+
"strength": "strong",
|
| 73 |
+
"params": {
|
| 74 |
+
"target_mm": 5.0,
|
| 75 |
+
"fraction": 1.0
|
| 76 |
+
},
|
| 77 |
+
"param_sources": {
|
| 78 |
+
"target_mm": "recipe",
|
| 79 |
+
"fraction": "recipe"
|
| 80 |
+
},
|
| 81 |
+
"realised": {
|
| 82 |
+
"rows_resampled": 69,
|
| 83 |
+
"rows_already_at_or_above": 11,
|
| 84 |
+
"rows_image_rerun": 69,
|
| 85 |
+
"knob_value": "target_mm=5",
|
| 86 |
+
"table_values": "slice_thickness_mm and class set to target; rerun rows take aorta HU, organ volumes, predicted diameter, Dice and embedding from the thick-slice image; the rest are pre-knob until rerun"
|
| 87 |
+
}
|
| 88 |
+
},
|
| 89 |
+
{
|
| 90 |
+
"type": "contrast_phase_filter",
|
| 91 |
+
"strength": "strong",
|
| 92 |
+
"params": {
|
| 93 |
+
"keep": [
|
| 94 |
+
"venous"
|
| 95 |
+
]
|
| 96 |
+
},
|
| 97 |
+
"param_sources": {
|
| 98 |
+
"keep": "recipe"
|
| 99 |
+
},
|
| 100 |
+
"realised": {
|
| 101 |
+
"applied_in": "sampling"
|
| 102 |
+
}
|
| 103 |
+
}
|
| 104 |
+
],
|
| 105 |
+
"realised": {
|
| 106 |
+
"n": 80,
|
| 107 |
+
"unique_patients": 80,
|
| 108 |
+
"distinct_patient_ids": 80,
|
| 109 |
+
"aaa": 7,
|
| 110 |
+
"aaa_share": 0.0875,
|
| 111 |
+
"ectatic": 6,
|
| 112 |
+
"ectatic_share": 0.075,
|
| 113 |
+
"reference_band_aaa": 7,
|
| 114 |
+
"reference_band_ectatic": 6,
|
| 115 |
+
"age_mean": 61.5,
|
| 116 |
+
"age_60_plus": 0.5875,
|
| 117 |
+
"male_share": 0.5625,
|
| 118 |
+
"age_band": {
|
| 119 |
+
"20-29": 3,
|
| 120 |
+
"30-39": 6,
|
| 121 |
+
"40-49": 7,
|
| 122 |
+
"50-59": 17,
|
| 123 |
+
"60-69": 19,
|
| 124 |
+
"70-79": 19,
|
| 125 |
+
"80-89": 7,
|
| 126 |
+
"90-99": 2
|
| 127 |
+
},
|
| 128 |
+
"contrast_phase": {
|
| 129 |
+
"venous": 80
|
| 130 |
+
},
|
| 131 |
+
"scanner_vendor": {
|
| 132 |
+
"siemens": 73,
|
| 133 |
+
"philips": 5,
|
| 134 |
+
"ge": 2
|
| 135 |
+
},
|
| 136 |
+
"slice_thickness_class": {
|
| 137 |
+
"thick": 80
|
| 138 |
+
},
|
| 139 |
+
"mean_dice": 0.9607357705407406,
|
| 140 |
+
"stale_rows": 0
|
| 141 |
+
},
|
| 142 |
+
"match_required": true,
|
| 143 |
+
"match_vs_reference": {
|
| 144 |
+
"aaa_rel": 0.027777777777777804,
|
| 145 |
+
"male_rel": 0.004464285714285619,
|
| 146 |
+
"age60_rel": 0.00423728813559313,
|
| 147 |
+
"age_band_tv": 0.012500000000000002,
|
| 148 |
+
"phase_tv": 0.4,
|
| 149 |
+
"ok": true
|
| 150 |
+
},
|
| 151 |
+
"release": {
|
| 152 |
+
"withhold_columns": [],
|
| 153 |
+
"patient_id": "keep"
|
| 154 |
+
},
|
| 155 |
+
"waldos": [
|
| 156 |
+
{
|
| 157 |
+
"kind": "acquisition",
|
| 158 |
+
"severity": "strong",
|
| 159 |
+
"description": "Thick slices and venous phase only. Same patients-on-paper as the reference, scanned differently.",
|
| 160 |
+
"evidence_expected": "Label prior and demographics match the reference (EMD and Hellinger near zero) while slice thickness and the embeddings shift clearly and baseline Dice drops a little. Aorta HU moves only slightly."
|
| 161 |
+
}
|
| 162 |
+
],
|
| 163 |
+
"cases": [
|
| 164 |
+
{
|
| 165 |
+
"row_id": "s0796",
|
| 166 |
+
"image_id": "s0796",
|
| 167 |
+
"patient_key": "s0796",
|
| 168 |
+
"kind": "index",
|
| 169 |
+
"copy": 0,
|
| 170 |
+
"new_patient_id": false,
|
| 171 |
+
"case_id": "c300335a95923bc7",
|
| 172 |
+
"patient_id": "4fd92cdf06c44f2b",
|
| 173 |
+
"age": 82.0,
|
| 174 |
+
"study_type": "ct neck-thorax-abdomen-pelvis",
|
| 175 |
+
"pathology": "tumor",
|
| 176 |
+
"split": "train",
|
| 177 |
+
"institute": "i",
|
| 178 |
+
"band_reference": "normal",
|
| 179 |
+
"band": "normal",
|
| 180 |
+
"diameter_mm": 19.924858845171276,
|
| 181 |
+
"contrast_phase": "venous",
|
| 182 |
+
"study_description": "CT Neck Chest Abdomen Pelvis with Contrast",
|
| 183 |
+
"rerun_knobs": "",
|
| 184 |
+
"stale_until_rerun": false
|
| 185 |
+
},
|
| 186 |
+
{
|
| 187 |
+
"row_id": "s0991",
|
| 188 |
+
"image_id": "s0991",
|
| 189 |
+
"patient_key": "s0991",
|
| 190 |
+
"kind": "index",
|
| 191 |
+
"copy": 0,
|
| 192 |
+
"new_patient_id": false,
|
| 193 |
+
"case_id": "8fabe39d53947af5",
|
| 194 |
+
"patient_id": "81f801ee3fd140ab",
|
| 195 |
+
"age": 71.0,
|
| 196 |
+
"study_type": "ct thorax-abdomen-pelvis",
|
| 197 |
+
"pathology": "tumor",
|
| 198 |
+
"split": "val",
|
| 199 |
+
"institute": "a",
|
| 200 |
+
"band_reference": "normal",
|
| 201 |
+
"band": "normal",
|
| 202 |
+
"diameter_mm": 19.144189719076646,
|
| 203 |
+
"contrast_phase": "venous",
|
| 204 |
+
"study_description": "CT Chest Abdomen Pelvis with Contrast",
|
| 205 |
+
"rerun_knobs": "",
|
| 206 |
+
"stale_until_rerun": false
|
| 207 |
+
},
|
| 208 |
+
{
|
| 209 |
+
"row_id": "s0440",
|
| 210 |
+
"image_id": "s0440",
|
| 211 |
+
"patient_key": "s0440",
|
| 212 |
+
"kind": "index",
|
| 213 |
+
"copy": 0,
|
| 214 |
+
"new_patient_id": false,
|
| 215 |
+
"case_id": "edc08730498f0001",
|
| 216 |
+
"patient_id": "c677517c32ca21b6",
|
| 217 |
+
"age": 55.0,
|
| 218 |
+
"study_type": "ct thorax-abdomen-pelvis",
|
| 219 |
+
"pathology": "no_pathology",
|
| 220 |
+
"split": "test",
|
| 221 |
+
"institute": "i",
|
| 222 |
+
"band_reference": "normal",
|
| 223 |
+
"band": "normal",
|
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|
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{
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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},
|
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|
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|
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|
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|
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|
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|
| 1911 |
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"age": 42.0,
|
| 1912 |
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|
| 1913 |
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|
| 1914 |
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|
| 1915 |
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|
| 1916 |
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|
| 1917 |
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|
| 1918 |
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|
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|
| 1920 |
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|
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|
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|
| 1923 |
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}
|
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],
|
| 1925 |
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|
| 1926 |
+
"release_key_fingerprint": "88dd7eeed9a0"
|
| 1927 |
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}
|
keys/hospital_d.json
ADDED
|
@@ -0,0 +1,1914 @@
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|
| 1 |
+
{
|
| 2 |
+
"recipe_id": "vascular_referral_center",
|
| 3 |
+
"display_name": "Vascular Referral Center",
|
| 4 |
+
"tier": "dev",
|
| 5 |
+
"seed": 2028,
|
| 6 |
+
"source": "totalsegmentator",
|
| 7 |
+
"labels": {
|
| 8 |
+
"diameter_method": "outer_wall_orthogonal",
|
| 9 |
+
"column": "infrarenal_max_diam_outer_orth_mm_ref",
|
| 10 |
+
"aaa_threshold_mm": 30.0
|
| 11 |
+
},
|
| 12 |
+
"baseline": {
|
| 13 |
+
"method": "outer_wall_orthogonal",
|
| 14 |
+
"column": "infrarenal_max_diam_outer_orth_mm_pred",
|
| 15 |
+
"aaa_threshold_mm": 30.0
|
| 16 |
+
},
|
| 17 |
+
"sampling": {
|
| 18 |
+
"candidates": 357,
|
| 19 |
+
"enrich": {
|
| 20 |
+
"aaa": 0.25,
|
| 21 |
+
"ectatic": 0.15,
|
| 22 |
+
"sex_M": 0.75
|
| 23 |
+
},
|
| 24 |
+
"band_target": {
|
| 25 |
+
"aaa": 20,
|
| 26 |
+
"ectatic": 12,
|
| 27 |
+
"normal": 48
|
| 28 |
+
},
|
| 29 |
+
"shortfall": {},
|
| 30 |
+
"objective": 0.0,
|
| 31 |
+
"targets": {
|
| 32 |
+
"sex": {
|
| 33 |
+
"target": {
|
| 34 |
+
"M": 0.75,
|
| 35 |
+
"F": 0.25
|
| 36 |
+
},
|
| 37 |
+
"weight": 1.0
|
| 38 |
+
},
|
| 39 |
+
"contrast_phase": {
|
| 40 |
+
"target": {
|
| 41 |
+
"arterial": 0.7
|
| 42 |
+
},
|
| 43 |
+
"weight": 1.0
|
| 44 |
+
}
|
| 45 |
+
}
|
| 46 |
+
},
|
| 47 |
+
"knobs": [
|
| 48 |
+
{
|
| 49 |
+
"type": "protocol_vocabulary",
|
| 50 |
+
"strength": "none",
|
| 51 |
+
"params": {
|
| 52 |
+
"style": "site_mixed",
|
| 53 |
+
"vocab_dir": "recipes/vocab",
|
| 54 |
+
"p_protocol_is_orderable": 0.15
|
| 55 |
+
},
|
| 56 |
+
"param_sources": {
|
| 57 |
+
"style": "recipe",
|
| 58 |
+
"vocab_dir": "recipe",
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{
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"type": "contrast_phase_enrich",
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"strength": "strong",
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},
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{
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},
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},
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},
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|
| 1863 |
+
"study_description": "CT Neck Chest Abdomen Pelvis with Contrast",
|
| 1864 |
+
"rerun_knobs": "",
|
| 1865 |
+
"stale_until_rerun": false
|
| 1866 |
+
},
|
| 1867 |
+
{
|
| 1868 |
+
"row_id": "s0549",
|
| 1869 |
+
"image_id": "s0549",
|
| 1870 |
+
"patient_key": "s0549",
|
| 1871 |
+
"kind": "index",
|
| 1872 |
+
"copy": 0,
|
| 1873 |
+
"new_patient_id": false,
|
| 1874 |
+
"case_id": "5b48020aeb26a35a",
|
| 1875 |
+
"patient_id": "14552504a533c008",
|
| 1876 |
+
"age": 69.0,
|
| 1877 |
+
"study_type": "ct thorax-abdomen-pelvis",
|
| 1878 |
+
"pathology": "tumor",
|
| 1879 |
+
"split": "train",
|
| 1880 |
+
"institute": "c",
|
| 1881 |
+
"band_reference": "normal",
|
| 1882 |
+
"band": "normal",
|
| 1883 |
+
"diameter_mm": 22.41093483101497,
|
| 1884 |
+
"contrast_phase": "venous",
|
| 1885 |
+
"study_description": "CT CAP w/ IV Contrast",
|
| 1886 |
+
"rerun_knobs": "",
|
| 1887 |
+
"stale_until_rerun": false
|
| 1888 |
+
},
|
| 1889 |
+
{
|
| 1890 |
+
"row_id": "s0842",
|
| 1891 |
+
"image_id": "s0842",
|
| 1892 |
+
"patient_key": "s0842",
|
| 1893 |
+
"kind": "index",
|
| 1894 |
+
"copy": 0,
|
| 1895 |
+
"new_patient_id": false,
|
| 1896 |
+
"case_id": "b3f660b2fc78d67f",
|
| 1897 |
+
"patient_id": "2ee4e30f95cb6ff8",
|
| 1898 |
+
"age": 64.0,
|
| 1899 |
+
"study_type": "ct thorax-abdomen-pelvis",
|
| 1900 |
+
"pathology": "other",
|
| 1901 |
+
"split": "train",
|
| 1902 |
+
"institute": "i",
|
| 1903 |
+
"band_reference": "normal",
|
| 1904 |
+
"band": "normal",
|
| 1905 |
+
"diameter_mm": 21.213203435596427,
|
| 1906 |
+
"contrast_phase": "arterial",
|
| 1907 |
+
"study_description": "CT CAP w/ IV Contrast",
|
| 1908 |
+
"rerun_knobs": "",
|
| 1909 |
+
"stale_until_rerun": false
|
| 1910 |
+
}
|
| 1911 |
+
],
|
| 1912 |
+
"public_name": "hospital_d",
|
| 1913 |
+
"release_key_fingerprint": "88dd7eeed9a0"
|
| 1914 |
+
}
|
keys/hospital_e.json
ADDED
|
@@ -0,0 +1,1917 @@
|
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|
|
| 1 |
+
{
|
| 2 |
+
"recipe_id": "reader_drift_hospital",
|
| 3 |
+
"display_name": "Reader Drift Hospital",
|
| 4 |
+
"tier": "dev",
|
| 5 |
+
"seed": 2031,
|
| 6 |
+
"source": "totalsegmentator",
|
| 7 |
+
"labels": {
|
| 8 |
+
"diameter_method": "lumen_axial",
|
| 9 |
+
"column": "infrarenal_max_diam_lumen_axial_mm_ref",
|
| 10 |
+
"aaa_threshold_mm": 25.0
|
| 11 |
+
},
|
| 12 |
+
"baseline": {
|
| 13 |
+
"method": "outer_wall_orthogonal",
|
| 14 |
+
"column": "infrarenal_max_diam_outer_orth_mm_pred",
|
| 15 |
+
"aaa_threshold_mm": 30.0
|
| 16 |
+
},
|
| 17 |
+
"sampling": {
|
| 18 |
+
"candidates": 257,
|
| 19 |
+
"relabel": {
|
| 20 |
+
"reference_aaa_share": 0.0,
|
| 21 |
+
"source": "default",
|
| 22 |
+
"reference_aaa_rows": 0
|
| 23 |
+
},
|
| 24 |
+
"band_target": {
|
| 25 |
+
"aaa": 7,
|
| 26 |
+
"normal": 73,
|
| 27 |
+
"aaa_reference": 0
|
| 28 |
+
},
|
| 29 |
+
"shortfall": {},
|
| 30 |
+
"objective": 0.022094594594594594,
|
| 31 |
+
"targets": {
|
| 32 |
+
"age_band": {
|
| 33 |
+
"target": {
|
| 34 |
+
"70-79": 0.24,
|
| 35 |
+
"60-69": 0.24,
|
| 36 |
+
"50-59": 0.21,
|
| 37 |
+
"80-89": 0.09,
|
| 38 |
+
"40-49": 0.09,
|
| 39 |
+
"30-39": 0.07,
|
| 40 |
+
"20-29": 0.04,
|
| 41 |
+
"90-99": 0.02
|
| 42 |
+
},
|
| 43 |
+
"weight": 1.0
|
| 44 |
+
},
|
| 45 |
+
"sex": {
|
| 46 |
+
"target": {
|
| 47 |
+
"M": 0.56,
|
| 48 |
+
"F": 0.44
|
| 49 |
+
},
|
| 50 |
+
"weight": 1.0
|
| 51 |
+
},
|
| 52 |
+
"contrast_phase": {
|
| 53 |
+
"target": {
|
| 54 |
+
"venous": 0.8108108108108107,
|
| 55 |
+
"arterial": 0.1891891891891892
|
| 56 |
+
},
|
| 57 |
+
"weight": 0.5
|
| 58 |
+
},
|
| 59 |
+
"slice_thickness_class": {
|
| 60 |
+
"target": {
|
| 61 |
+
"thin": 0.55,
|
| 62 |
+
"standard": 0.34,
|
| 63 |
+
"thick": 0.11
|
| 64 |
+
},
|
| 65 |
+
"weight": 0.5
|
| 66 |
+
}
|
| 67 |
+
}
|
| 68 |
+
},
|
| 69 |
+
"knobs": [
|
| 70 |
+
{
|
| 71 |
+
"type": "protocol_vocabulary",
|
| 72 |
+
"strength": "none",
|
| 73 |
+
"params": {
|
| 74 |
+
"style": "site_mixed",
|
| 75 |
+
"vocab_dir": "recipes/vocab",
|
| 76 |
+
"p_protocol_is_orderable": 0.15
|
| 77 |
+
},
|
| 78 |
+
"param_sources": {
|
| 79 |
+
"style": "recipe",
|
| 80 |
+
"vocab_dir": "recipe",
|
| 81 |
+
"p_protocol_is_orderable": "recipe"
|
| 82 |
+
},
|
| 83 |
+
"realised": {
|
| 84 |
+
"protocol_is_orderable": 0.1875,
|
| 85 |
+
"study_type_fallback_rows": 5,
|
| 86 |
+
"distinct_study_description": 18,
|
| 87 |
+
"distinct_protocol_name": 25
|
| 88 |
+
}
|
| 89 |
+
}
|
| 90 |
+
],
|
| 91 |
+
"realised": {
|
| 92 |
+
"n": 80,
|
| 93 |
+
"unique_patients": 80,
|
| 94 |
+
"distinct_patient_ids": 80,
|
| 95 |
+
"aaa": 7,
|
| 96 |
+
"aaa_share": 0.0875,
|
| 97 |
+
"ectatic": 0,
|
| 98 |
+
"ectatic_share": 0.0,
|
| 99 |
+
"reference_band_aaa": 0,
|
| 100 |
+
"reference_band_ectatic": 8,
|
| 101 |
+
"age_mean": 61.1625,
|
| 102 |
+
"age_60_plus": 0.575,
|
| 103 |
+
"male_share": 0.5625,
|
| 104 |
+
"age_band": {
|
| 105 |
+
"20-29": 3,
|
| 106 |
+
"30-39": 6,
|
| 107 |
+
"40-49": 8,
|
| 108 |
+
"50-59": 17,
|
| 109 |
+
"60-69": 19,
|
| 110 |
+
"70-79": 19,
|
| 111 |
+
"80-89": 7,
|
| 112 |
+
"90-99": 1
|
| 113 |
+
},
|
| 114 |
+
"contrast_phase": {
|
| 115 |
+
"arterial": 15,
|
| 116 |
+
"venous": 65
|
| 117 |
+
},
|
| 118 |
+
"scanner_vendor": {
|
| 119 |
+
"siemens": 67,
|
| 120 |
+
"philips": 8,
|
| 121 |
+
"ge": 4,
|
| 122 |
+
"nan": 1
|
| 123 |
+
},
|
| 124 |
+
"slice_thickness_class": {
|
| 125 |
+
"standard": 27,
|
| 126 |
+
"thick": 9,
|
| 127 |
+
"thin": 44
|
| 128 |
+
},
|
| 129 |
+
"mean_dice": 0.9791863301925533,
|
| 130 |
+
"stale_rows": 0
|
| 131 |
+
},
|
| 132 |
+
"match_required": true,
|
| 133 |
+
"match_vs_reference": {
|
| 134 |
+
"aaa_rel": 0.027777777777777804,
|
| 135 |
+
"male_rel": 0.004464285714285619,
|
| 136 |
+
"age60_rel": 0.025423728813559344,
|
| 137 |
+
"age_band_tv": 0.017500000000000005,
|
| 138 |
+
"phase_tv": 0.26,
|
| 139 |
+
"ok": true
|
| 140 |
+
},
|
| 141 |
+
"release": {
|
| 142 |
+
"withhold_columns": [],
|
| 143 |
+
"patient_id": "keep"
|
| 144 |
+
},
|
| 145 |
+
"waldos": [
|
| 146 |
+
{
|
| 147 |
+
"kind": "labeling_convention",
|
| 148 |
+
"severity": "strong",
|
| 149 |
+
"description": "Measures the lumen rather than the outer wall and calls AAA at 2.5 cm. Same images, different truth.",
|
| 150 |
+
"evidence_expected": "P(Y) and P(X) match the reference, but the image-to-label relationship differs (I(S;Y|X) > 0; diameter vs image features disagree on matched cases)."
|
| 151 |
+
}
|
| 152 |
+
],
|
| 153 |
+
"cases": [
|
| 154 |
+
{
|
| 155 |
+
"row_id": "s0139",
|
| 156 |
+
"image_id": "s0139",
|
| 157 |
+
"patient_key": "s0139",
|
| 158 |
+
"kind": "index",
|
| 159 |
+
"copy": 0,
|
| 160 |
+
"new_patient_id": false,
|
| 161 |
+
"case_id": "6c2e09317cec07c7",
|
| 162 |
+
"patient_id": "032cae7e705ca6fb",
|
| 163 |
+
"age": 30.0,
|
| 164 |
+
"study_type": "ct abdomen-pelvis",
|
| 165 |
+
"pathology": "no_pathology",
|
| 166 |
+
"split": "train",
|
| 167 |
+
"institute": "i",
|
| 168 |
+
"band_reference": "normal",
|
| 169 |
+
"band": "normal",
|
| 170 |
+
"diameter_mm": 15.692354826475215,
|
| 171 |
+
"contrast_phase": "venous",
|
| 172 |
+
"study_description": "CTA AP",
|
| 173 |
+
"rerun_knobs": "",
|
| 174 |
+
"stale_until_rerun": false
|
| 175 |
+
},
|
| 176 |
+
{
|
| 177 |
+
"row_id": "s0694",
|
| 178 |
+
"image_id": "s0694",
|
| 179 |
+
"patient_key": "s0694",
|
| 180 |
+
"kind": "index",
|
| 181 |
+
"copy": 0,
|
| 182 |
+
"new_patient_id": false,
|
| 183 |
+
"case_id": "c27b966a1047d549",
|
| 184 |
+
"patient_id": "e3b2e4b74f01cd21",
|
| 185 |
+
"age": 32.0,
|
| 186 |
+
"study_type": "ct thorax-abdomen",
|
| 187 |
+
"pathology": "unclear",
|
| 188 |
+
"split": "train",
|
| 189 |
+
"institute": "e",
|
| 190 |
+
"band_reference": "normal",
|
| 191 |
+
"band": "normal",
|
| 192 |
+
"diameter_mm": 19.13765920900464,
|
| 193 |
+
"contrast_phase": "venous",
|
| 194 |
+
"study_description": "CT CAP w/ IV Contrast",
|
| 195 |
+
"rerun_knobs": "",
|
| 196 |
+
"stale_until_rerun": false
|
| 197 |
+
},
|
| 198 |
+
{
|
| 199 |
+
"row_id": "s0971",
|
| 200 |
+
"image_id": "s0971",
|
| 201 |
+
"patient_key": "s0971",
|
| 202 |
+
"kind": "index",
|
| 203 |
+
"copy": 0,
|
| 204 |
+
"new_patient_id": false,
|
| 205 |
+
"case_id": "9d788c85d8c2e321",
|
| 206 |
+
"patient_id": "be60cd55bd55478f",
|
| 207 |
+
"age": 67.0,
|
| 208 |
+
"study_type": "ct pelvis",
|
| 209 |
+
"pathology": "no_pathology",
|
| 210 |
+
"split": "train",
|
| 211 |
+
"institute": "i",
|
| 212 |
+
"band_reference": null,
|
| 213 |
+
"band": "normal",
|
| 214 |
+
"diameter_mm": 22.45551157288562,
|
| 215 |
+
"contrast_phase": "arterial",
|
| 216 |
+
"study_description": "CTA Abdomen/Pelvis",
|
| 217 |
+
"rerun_knobs": "",
|
| 218 |
+
"stale_until_rerun": false
|
| 219 |
+
},
|
| 220 |
+
{
|
| 221 |
+
"row_id": "s0204",
|
| 222 |
+
"image_id": "s0204",
|
| 223 |
+
"patient_key": "s0204",
|
| 224 |
+
"kind": "index",
|
| 225 |
+
"copy": 0,
|
| 226 |
+
"new_patient_id": false,
|
| 227 |
+
"case_id": "b664454d43d9e494",
|
| 228 |
+
"patient_id": "069a4eebaa2c9ce1",
|
| 229 |
+
"age": 36.0,
|
| 230 |
+
"study_type": "ct abdomen-pelvis",
|
| 231 |
+
"pathology": "no_pathology",
|
| 232 |
+
"split": "train",
|
| 233 |
+
"institute": "c",
|
| 234 |
+
"band_reference": "normal",
|
| 235 |
+
"band": "normal",
|
| 236 |
+
"diameter_mm": 18.5,
|
| 237 |
+
"contrast_phase": "venous",
|
| 238 |
+
"study_description": "CTA Abdomen/Pelvis",
|
| 239 |
+
"rerun_knobs": "",
|
| 240 |
+
"stale_until_rerun": false
|
| 241 |
+
},
|
| 242 |
+
{
|
| 243 |
+
"row_id": "s0764",
|
| 244 |
+
"image_id": "s0764",
|
| 245 |
+
"patient_key": "s0764",
|
| 246 |
+
"kind": "index",
|
| 247 |
+
"copy": 0,
|
| 248 |
+
"new_patient_id": false,
|
| 249 |
+
"case_id": "480d002defa7547d",
|
| 250 |
+
"patient_id": "ad4970d5d4fc14f2",
|
| 251 |
+
"age": 75.0,
|
| 252 |
+
"study_type": "ct neck-thorax-abdomen-pelvis",
|
| 253 |
+
"pathology": "no_pathology",
|
| 254 |
+
"split": "train",
|
| 255 |
+
"institute": "a",
|
| 256 |
+
"band_reference": "normal",
|
| 257 |
+
"band": "normal",
|
| 258 |
+
"diameter_mm": 23.243278598338918,
|
| 259 |
+
"contrast_phase": "venous",
|
| 260 |
+
"study_description": "CT Staging Neck/CAP",
|
| 261 |
+
"rerun_knobs": "",
|
| 262 |
+
"stale_until_rerun": false
|
| 263 |
+
},
|
| 264 |
+
{
|
| 265 |
+
"row_id": "s0015",
|
| 266 |
+
"image_id": "s0015",
|
| 267 |
+
"patient_key": "s0015",
|
| 268 |
+
"kind": "index",
|
| 269 |
+
"copy": 0,
|
| 270 |
+
"new_patient_id": false,
|
| 271 |
+
"case_id": "21512bd4b56ff765",
|
| 272 |
+
"patient_id": "bd612a43afdec4f7",
|
| 273 |
+
"age": 56.0,
|
| 274 |
+
"study_type": "ct abdomen-pelvis",
|
| 275 |
+
"pathology": "bleeding",
|
| 276 |
+
"split": "train",
|
| 277 |
+
"institute": "i",
|
| 278 |
+
"band_reference": "normal",
|
| 279 |
+
"band": "normal",
|
| 280 |
+
"diameter_mm": 24.37724348649781,
|
| 281 |
+
"contrast_phase": "venous",
|
| 282 |
+
"study_description": "CT Abdomen Pelvis with Contrast",
|
| 283 |
+
"rerun_knobs": "",
|
| 284 |
+
"stale_until_rerun": false
|
| 285 |
+
},
|
| 286 |
+
{
|
| 287 |
+
"row_id": "s0635",
|
| 288 |
+
"image_id": "s0635",
|
| 289 |
+
"patient_key": "s0635",
|
| 290 |
+
"kind": "index",
|
| 291 |
+
"copy": 0,
|
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| 1728 |
+
"split": "train",
|
| 1729 |
+
"institute": "i",
|
| 1730 |
+
"band_reference": "normal",
|
| 1731 |
+
"band": "normal",
|
| 1732 |
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"diameter_mm": 19.67866865415443,
|
| 1733 |
+
"contrast_phase": "arterial",
|
| 1734 |
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"study_description": "CTA TAVR Planning Chest/Abd/Pelvis",
|
| 1735 |
+
"rerun_knobs": "",
|
| 1736 |
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"stale_until_rerun": false
|
| 1737 |
+
},
|
| 1738 |
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{
|
| 1739 |
+
"row_id": "s1321",
|
| 1740 |
+
"image_id": "s1321",
|
| 1741 |
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"patient_key": "s1321",
|
| 1742 |
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"kind": "index",
|
| 1743 |
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"copy": 0,
|
| 1744 |
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"new_patient_id": false,
|
| 1745 |
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"case_id": "a97ecd62c9cd5217",
|
| 1746 |
+
"patient_id": "d02030c2104c382b",
|
| 1747 |
+
"age": 50.0,
|
| 1748 |
+
"study_type": "ct polytrauma",
|
| 1749 |
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"pathology": "trauma",
|
| 1750 |
+
"split": "train",
|
| 1751 |
+
"institute": "i",
|
| 1752 |
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"band_reference": "normal",
|
| 1753 |
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"band": "normal",
|
| 1754 |
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"diameter_mm": 19.13765920900464,
|
| 1755 |
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"contrast_phase": "venous",
|
| 1756 |
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"study_description": "CT Polytrauma Whole Body",
|
| 1757 |
+
"rerun_knobs": "",
|
| 1758 |
+
"stale_until_rerun": false
|
| 1759 |
+
},
|
| 1760 |
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{
|
| 1761 |
+
"row_id": "s0668",
|
| 1762 |
+
"image_id": "s0668",
|
| 1763 |
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"patient_key": "s0668",
|
| 1764 |
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"kind": "index",
|
| 1765 |
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"copy": 0,
|
| 1766 |
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"new_patient_id": false,
|
| 1767 |
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"case_id": "6cdff8e372486e33",
|
| 1768 |
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"patient_id": "c2338f4fe7126319",
|
| 1769 |
+
"age": 51.0,
|
| 1770 |
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"study_type": "ct abdomen",
|
| 1771 |
+
"pathology": "unclear",
|
| 1772 |
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"split": "train",
|
| 1773 |
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"institute": "e",
|
| 1774 |
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"band_reference": "normal",
|
| 1775 |
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"band": "normal",
|
| 1776 |
+
"diameter_mm": 16.278820596099706,
|
| 1777 |
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"contrast_phase": "arterial",
|
| 1778 |
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"study_description": "CT Angio Abdomen",
|
| 1779 |
+
"rerun_knobs": "",
|
| 1780 |
+
"stale_until_rerun": false
|
| 1781 |
+
},
|
| 1782 |
+
{
|
| 1783 |
+
"row_id": "s0884",
|
| 1784 |
+
"image_id": "s0884",
|
| 1785 |
+
"patient_key": "s0884",
|
| 1786 |
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"kind": "index",
|
| 1787 |
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"copy": 0,
|
| 1788 |
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"new_patient_id": false,
|
| 1789 |
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"case_id": "d9a8b8bf25406e79",
|
| 1790 |
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"patient_id": "f44a34915ce472a5",
|
| 1791 |
+
"age": 56.0,
|
| 1792 |
+
"study_type": "ct thorax-abdomen-pelvis",
|
| 1793 |
+
"pathology": "inflammation",
|
| 1794 |
+
"split": "train",
|
| 1795 |
+
"institute": "i",
|
| 1796 |
+
"band_reference": "normal",
|
| 1797 |
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"band": "normal",
|
| 1798 |
+
"diameter_mm": 22.80350850198276,
|
| 1799 |
+
"contrast_phase": "venous",
|
| 1800 |
+
"study_description": "CT CAP w/ IV Contrast",
|
| 1801 |
+
"rerun_knobs": "",
|
| 1802 |
+
"stale_until_rerun": false
|
| 1803 |
+
},
|
| 1804 |
+
{
|
| 1805 |
+
"row_id": "s0077",
|
| 1806 |
+
"image_id": "s0077",
|
| 1807 |
+
"patient_key": "s0077",
|
| 1808 |
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"kind": "index",
|
| 1809 |
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"copy": 0,
|
| 1810 |
+
"new_patient_id": false,
|
| 1811 |
+
"case_id": "a8f9da86ebf2dec7",
|
| 1812 |
+
"patient_id": "94eebcaf4a9a4a96",
|
| 1813 |
+
"age": 77.0,
|
| 1814 |
+
"study_type": "ct abdomen-pelvis",
|
| 1815 |
+
"pathology": "tumor",
|
| 1816 |
+
"split": "train",
|
| 1817 |
+
"institute": "i",
|
| 1818 |
+
"band_reference": "normal",
|
| 1819 |
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"band": "normal",
|
| 1820 |
+
"diameter_mm": 22.38861317723811,
|
| 1821 |
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"contrast_phase": "venous",
|
| 1822 |
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"study_description": "CTA AP",
|
| 1823 |
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"rerun_knobs": "",
|
| 1824 |
+
"stale_until_rerun": false
|
| 1825 |
+
},
|
| 1826 |
+
{
|
| 1827 |
+
"row_id": "s0256",
|
| 1828 |
+
"image_id": "s0256",
|
| 1829 |
+
"patient_key": "s0256",
|
| 1830 |
+
"kind": "index",
|
| 1831 |
+
"copy": 0,
|
| 1832 |
+
"new_patient_id": false,
|
| 1833 |
+
"case_id": "5246c81c91eed68d",
|
| 1834 |
+
"patient_id": "ce23194712382df8",
|
| 1835 |
+
"age": 44.0,
|
| 1836 |
+
"study_type": "ct thorax-chest",
|
| 1837 |
+
"pathology": "no_pathology",
|
| 1838 |
+
"split": "train",
|
| 1839 |
+
"institute": "i",
|
| 1840 |
+
"band_reference": "normal",
|
| 1841 |
+
"band": "normal",
|
| 1842 |
+
"diameter_mm": 18.5,
|
| 1843 |
+
"contrast_phase": "venous",
|
| 1844 |
+
"study_description": "CT Angio Ab/Pelv",
|
| 1845 |
+
"rerun_knobs": "",
|
| 1846 |
+
"stale_until_rerun": false
|
| 1847 |
+
},
|
| 1848 |
+
{
|
| 1849 |
+
"row_id": "s0625",
|
| 1850 |
+
"image_id": "s0625",
|
| 1851 |
+
"patient_key": "s0625",
|
| 1852 |
+
"kind": "index",
|
| 1853 |
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"copy": 0,
|
| 1854 |
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"new_patient_id": false,
|
| 1855 |
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"case_id": "43ad17f028f40216",
|
| 1856 |
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"patient_id": "f718a56db8e8459a",
|
| 1857 |
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"age": 54.0,
|
| 1858 |
+
"study_type": "ct neck-thorax-abdomen-pelvis",
|
| 1859 |
+
"pathology": "tumor",
|
| 1860 |
+
"split": "val",
|
| 1861 |
+
"institute": "i",
|
| 1862 |
+
"band_reference": "normal",
|
| 1863 |
+
"band": "normal",
|
| 1864 |
+
"diameter_mm": 20.988091861815356,
|
| 1865 |
+
"contrast_phase": "venous",
|
| 1866 |
+
"study_description": "CT Staging Neck/CAP",
|
| 1867 |
+
"rerun_knobs": "",
|
| 1868 |
+
"stale_until_rerun": false
|
| 1869 |
+
},
|
| 1870 |
+
{
|
| 1871 |
+
"row_id": "s0670",
|
| 1872 |
+
"image_id": "s0670",
|
| 1873 |
+
"patient_key": "s0670",
|
| 1874 |
+
"kind": "index",
|
| 1875 |
+
"copy": 0,
|
| 1876 |
+
"new_patient_id": false,
|
| 1877 |
+
"case_id": "d0e197a675ab18b3",
|
| 1878 |
+
"patient_id": "94579c422e8141ec",
|
| 1879 |
+
"age": 84.0,
|
| 1880 |
+
"study_type": "ct neck-thorax-abdomen-pelvis",
|
| 1881 |
+
"pathology": "tumor",
|
| 1882 |
+
"split": "train",
|
| 1883 |
+
"institute": "i",
|
| 1884 |
+
"band_reference": "normal",
|
| 1885 |
+
"band": "normal",
|
| 1886 |
+
"diameter_mm": 18.5,
|
| 1887 |
+
"contrast_phase": "venous",
|
| 1888 |
+
"study_description": "CT Neck Chest Abdomen Pelvis with Contrast",
|
| 1889 |
+
"rerun_knobs": "",
|
| 1890 |
+
"stale_until_rerun": false
|
| 1891 |
+
},
|
| 1892 |
+
{
|
| 1893 |
+
"row_id": "s0206",
|
| 1894 |
+
"image_id": "s0206",
|
| 1895 |
+
"patient_key": "s0206",
|
| 1896 |
+
"kind": "index",
|
| 1897 |
+
"copy": 0,
|
| 1898 |
+
"new_patient_id": false,
|
| 1899 |
+
"case_id": "1d0b52a4a0630466",
|
| 1900 |
+
"patient_id": "314c3ab88c6aac75",
|
| 1901 |
+
"age": 81.0,
|
| 1902 |
+
"study_type": "ct abdomen",
|
| 1903 |
+
"pathology": "unclear",
|
| 1904 |
+
"split": "train",
|
| 1905 |
+
"institute": "b",
|
| 1906 |
+
"band_reference": "normal",
|
| 1907 |
+
"band": "normal",
|
| 1908 |
+
"diameter_mm": 20.93442141545832,
|
| 1909 |
+
"contrast_phase": "venous",
|
| 1910 |
+
"study_description": "CTA Abdominal Aorta",
|
| 1911 |
+
"rerun_knobs": "",
|
| 1912 |
+
"stale_until_rerun": false
|
| 1913 |
+
}
|
| 1914 |
+
],
|
| 1915 |
+
"public_name": "hospital_e",
|
| 1916 |
+
"release_key_fingerprint": "88dd7eeed9a0"
|
| 1917 |
+
}
|
keys/hospital_f.json
ADDED
|
@@ -0,0 +1,1921 @@
|
|
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|
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|
|
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|
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|
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|
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|
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|
|
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|
|
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|
| 1 |
+
{
|
| 2 |
+
"recipe_id": "h0_well_iid",
|
| 3 |
+
"display_name": "Hidden A",
|
| 4 |
+
"tier": "hidden",
|
| 5 |
+
"seed": 3001,
|
| 6 |
+
"source": "totalsegmentator",
|
| 7 |
+
"labels": {
|
| 8 |
+
"diameter_method": "outer_wall_orthogonal",
|
| 9 |
+
"column": "infrarenal_max_diam_outer_orth_mm_ref",
|
| 10 |
+
"aaa_threshold_mm": 30.0
|
| 11 |
+
},
|
| 12 |
+
"baseline": {
|
| 13 |
+
"method": "outer_wall_orthogonal",
|
| 14 |
+
"column": "infrarenal_max_diam_outer_orth_mm_pred",
|
| 15 |
+
"aaa_threshold_mm": 30.0
|
| 16 |
+
},
|
| 17 |
+
"sampling": {
|
| 18 |
+
"candidates": 472,
|
| 19 |
+
"band_target": {
|
| 20 |
+
"aaa": 7,
|
| 21 |
+
"ectatic": 6,
|
| 22 |
+
"normal": 67
|
| 23 |
+
},
|
| 24 |
+
"band_target_joint": {
|
| 25 |
+
"aaa": 16,
|
| 26 |
+
"ectatic": 14,
|
| 27 |
+
"normal": 150
|
| 28 |
+
},
|
| 29 |
+
"shortfall": {},
|
| 30 |
+
"objective": 0.011793785310734467,
|
| 31 |
+
"targets": {
|
| 32 |
+
"age_band": {
|
| 33 |
+
"target": {
|
| 34 |
+
"60-69": 0.23516949152542374,
|
| 35 |
+
"70-79": 0.2266949152542373,
|
| 36 |
+
"50-59": 0.211864406779661,
|
| 37 |
+
"40-49": 0.11652542372881355,
|
| 38 |
+
"80-89": 0.1016949152542373,
|
| 39 |
+
"30-39": 0.05508474576271186,
|
| 40 |
+
"20-29": 0.02754237288135593,
|
| 41 |
+
"90-99": 0.023305084745762712,
|
| 42 |
+
"10-19": 0.00211864406779661
|
| 43 |
+
},
|
| 44 |
+
"weight": 1.0
|
| 45 |
+
},
|
| 46 |
+
"sex": {
|
| 47 |
+
"target": {
|
| 48 |
+
"M": 0.5423728813559322,
|
| 49 |
+
"F": 0.4576271186440678
|
| 50 |
+
},
|
| 51 |
+
"weight": 1.0
|
| 52 |
+
},
|
| 53 |
+
"slice_thickness_class": {
|
| 54 |
+
"target": {
|
| 55 |
+
"thin": 0.5529661016949152,
|
| 56 |
+
"standard": 0.3241525423728814,
|
| 57 |
+
"thick": 0.1228813559322034
|
| 58 |
+
},
|
| 59 |
+
"weight": 0.5
|
| 60 |
+
},
|
| 61 |
+
"contrast_phase": {
|
| 62 |
+
"target": {
|
| 63 |
+
"arterial": 0.12,
|
| 64 |
+
"non-contrast": 0.275,
|
| 65 |
+
"venous": 0.605
|
| 66 |
+
},
|
| 67 |
+
"weight": 1.0
|
| 68 |
+
}
|
| 69 |
+
},
|
| 70 |
+
"note": "one stratified draw of 180 split by band across st_shuffle_general, h0_well_iid"
|
| 71 |
+
},
|
| 72 |
+
"knobs": [
|
| 73 |
+
{
|
| 74 |
+
"type": "protocol_vocabulary",
|
| 75 |
+
"strength": "none",
|
| 76 |
+
"params": {
|
| 77 |
+
"style": "site_mixed",
|
| 78 |
+
"vocab_dir": "recipes/vocab",
|
| 79 |
+
"p_protocol_is_orderable": 0.15
|
| 80 |
+
},
|
| 81 |
+
"param_sources": {
|
| 82 |
+
"style": "recipe",
|
| 83 |
+
"vocab_dir": "recipe",
|
| 84 |
+
"p_protocol_is_orderable": "recipe"
|
| 85 |
+
},
|
| 86 |
+
"realised": {
|
| 87 |
+
"protocol_is_orderable": 0.1625,
|
| 88 |
+
"study_type_fallback_rows": 5,
|
| 89 |
+
"distinct_study_description": 20,
|
| 90 |
+
"distinct_protocol_name": 25
|
| 91 |
+
}
|
| 92 |
+
}
|
| 93 |
+
],
|
| 94 |
+
"realised": {
|
| 95 |
+
"n": 80,
|
| 96 |
+
"unique_patients": 80,
|
| 97 |
+
"distinct_patient_ids": 80,
|
| 98 |
+
"aaa": 7,
|
| 99 |
+
"aaa_share": 0.0875,
|
| 100 |
+
"ectatic": 6,
|
| 101 |
+
"ectatic_share": 0.075,
|
| 102 |
+
"reference_band_aaa": 7,
|
| 103 |
+
"reference_band_ectatic": 6,
|
| 104 |
+
"age_mean": 62.7875,
|
| 105 |
+
"age_60_plus": 0.5875,
|
| 106 |
+
"male_share": 0.525,
|
| 107 |
+
"age_band": {
|
| 108 |
+
"20-29": 1,
|
| 109 |
+
"30-39": 3,
|
| 110 |
+
"40-49": 12,
|
| 111 |
+
"50-59": 17,
|
| 112 |
+
"60-69": 19,
|
| 113 |
+
"70-79": 17,
|
| 114 |
+
"80-89": 9,
|
| 115 |
+
"90-99": 2
|
| 116 |
+
},
|
| 117 |
+
"contrast_phase": {
|
| 118 |
+
"arterial": 8,
|
| 119 |
+
"non-contrast": 23,
|
| 120 |
+
"venous": 49
|
| 121 |
+
},
|
| 122 |
+
"scanner_vendor": {
|
| 123 |
+
"siemens": 67,
|
| 124 |
+
"philips": 8,
|
| 125 |
+
"ge": 4,
|
| 126 |
+
"nan": 1
|
| 127 |
+
},
|
| 128 |
+
"slice_thickness_class": {
|
| 129 |
+
"standard": 24,
|
| 130 |
+
"thick": 11,
|
| 131 |
+
"thin": 45
|
| 132 |
+
},
|
| 133 |
+
"mean_dice": 0.9763950747610914,
|
| 134 |
+
"stale_rows": 0
|
| 135 |
+
},
|
| 136 |
+
"match_required": true,
|
| 137 |
+
"match_vs_reference": {
|
| 138 |
+
"aaa_rel": 0.027777777777777804,
|
| 139 |
+
"male_rel": 0.06250000000000006,
|
| 140 |
+
"age60_rel": 0.00423728813559313,
|
| 141 |
+
"age_band_tv": 0.09000000000000001,
|
| 142 |
+
"phase_tv": 0.04000000000000002,
|
| 143 |
+
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 1913 |
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|
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|
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|
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|
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}
|
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],
|
| 1919 |
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|
| 1920 |
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"release_key_fingerprint": "88dd7eeed9a0"
|
| 1921 |
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}
|
keys/hospital_g.json
ADDED
|
@@ -0,0 +1,2052 @@
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|
|
| 1 |
+
{
|
| 2 |
+
"recipe_id": "h1_single_axis_surprise",
|
| 3 |
+
"display_name": "Hidden B",
|
| 4 |
+
"tier": "hidden",
|
| 5 |
+
"seed": 3002,
|
| 6 |
+
"source": "totalsegmentator",
|
| 7 |
+
"labels": {
|
| 8 |
+
"diameter_method": "outer_wall_orthogonal",
|
| 9 |
+
"column": "infrarenal_max_diam_outer_orth_mm_ref",
|
| 10 |
+
"aaa_threshold_mm": 30.0
|
| 11 |
+
},
|
| 12 |
+
"baseline": {
|
| 13 |
+
"method": "outer_wall_orthogonal",
|
| 14 |
+
"column": "infrarenal_max_diam_outer_orth_mm_pred",
|
| 15 |
+
"aaa_threshold_mm": 30.0
|
| 16 |
+
},
|
| 17 |
+
"sampling": {
|
| 18 |
+
"candidates": 95,
|
| 19 |
+
"cross_from": {
|
| 20 |
+
"surveillance_clinic": {
|
| 21 |
+
"n": 2,
|
| 22 |
+
"planned": 2
|
| 23 |
+
}
|
| 24 |
+
},
|
| 25 |
+
"band_target": {
|
| 26 |
+
"aaa": 7,
|
| 27 |
+
"ectatic": 6,
|
| 28 |
+
"normal": 67
|
| 29 |
+
},
|
| 30 |
+
"shortfall": {},
|
| 31 |
+
"objective": 0.12624999999999997,
|
| 32 |
+
"targets": {
|
| 33 |
+
"age_band": {
|
| 34 |
+
"target": {
|
| 35 |
+
"70-79": 0.24,
|
| 36 |
+
"60-69": 0.24,
|
| 37 |
+
"50-59": 0.21,
|
| 38 |
+
"80-89": 0.09,
|
| 39 |
+
"40-49": 0.09,
|
| 40 |
+
"30-39": 0.07,
|
| 41 |
+
"20-29": 0.04,
|
| 42 |
+
"90-99": 0.02
|
| 43 |
+
},
|
| 44 |
+
"weight": 1.0
|
| 45 |
+
},
|
| 46 |
+
"sex": {
|
| 47 |
+
"target": {
|
| 48 |
+
"M": 0.56,
|
| 49 |
+
"F": 0.44
|
| 50 |
+
},
|
| 51 |
+
"weight": 1.0
|
| 52 |
+
},
|
| 53 |
+
"contrast_phase": {
|
| 54 |
+
"target": {
|
| 55 |
+
"venous": 0.6,
|
| 56 |
+
"non-contrast": 0.26,
|
| 57 |
+
"arterial": 0.14
|
| 58 |
+
},
|
| 59 |
+
"weight": 0.5
|
| 60 |
+
},
|
| 61 |
+
"slice_thickness_class": {
|
| 62 |
+
"target": {
|
| 63 |
+
"thin": 0.55,
|
| 64 |
+
"standard": 0.34,
|
| 65 |
+
"thick": 0.11
|
| 66 |
+
},
|
| 67 |
+
"weight": 0.5
|
| 68 |
+
}
|
| 69 |
+
}
|
| 70 |
+
},
|
| 71 |
+
"knobs": [
|
| 72 |
+
{
|
| 73 |
+
"type": "protocol_vocabulary",
|
| 74 |
+
"strength": "none",
|
| 75 |
+
"params": {
|
| 76 |
+
"style": "site_mixed",
|
| 77 |
+
"vocab_dir": "recipes/vocab",
|
| 78 |
+
"p_protocol_is_orderable": 0.15
|
| 79 |
+
},
|
| 80 |
+
"param_sources": {
|
| 81 |
+
"style": "recipe",
|
| 82 |
+
"vocab_dir": "recipe",
|
| 83 |
+
"p_protocol_is_orderable": "recipe"
|
| 84 |
+
},
|
| 85 |
+
"realised": {
|
| 86 |
+
"protocol_is_orderable": 0.1125,
|
| 87 |
+
"study_type_fallback_rows": 5,
|
| 88 |
+
"distinct_study_description": 21,
|
| 89 |
+
"distinct_protocol_name": 24
|
| 90 |
+
}
|
| 91 |
+
},
|
| 92 |
+
{
|
| 93 |
+
"type": "metadata_shortcut",
|
| 94 |
+
"strength": "strong",
|
| 95 |
+
"params": {
|
| 96 |
+
"column": "study_description",
|
| 97 |
+
"value": "CTA Abdominal Aorta - AAA Surveillance",
|
| 98 |
+
"p_given_aaa": 1.0,
|
| 99 |
+
"p_given_not_aaa": 0.01,
|
| 100 |
+
"label_correlation": null
|
| 101 |
+
},
|
| 102 |
+
"param_sources": {
|
| 103 |
+
"column": "recipe",
|
| 104 |
+
"value": "recipe",
|
| 105 |
+
"p_given_aaa": "recipe",
|
| 106 |
+
"p_given_not_aaa": "recipe",
|
| 107 |
+
"label_correlation": "default"
|
| 108 |
+
},
|
| 109 |
+
"realised": {
|
| 110 |
+
"rows_with_value": 8,
|
| 111 |
+
"aaa_with_value": 7,
|
| 112 |
+
"aaa_total": 7,
|
| 113 |
+
"non_aaa_with_value": 1,
|
| 114 |
+
"knob_rows": 8,
|
| 115 |
+
"phi": 0.9289853059279986,
|
| 116 |
+
"ppv": 0.875
|
| 117 |
+
}
|
| 118 |
+
},
|
| 119 |
+
{
|
| 120 |
+
"type": "cross_hospital_duplicates",
|
| 121 |
+
"strength": "weak",
|
| 122 |
+
"params": {
|
| 123 |
+
"with": "surveillance_clinic",
|
| 124 |
+
"n": 2,
|
| 125 |
+
"new_ids": true
|
| 126 |
+
},
|
| 127 |
+
"param_sources": {
|
| 128 |
+
"with": "recipe",
|
| 129 |
+
"n": "recipe",
|
| 130 |
+
"new_ids": "recipe"
|
| 131 |
+
},
|
| 132 |
+
"realised": {
|
| 133 |
+
"rows_here": 2,
|
| 134 |
+
"note": "rows are placed in whichever hospital is drawn later"
|
| 135 |
+
}
|
| 136 |
+
}
|
| 137 |
+
],
|
| 138 |
+
"realised": {
|
| 139 |
+
"n": 80,
|
| 140 |
+
"unique_patients": 80,
|
| 141 |
+
"distinct_patient_ids": 80,
|
| 142 |
+
"aaa": 7,
|
| 143 |
+
"aaa_share": 0.0875,
|
| 144 |
+
"ectatic": 6,
|
| 145 |
+
"ectatic_share": 0.075,
|
| 146 |
+
"reference_band_aaa": 7,
|
| 147 |
+
"reference_band_ectatic": 6,
|
| 148 |
+
"age_mean": 62.4125,
|
| 149 |
+
"age_60_plus": 0.575,
|
| 150 |
+
"male_share": 0.5625,
|
| 151 |
+
"age_band": {
|
| 152 |
+
"10-19": 1,
|
| 153 |
+
"20-29": 1,
|
| 154 |
+
"30-39": 2,
|
| 155 |
+
"40-49": 13,
|
| 156 |
+
"50-59": 17,
|
| 157 |
+
"60-69": 19,
|
| 158 |
+
"70-79": 17,
|
| 159 |
+
"80-89": 8,
|
| 160 |
+
"90-99": 2
|
| 161 |
+
},
|
| 162 |
+
"contrast_phase": {
|
| 163 |
+
"arterial": 8,
|
| 164 |
+
"non-contrast": 24,
|
| 165 |
+
"venous": 48
|
| 166 |
+
},
|
| 167 |
+
"scanner_vendor": {
|
| 168 |
+
"siemens": 66,
|
| 169 |
+
"philips": 8,
|
| 170 |
+
"ge": 4,
|
| 171 |
+
"nan": 2
|
| 172 |
+
},
|
| 173 |
+
"slice_thickness_class": {
|
| 174 |
+
"standard": 27,
|
| 175 |
+
"thick": 9,
|
| 176 |
+
"thin": 44
|
| 177 |
+
},
|
| 178 |
+
"mean_dice": 0.97244403831889,
|
| 179 |
+
"stale_rows": 2
|
| 180 |
+
},
|
| 181 |
+
"match_required": true,
|
| 182 |
+
"match_vs_reference": {
|
| 183 |
+
"aaa_rel": 0.027777777777777804,
|
| 184 |
+
"male_rel": 0.004464285714285619,
|
| 185 |
+
"age60_rel": 0.025423728813559344,
|
| 186 |
+
"age_band_tv": 0.10250000000000001,
|
| 187 |
+
"phase_tv": 0.039999999999999994,
|
| 188 |
+
"ok": true
|
| 189 |
+
},
|
| 190 |
+
"release": {
|
| 191 |
+
"withhold_columns": [],
|
| 192 |
+
"patient_id": "keep"
|
| 193 |
+
},
|
| 194 |
+
"waldos": [
|
| 195 |
+
{
|
| 196 |
+
"kind": "shortcut",
|
| 197 |
+
"severity": "strong",
|
| 198 |
+
"description": "A study description (the ordered exam name) that gives away the label. No dev hospital showed this kind of problem.",
|
| 199 |
+
"evidence_expected": "study_description predicts AAA far better than it should; a model can score well without looking at the image."
|
| 200 |
+
},
|
| 201 |
+
{
|
| 202 |
+
"kind": "clustering",
|
| 203 |
+
"severity": "weak",
|
| 204 |
+
"description": "Some patients from the Surveillance Clinic reappear under new IDs.",
|
| 205 |
+
"evidence_expected": "Cross-cohort near-duplicates."
|
| 206 |
+
}
|
| 207 |
+
],
|
| 208 |
+
"cases": [
|
| 209 |
+
{
|
| 210 |
+
"row_id": "s0543",
|
| 211 |
+
"image_id": "s0543",
|
| 212 |
+
"patient_key": "s0543",
|
| 213 |
+
"kind": "index",
|
| 214 |
+
"copy": 0,
|
| 215 |
+
"new_patient_id": false,
|
| 216 |
+
"from": null,
|
| 217 |
+
"case_id": "15c6c37aad9f6742",
|
| 218 |
+
"patient_id": "a361642d8667bf1b",
|
| 219 |
+
"age": 54.0,
|
| 220 |
+
"study_type": "ct thorax-abdomen-pelvis",
|
| 221 |
+
"pathology": "tumor",
|
| 222 |
+
"split": "test",
|
| 223 |
+
"institute": "i",
|
| 224 |
+
"band_reference": "normal",
|
| 225 |
+
"band": "normal",
|
| 226 |
+
"diameter_mm": 21.27204738618265,
|
| 227 |
+
"contrast_phase": "venous",
|
| 228 |
+
"study_description": "CT Chest Abdomen Pelvis with Contrast",
|
| 229 |
+
"rerun_knobs": "",
|
| 230 |
+
"stale_until_rerun": false
|
| 231 |
+
},
|
| 232 |
+
{
|
| 233 |
+
"row_id": "s0516",
|
| 234 |
+
"image_id": "s0516",
|
| 235 |
+
"patient_key": "s0516",
|
| 236 |
+
"kind": "index",
|
| 237 |
+
"copy": 0,
|
| 238 |
+
"new_patient_id": false,
|
| 239 |
+
"from": null,
|
| 240 |
+
"case_id": "3519b29c977bc2dd",
|
| 241 |
+
"patient_id": "a3f25b70df861f8c",
|
| 242 |
+
"age": 88.0,
|
| 243 |
+
"study_type": "ct thorax-abdomen-pelvis",
|
| 244 |
+
"pathology": "other",
|
| 245 |
+
"split": "train",
|
| 246 |
+
"institute": "i",
|
| 247 |
+
"band_reference": "ectatic",
|
| 248 |
+
"band": "ectatic",
|
| 249 |
+
"diameter_mm": 29.90819285747636,
|
| 250 |
+
"contrast_phase": "non-contrast",
|
| 251 |
+
"study_description": "CT Chest Abd Pelvis w/o Contrast",
|
| 252 |
+
"rerun_knobs": "",
|
| 253 |
+
"stale_until_rerun": false
|
| 254 |
+
},
|
| 255 |
+
{
|
| 256 |
+
"row_id": "s0182",
|
| 257 |
+
"image_id": "s0182",
|
| 258 |
+
"patient_key": "s0182",
|
| 259 |
+
"kind": "index",
|
| 260 |
+
"copy": 0,
|
| 261 |
+
"new_patient_id": false,
|
| 262 |
+
"from": null,
|
| 263 |
+
"case_id": "352180ff26175653",
|
| 264 |
+
"patient_id": "24668776f28f8d4d",
|
| 265 |
+
"age": 47.0,
|
| 266 |
+
"study_type": "ct abdomen-pelvis",
|
| 267 |
+
"pathology": "tumor",
|
| 268 |
+
"split": "train",
|
| 269 |
+
"institute": "i",
|
| 270 |
+
"band_reference": "ectatic",
|
| 271 |
+
"band": "ectatic",
|
| 272 |
+
"diameter_mm": 26.570660511172846,
|
| 273 |
+
"contrast_phase": "venous",
|
| 274 |
+
"study_description": "CTA AP",
|
| 275 |
+
"rerun_knobs": "",
|
| 276 |
+
"stale_until_rerun": false
|
| 277 |
+
},
|
| 278 |
+
{
|
| 279 |
+
"row_id": "s0617",
|
| 280 |
+
"image_id": "s0617",
|
| 281 |
+
"patient_key": "s0617",
|
| 282 |
+
"kind": "index",
|
| 283 |
+
"copy": 0,
|
| 284 |
+
"new_patient_id": false,
|
| 285 |
+
"from": null,
|
| 286 |
+
"case_id": "8dd5da3b83619c24",
|
| 287 |
+
"patient_id": "148b7cf6161962e5",
|
| 288 |
+
"age": 57.0,
|
| 289 |
+
"study_type": "ct thorax-abdomen-pelvis",
|
| 290 |
+
"pathology": "no_pathology",
|
| 291 |
+
"split": "train",
|
| 292 |
+
"institute": "i",
|
| 293 |
+
"band_reference": "normal",
|
| 294 |
+
"band": "normal",
|
| 295 |
+
"diameter_mm": 21.37755832643195,
|
| 296 |
+
"contrast_phase": "venous",
|
| 297 |
+
"study_description": "CT Chest Abdomen Pelvis with Contrast",
|
| 298 |
+
"rerun_knobs": "",
|
| 299 |
+
"stale_until_rerun": false
|
| 300 |
+
},
|
| 301 |
+
{
|
| 302 |
+
"row_id": "s0473",
|
| 303 |
+
"image_id": "s0473",
|
| 304 |
+
"patient_key": "s0473",
|
| 305 |
+
"kind": "index",
|
| 306 |
+
"copy": 0,
|
| 307 |
+
"new_patient_id": false,
|
| 308 |
+
"from": null,
|
| 309 |
+
"case_id": "117db347b0254544",
|
| 310 |
+
"patient_id": "3413c4db4c69b0ff",
|
| 311 |
+
"age": 73.0,
|
| 312 |
+
"study_type": "ct thorax-abdomen",
|
| 313 |
+
"pathology": "unclear",
|
| 314 |
+
"split": "train",
|
| 315 |
+
"institute": "b",
|
| 316 |
+
"band_reference": "aaa",
|
| 317 |
+
"band": "aaa",
|
| 318 |
+
"diameter_mm": 39.75550276376844,
|
| 319 |
+
"contrast_phase": "venous",
|
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|
| 1762 |
+
"pathology": "no_pathology",
|
| 1763 |
+
"split": "train",
|
| 1764 |
+
"institute": "c",
|
| 1765 |
+
"band_reference": "normal",
|
| 1766 |
+
"band": "normal",
|
| 1767 |
+
"diameter_mm": 16.76305461424021,
|
| 1768 |
+
"contrast_phase": "venous",
|
| 1769 |
+
"study_description": "CTA AP",
|
| 1770 |
+
"rerun_knobs": "",
|
| 1771 |
+
"stale_until_rerun": false
|
| 1772 |
+
},
|
| 1773 |
+
{
|
| 1774 |
+
"row_id": "s0375",
|
| 1775 |
+
"image_id": "s0375",
|
| 1776 |
+
"patient_key": "s0375",
|
| 1777 |
+
"kind": "index",
|
| 1778 |
+
"copy": 0,
|
| 1779 |
+
"new_patient_id": false,
|
| 1780 |
+
"from": null,
|
| 1781 |
+
"case_id": "2df7280f286878d8",
|
| 1782 |
+
"patient_id": "7071f49123f61eb4",
|
| 1783 |
+
"age": 46.0,
|
| 1784 |
+
"study_type": "ct thorax-abdomen-pelvis",
|
| 1785 |
+
"pathology": "inflammation",
|
| 1786 |
+
"split": "train",
|
| 1787 |
+
"institute": "i",
|
| 1788 |
+
"band_reference": "normal",
|
| 1789 |
+
"band": "normal",
|
| 1790 |
+
"diameter_mm": 16.688319268278637,
|
| 1791 |
+
"contrast_phase": "venous",
|
| 1792 |
+
"study_description": "CT CAP w/ IV Contrast",
|
| 1793 |
+
"rerun_knobs": "",
|
| 1794 |
+
"stale_until_rerun": false
|
| 1795 |
+
},
|
| 1796 |
+
{
|
| 1797 |
+
"row_id": "s0915",
|
| 1798 |
+
"image_id": "s0915",
|
| 1799 |
+
"patient_key": "s0915",
|
| 1800 |
+
"kind": "index",
|
| 1801 |
+
"copy": 0,
|
| 1802 |
+
"new_patient_id": false,
|
| 1803 |
+
"from": null,
|
| 1804 |
+
"case_id": "62eabe0fff9a1629",
|
| 1805 |
+
"patient_id": "3936d568f0e2a233",
|
| 1806 |
+
"age": 71.0,
|
| 1807 |
+
"study_type": "ct thorax-abdomen-pelvis",
|
| 1808 |
+
"pathology": "no_pathology",
|
| 1809 |
+
"split": "train",
|
| 1810 |
+
"institute": "i",
|
| 1811 |
+
"band_reference": "aaa",
|
| 1812 |
+
"band": "aaa",
|
| 1813 |
+
"diameter_mm": 53.16483800407935,
|
| 1814 |
+
"contrast_phase": "venous",
|
| 1815 |
+
"study_description": "CTA Abdominal Aorta - AAA Surveillance",
|
| 1816 |
+
"rerun_knobs": "",
|
| 1817 |
+
"stale_until_rerun": false
|
| 1818 |
+
},
|
| 1819 |
+
{
|
| 1820 |
+
"row_id": "s1357",
|
| 1821 |
+
"image_id": "s1357",
|
| 1822 |
+
"patient_key": "s1357",
|
| 1823 |
+
"kind": "index",
|
| 1824 |
+
"copy": 0,
|
| 1825 |
+
"new_patient_id": false,
|
| 1826 |
+
"from": null,
|
| 1827 |
+
"case_id": "da3f0e4f31cf619e",
|
| 1828 |
+
"patient_id": "63e54c1a4f1242ad",
|
| 1829 |
+
"age": 82.0,
|
| 1830 |
+
"study_type": "ct hip right",
|
| 1831 |
+
"pathology": "trauma",
|
| 1832 |
+
"split": "test",
|
| 1833 |
+
"institute": "i",
|
| 1834 |
+
"band_reference": "normal",
|
| 1835 |
+
"band": "normal",
|
| 1836 |
+
"diameter_mm": 24.748737341529164,
|
| 1837 |
+
"contrast_phase": "non-contrast",
|
| 1838 |
+
"study_description": "CT Abdomen Pelvis without Contrast",
|
| 1839 |
+
"rerun_knobs": "",
|
| 1840 |
+
"stale_until_rerun": false
|
| 1841 |
+
},
|
| 1842 |
+
{
|
| 1843 |
+
"row_id": "s1022",
|
| 1844 |
+
"image_id": "s1022",
|
| 1845 |
+
"patient_key": "s1022",
|
| 1846 |
+
"kind": "index",
|
| 1847 |
+
"copy": 0,
|
| 1848 |
+
"new_patient_id": false,
|
| 1849 |
+
"from": null,
|
| 1850 |
+
"case_id": "f77678857025758c",
|
| 1851 |
+
"patient_id": "a6a534989b42d787",
|
| 1852 |
+
"age": 87.0,
|
| 1853 |
+
"study_type": "ct aortic valve",
|
| 1854 |
+
"pathology": "no_pathology",
|
| 1855 |
+
"split": "train",
|
| 1856 |
+
"institute": "i",
|
| 1857 |
+
"band_reference": "normal",
|
| 1858 |
+
"band": "normal",
|
| 1859 |
+
"diameter_mm": 21.95449840010015,
|
| 1860 |
+
"contrast_phase": "arterial",
|
| 1861 |
+
"study_description": "CTA TAVR Planning Chest/Abd/Pelvis",
|
| 1862 |
+
"rerun_knobs": "",
|
| 1863 |
+
"stale_until_rerun": false
|
| 1864 |
+
},
|
| 1865 |
+
{
|
| 1866 |
+
"row_id": "s1391",
|
| 1867 |
+
"image_id": "s1391",
|
| 1868 |
+
"patient_key": "s1391",
|
| 1869 |
+
"kind": "index",
|
| 1870 |
+
"copy": 0,
|
| 1871 |
+
"new_patient_id": false,
|
| 1872 |
+
"from": null,
|
| 1873 |
+
"case_id": "0d672e83258f5f90",
|
| 1874 |
+
"patient_id": "7e112506d22a68a6",
|
| 1875 |
+
"age": 65.0,
|
| 1876 |
+
"study_type": "ct angiography abdomen-pelvis",
|
| 1877 |
+
"pathology": "bleeding",
|
| 1878 |
+
"split": "train",
|
| 1879 |
+
"institute": "i",
|
| 1880 |
+
"band_reference": "normal",
|
| 1881 |
+
"band": "normal",
|
| 1882 |
+
"diameter_mm": 22.825424421026653,
|
| 1883 |
+
"contrast_phase": "non-contrast",
|
| 1884 |
+
"study_description": "CT Abdomen Pelvis without Contrast",
|
| 1885 |
+
"rerun_knobs": "",
|
| 1886 |
+
"stale_until_rerun": false
|
| 1887 |
+
},
|
| 1888 |
+
{
|
| 1889 |
+
"row_id": "s0895",
|
| 1890 |
+
"image_id": "s0895",
|
| 1891 |
+
"patient_key": "s0895",
|
| 1892 |
+
"kind": "index",
|
| 1893 |
+
"copy": 0,
|
| 1894 |
+
"new_patient_id": false,
|
| 1895 |
+
"from": null,
|
| 1896 |
+
"case_id": "2c302fc51eb1b64f",
|
| 1897 |
+
"patient_id": "73f2c2cb4a975777",
|
| 1898 |
+
"age": 56.0,
|
| 1899 |
+
"study_type": "ct angiography neck-thx-abd-pelvis-leg",
|
| 1900 |
+
"pathology": "other",
|
| 1901 |
+
"split": "train",
|
| 1902 |
+
"institute": "i",
|
| 1903 |
+
"band_reference": "normal",
|
| 1904 |
+
"band": "normal",
|
| 1905 |
+
"diameter_mm": 17.4928556845359,
|
| 1906 |
+
"contrast_phase": "arterial",
|
| 1907 |
+
"study_description": "CTA Aorta Complete",
|
| 1908 |
+
"rerun_knobs": "",
|
| 1909 |
+
"stale_until_rerun": false
|
| 1910 |
+
},
|
| 1911 |
+
{
|
| 1912 |
+
"row_id": "s1046",
|
| 1913 |
+
"image_id": "s1046",
|
| 1914 |
+
"patient_key": "s1046",
|
| 1915 |
+
"kind": "index",
|
| 1916 |
+
"copy": 0,
|
| 1917 |
+
"new_patient_id": false,
|
| 1918 |
+
"from": null,
|
| 1919 |
+
"case_id": "467a1bce5ad86985",
|
| 1920 |
+
"patient_id": "c3c09103564f76fa",
|
| 1921 |
+
"age": 72.0,
|
| 1922 |
+
"study_type": "ct thorax-abdomen-pelvis",
|
| 1923 |
+
"pathology": "no_pathology",
|
| 1924 |
+
"split": "val",
|
| 1925 |
+
"institute": "i",
|
| 1926 |
+
"band_reference": "normal",
|
| 1927 |
+
"band": "normal",
|
| 1928 |
+
"diameter_mm": 23.08679276123039,
|
| 1929 |
+
"contrast_phase": "venous",
|
| 1930 |
+
"study_description": "CT Chest Abdomen Pelvis with Contrast",
|
| 1931 |
+
"rerun_knobs": "",
|
| 1932 |
+
"stale_until_rerun": false
|
| 1933 |
+
},
|
| 1934 |
+
{
|
| 1935 |
+
"row_id": "s0495",
|
| 1936 |
+
"image_id": "s0495",
|
| 1937 |
+
"patient_key": "s0495",
|
| 1938 |
+
"kind": "index",
|
| 1939 |
+
"copy": 0,
|
| 1940 |
+
"new_patient_id": false,
|
| 1941 |
+
"from": null,
|
| 1942 |
+
"case_id": "df1f79c95a0a8d86",
|
| 1943 |
+
"patient_id": "3638080a4c8e90be",
|
| 1944 |
+
"age": 64.0,
|
| 1945 |
+
"study_type": "ct abdomen",
|
| 1946 |
+
"pathology": "tumor",
|
| 1947 |
+
"split": "train",
|
| 1948 |
+
"institute": "a",
|
| 1949 |
+
"band_reference": "normal",
|
| 1950 |
+
"band": "normal",
|
| 1951 |
+
"diameter_mm": 15.811388300841896,
|
| 1952 |
+
"contrast_phase": "venous",
|
| 1953 |
+
"study_description": "CTA Abdominal Aorta",
|
| 1954 |
+
"rerun_knobs": "",
|
| 1955 |
+
"stale_until_rerun": false
|
| 1956 |
+
},
|
| 1957 |
+
{
|
| 1958 |
+
"row_id": "s0218",
|
| 1959 |
+
"image_id": "s0218",
|
| 1960 |
+
"patient_key": "s0218",
|
| 1961 |
+
"kind": "index",
|
| 1962 |
+
"copy": 0,
|
| 1963 |
+
"new_patient_id": false,
|
| 1964 |
+
"from": null,
|
| 1965 |
+
"case_id": "51af8d5d62a2d0f9",
|
| 1966 |
+
"patient_id": "d93a5a4e5509c2b3",
|
| 1967 |
+
"age": 69.0,
|
| 1968 |
+
"study_type": "ct abdomen-pelvis",
|
| 1969 |
+
"pathology": "no_pathology",
|
| 1970 |
+
"split": "train",
|
| 1971 |
+
"institute": "i",
|
| 1972 |
+
"band_reference": "normal",
|
| 1973 |
+
"band": "normal",
|
| 1974 |
+
"diameter_mm": 19.4164878389476,
|
| 1975 |
+
"contrast_phase": "venous",
|
| 1976 |
+
"study_description": "CTA AP",
|
| 1977 |
+
"rerun_knobs": "",
|
| 1978 |
+
"stale_until_rerun": false
|
| 1979 |
+
},
|
| 1980 |
+
{
|
| 1981 |
+
"row_id": "s0571",
|
| 1982 |
+
"image_id": "s0571",
|
| 1983 |
+
"patient_key": "s0571",
|
| 1984 |
+
"kind": "index",
|
| 1985 |
+
"copy": 0,
|
| 1986 |
+
"new_patient_id": false,
|
| 1987 |
+
"from": null,
|
| 1988 |
+
"case_id": "d2427ddbc460c09e",
|
| 1989 |
+
"patient_id": "6df5866725e60e7a",
|
| 1990 |
+
"age": 55.0,
|
| 1991 |
+
"study_type": "ct thorax-abdomen-pelvis",
|
| 1992 |
+
"pathology": "no_pathology",
|
| 1993 |
+
"split": "train",
|
| 1994 |
+
"institute": "i",
|
| 1995 |
+
"band_reference": "normal",
|
| 1996 |
+
"band": "normal",
|
| 1997 |
+
"diameter_mm": 17.755280904564703,
|
| 1998 |
+
"contrast_phase": "venous",
|
| 1999 |
+
"study_description": "CT Chest Abdomen Pelvis with Contrast",
|
| 2000 |
+
"rerun_knobs": "",
|
| 2001 |
+
"stale_until_rerun": false
|
| 2002 |
+
},
|
| 2003 |
+
{
|
| 2004 |
+
"row_id": "s0700",
|
| 2005 |
+
"image_id": "s0700",
|
| 2006 |
+
"patient_key": "s0700",
|
| 2007 |
+
"kind": "index",
|
| 2008 |
+
"copy": 0,
|
| 2009 |
+
"new_patient_id": false,
|
| 2010 |
+
"from": null,
|
| 2011 |
+
"case_id": "15cbba64a2edac4b",
|
| 2012 |
+
"patient_id": "a7c3105ef025627d",
|
| 2013 |
+
"age": 93.0,
|
| 2014 |
+
"study_type": "ct spine",
|
| 2015 |
+
"pathology": "unclear",
|
| 2016 |
+
"split": "train",
|
| 2017 |
+
"institute": "b",
|
| 2018 |
+
"band_reference": "normal",
|
| 2019 |
+
"band": "normal",
|
| 2020 |
+
"diameter_mm": 24.70323865407125,
|
| 2021 |
+
"contrast_phase": "non-contrast",
|
| 2022 |
+
"study_description": "CT Abdomen Pelvis without Contrast",
|
| 2023 |
+
"rerun_knobs": "",
|
| 2024 |
+
"stale_until_rerun": false
|
| 2025 |
+
},
|
| 2026 |
+
{
|
| 2027 |
+
"row_id": "s0500",
|
| 2028 |
+
"image_id": "s0500",
|
| 2029 |
+
"patient_key": "s0500",
|
| 2030 |
+
"kind": "index",
|
| 2031 |
+
"copy": 0,
|
| 2032 |
+
"new_patient_id": false,
|
| 2033 |
+
"from": null,
|
| 2034 |
+
"case_id": "272591408469599c",
|
| 2035 |
+
"patient_id": "65ade74e14264942",
|
| 2036 |
+
"age": 49.0,
|
| 2037 |
+
"study_type": "ct neck-thorax-abdomen-pelvis",
|
| 2038 |
+
"pathology": "unclear",
|
| 2039 |
+
"split": "train",
|
| 2040 |
+
"institute": "b",
|
| 2041 |
+
"band_reference": "normal",
|
| 2042 |
+
"band": "normal",
|
| 2043 |
+
"diameter_mm": 20.670026608594387,
|
| 2044 |
+
"contrast_phase": "venous",
|
| 2045 |
+
"study_description": "CT Staging Neck/CAP",
|
| 2046 |
+
"rerun_knobs": "",
|
| 2047 |
+
"stale_until_rerun": false
|
| 2048 |
+
}
|
| 2049 |
+
],
|
| 2050 |
+
"public_name": "hospital_g",
|
| 2051 |
+
"release_key_fingerprint": "88dd7eeed9a0"
|
| 2052 |
+
}
|
keys/practice/README.md
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# Practice answer keys
|
| 2 |
+
|
| 3 |
+
One file per practice hospital: the flaws we put in (kind, severity, a plain description, and the evidence a correct find cites), plus reference measures comparing each hospital with hospital_a, the clean reference.
|
| 4 |
+
|
| 5 |
+
For each measure: `value` is what this hospital shows; `chance_p95` and `chance_p99` are what two clean samples of the same size show by chance 95% and 99% of the time; `verdict` is our call (within chance, borderline, weak, strong). A value above `chance_p99` is unlikely to be chance.
|
| 6 |
+
|
| 7 |
+
Patients shared across practice hospitals under different ids: hospital_b & hospital_e: 2
|
| 8 |
+
|
| 9 |
+
## Measures
|
| 10 |
+
|
| 11 |
+
- `aaa_prev_diff`: AAA prevalence difference (= EMD on the binary label)
|
| 12 |
+
- `size_class_hellinger`: Hellinger distance over aaa_size_class
|
| 13 |
+
- `diameter_w1_mm`: W1 over max_aortic_diameter_mm, mm
|
| 14 |
+
- `age_band_tv`: TV over age band
|
| 15 |
+
- `sex_tv`: TV over sex
|
| 16 |
+
- `phase_tv`: TV over contrast phase
|
| 17 |
+
- `slice_class_tv`: TV over slice_thickness_class
|
| 18 |
+
- `vendor_tv`: TV over scanner_vendor
|
| 19 |
+
- `feature_c2st_auc`: classifier two-sample AUC, aorta HU and log organ volumes
|
| 20 |
+
- `embed_c2st_auc`: classifier two-sample AUC, embedding PCA-32
|
| 21 |
+
- `embed_mmd2`: unbiased MMD^2, RBF, embedding PCA-32
|
| 22 |
+
- `cmi_s_y_given_x`: I(S;Y|X) in nats, Y = aaa, X = baseline predicted diameter
|
| 23 |
+
- `label_pred_w1_mm`: W1 over (label diameter - baseline predicted diameter), mm
|
| 24 |
+
- `dice_gap`: |mean baseline aorta Dice difference|
|
| 25 |
+
- `aaa_balacc_gap`: |baseline AAA balanced accuracy difference|
|
| 26 |
+
- `shortcut_max_phi`: max phi between one study_description or protocol_name value and aaa (values on 3 or more rows)
|
| 27 |
+
- `shortcut_u`: I(study_description; aaa) / H(aaa), plug-in (uncertainty coefficient, so prevalence alone does not raise it)
|
| 28 |
+
- `neff_deficit_pid`: 1 - n_eff / n, ICC of diameter by released patient_id
|
| 29 |
+
- `neff_deficit_emb`: 1 - n_eff / n, ICC of diameter by near-duplicate embedding cluster
|
| 30 |
+
- `near_dup_rate`: share of rows with a within-hospital embedding neighbour closer than 0.25
|
keys/practice/hospital_a.json
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"findings": [
|
| 3 |
+
{
|
| 4 |
+
"description": "Stratified random sample, one scan per patient. The IID control and the reference for every other hospital.",
|
| 5 |
+
"evidence_expected": "Measures sit inside their split-half nulls; no axis stands out.",
|
| 6 |
+
"kind": "none",
|
| 7 |
+
"severity": "none"
|
| 8 |
+
}
|
| 9 |
+
],
|
| 10 |
+
"hospital": "hospital_a"
|
| 11 |
+
}
|
keys/practice/hospital_b.json
ADDED
|
@@ -0,0 +1,143 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"findings": [
|
| 3 |
+
{
|
| 4 |
+
"description": "Many patients scanned repeatedly, some under fresh IDs. Looks like 80 cases; holds far fewer independent ones.",
|
| 5 |
+
"evidence_expected": "Near-duplicate embeddings within the hospital, ICC and design effect, n_eff well below n, naive CIs too narrow.",
|
| 6 |
+
"kind": "clustering",
|
| 7 |
+
"severity": "strong"
|
| 8 |
+
},
|
| 9 |
+
{
|
| 10 |
+
"description": "A handful of patients also appear at hospital_e under new IDs.",
|
| 11 |
+
"evidence_expected": "Cross-hospital near-duplicate pairs; a hospital-level split would leak.",
|
| 12 |
+
"kind": "clustering",
|
| 13 |
+
"severity": "weak"
|
| 14 |
+
}
|
| 15 |
+
],
|
| 16 |
+
"hospital": "hospital_b",
|
| 17 |
+
"reference_measures": {
|
| 18 |
+
"compared_with": "hospital_a",
|
| 19 |
+
"measures": {
|
| 20 |
+
"aaa_balacc_gap": {
|
| 21 |
+
"chance_p95": 0.16666666666666674,
|
| 22 |
+
"chance_p99": 0.2500454545454545,
|
| 23 |
+
"value": 0.015873015873015817,
|
| 24 |
+
"verdict": "within chance"
|
| 25 |
+
},
|
| 26 |
+
"aaa_prev_diff": {
|
| 27 |
+
"chance_p95": 0.08249999999999999,
|
| 28 |
+
"chance_p99": 0.105025,
|
| 29 |
+
"value": 0.0025000000000000022,
|
| 30 |
+
"verdict": "within chance"
|
| 31 |
+
},
|
| 32 |
+
"age_band_tv": {
|
| 33 |
+
"chance_p95": 0.2251249999999999,
|
| 34 |
+
"chance_p99": 0.25749999999999995,
|
| 35 |
+
"value": 0.10750000000000001,
|
| 36 |
+
"verdict": "within chance"
|
| 37 |
+
},
|
| 38 |
+
"cmi_s_y_given_x": {
|
| 39 |
+
"chance_p95": 0.0017412381135585482,
|
| 40 |
+
"chance_p99": 0.00344862445271839,
|
| 41 |
+
"value": -0.0003646204882545065,
|
| 42 |
+
"verdict": "within chance"
|
| 43 |
+
},
|
| 44 |
+
"diameter_w1_mm": {
|
| 45 |
+
"chance_p95": 2.222422553198033,
|
| 46 |
+
"chance_p99": 3.0558571029693504,
|
| 47 |
+
"value": 1.6583997089766074,
|
| 48 |
+
"verdict": "within chance"
|
| 49 |
+
},
|
| 50 |
+
"dice_gap": {
|
| 51 |
+
"chance_p95": 0.00622128738602638,
|
| 52 |
+
"chance_p99": 0.007824171785814063,
|
| 53 |
+
"value": 0.004095622399570842,
|
| 54 |
+
"verdict": "within chance"
|
| 55 |
+
},
|
| 56 |
+
"embed_c2st_auc": {
|
| 57 |
+
"chance_p95": 0.5851531249999999,
|
| 58 |
+
"chance_p99": 0.624419375,
|
| 59 |
+
"value": 0.64425,
|
| 60 |
+
"verdict": "weak"
|
| 61 |
+
},
|
| 62 |
+
"embed_mmd2": {
|
| 63 |
+
"chance_p95": 0.003110258204608671,
|
| 64 |
+
"chance_p99": 0.004315590781960012,
|
| 65 |
+
"value": 0.008291255671871944,
|
| 66 |
+
"verdict": "weak"
|
| 67 |
+
},
|
| 68 |
+
"feature_c2st_auc": {
|
| 69 |
+
"chance_p95": 0.5812312499999999,
|
| 70 |
+
"chance_p99": 0.61777375,
|
| 71 |
+
"value": 0.385625,
|
| 72 |
+
"verdict": "within chance"
|
| 73 |
+
},
|
| 74 |
+
"label_pred_w1_mm": {
|
| 75 |
+
"chance_p95": 0.464911853101532,
|
| 76 |
+
"chance_p99": 0.5753052952284602,
|
| 77 |
+
"value": 0.32971442293168646,
|
| 78 |
+
"verdict": "within chance"
|
| 79 |
+
},
|
| 80 |
+
"near_dup_rate": {
|
| 81 |
+
"chance_p95": 0.0,
|
| 82 |
+
"chance_p99": 0.0,
|
| 83 |
+
"value": 0.75,
|
| 84 |
+
"verdict": "strong"
|
| 85 |
+
},
|
| 86 |
+
"neff_deficit_emb": {
|
| 87 |
+
"chance_p95": 0.0,
|
| 88 |
+
"chance_p99": 0.0,
|
| 89 |
+
"value": 0.5988606323301549,
|
| 90 |
+
"verdict": "strong"
|
| 91 |
+
},
|
| 92 |
+
"neff_deficit_pid": {
|
| 93 |
+
"chance_p95": 0.0,
|
| 94 |
+
"chance_p99": 0.0,
|
| 95 |
+
"value": 0.3837465103580684,
|
| 96 |
+
"verdict": "strong"
|
| 97 |
+
},
|
| 98 |
+
"phase_tv": {
|
| 99 |
+
"chance_p95": 0.14512499999999992,
|
| 100 |
+
"chance_p99": 0.1751499999999999,
|
| 101 |
+
"value": 0.06000000000000001,
|
| 102 |
+
"verdict": "within chance"
|
| 103 |
+
},
|
| 104 |
+
"sex_tv": {
|
| 105 |
+
"chance_p95": 0.15,
|
| 106 |
+
"chance_p99": 0.1725,
|
| 107 |
+
"value": 0.014999999999999958,
|
| 108 |
+
"verdict": "within chance"
|
| 109 |
+
},
|
| 110 |
+
"shortcut_max_phi": {
|
| 111 |
+
"chance_p95": 0.8056815791722832,
|
| 112 |
+
"chance_p99": 0.8885233166386386,
|
| 113 |
+
"value": 0.3391533656562534,
|
| 114 |
+
"verdict": "within chance"
|
| 115 |
+
},
|
| 116 |
+
"shortcut_u": {
|
| 117 |
+
"chance_p95": 0.9368951662102973,
|
| 118 |
+
"chance_p99": 1.0000000000000002,
|
| 119 |
+
"value": 0.5441851217481756,
|
| 120 |
+
"verdict": "within chance"
|
| 121 |
+
},
|
| 122 |
+
"size_class_hellinger": {
|
| 123 |
+
"chance_p95": 0.1501256242747197,
|
| 124 |
+
"chance_p99": 0.16974357552479452,
|
| 125 |
+
"value": 0.10241327124318884,
|
| 126 |
+
"verdict": "within chance"
|
| 127 |
+
},
|
| 128 |
+
"slice_class_tv": {
|
| 129 |
+
"chance_p95": 0.1551249999999999,
|
| 130 |
+
"chance_p99": 0.21764999999999984,
|
| 131 |
+
"value": 0.135,
|
| 132 |
+
"verdict": "within chance"
|
| 133 |
+
},
|
| 134 |
+
"vendor_tv": {
|
| 135 |
+
"chance_p95": 0.0857766323024055,
|
| 136 |
+
"chance_p99": 0.12228137651821862,
|
| 137 |
+
"value": 0.16695675458562056,
|
| 138 |
+
"verdict": "weak"
|
| 139 |
+
}
|
| 140 |
+
},
|
| 141 |
+
"n": 80
|
| 142 |
+
}
|
| 143 |
+
}
|
keys/practice/hospital_c.json
ADDED
|
@@ -0,0 +1,137 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"findings": [
|
| 3 |
+
{
|
| 4 |
+
"description": "Thick slices and venous phase only. Same patients-on-paper as the reference, scanned differently.",
|
| 5 |
+
"evidence_expected": "Label prior and demographics match the reference (EMD and Hellinger near zero) while slice thickness and the embeddings shift clearly and baseline Dice drops a little. Aorta HU moves only slightly.",
|
| 6 |
+
"kind": "acquisition",
|
| 7 |
+
"severity": "strong"
|
| 8 |
+
}
|
| 9 |
+
],
|
| 10 |
+
"hospital": "hospital_c",
|
| 11 |
+
"reference_measures": {
|
| 12 |
+
"compared_with": "hospital_a",
|
| 13 |
+
"measures": {
|
| 14 |
+
"aaa_balacc_gap": {
|
| 15 |
+
"chance_p95": 0.16666666666666674,
|
| 16 |
+
"chance_p99": 0.2500454545454545,
|
| 17 |
+
"value": 0.015873015873015817,
|
| 18 |
+
"verdict": "within chance"
|
| 19 |
+
},
|
| 20 |
+
"aaa_prev_diff": {
|
| 21 |
+
"chance_p95": 0.08249999999999999,
|
| 22 |
+
"chance_p99": 0.105025,
|
| 23 |
+
"value": 0.0025000000000000022,
|
| 24 |
+
"verdict": "within chance"
|
| 25 |
+
},
|
| 26 |
+
"age_band_tv": {
|
| 27 |
+
"chance_p95": 0.2251249999999999,
|
| 28 |
+
"chance_p99": 0.25749999999999995,
|
| 29 |
+
"value": 0.012500000000000002,
|
| 30 |
+
"verdict": "within chance"
|
| 31 |
+
},
|
| 32 |
+
"cmi_s_y_given_x": {
|
| 33 |
+
"chance_p95": 0.0017412381135585482,
|
| 34 |
+
"chance_p99": 0.00344862445271839,
|
| 35 |
+
"value": -0.0008128277899579761,
|
| 36 |
+
"verdict": "within chance"
|
| 37 |
+
},
|
| 38 |
+
"diameter_w1_mm": {
|
| 39 |
+
"chance_p95": 2.222422553198033,
|
| 40 |
+
"chance_p99": 3.0558571029693504,
|
| 41 |
+
"value": 0.7667986187448365,
|
| 42 |
+
"verdict": "within chance"
|
| 43 |
+
},
|
| 44 |
+
"dice_gap": {
|
| 45 |
+
"chance_p95": 0.00622128738602638,
|
| 46 |
+
"chance_p99": 0.007824171785814063,
|
| 47 |
+
"value": 0.013440861705116935,
|
| 48 |
+
"verdict": "weak"
|
| 49 |
+
},
|
| 50 |
+
"embed_c2st_auc": {
|
| 51 |
+
"chance_p95": 0.5851531249999999,
|
| 52 |
+
"chance_p99": 0.624419375,
|
| 53 |
+
"value": 0.757875,
|
| 54 |
+
"verdict": "strong"
|
| 55 |
+
},
|
| 56 |
+
"embed_mmd2": {
|
| 57 |
+
"chance_p95": 0.003110258204608671,
|
| 58 |
+
"chance_p99": 0.004315590781960012,
|
| 59 |
+
"value": 0.025361603605288163,
|
| 60 |
+
"verdict": "strong"
|
| 61 |
+
},
|
| 62 |
+
"feature_c2st_auc": {
|
| 63 |
+
"chance_p95": 0.5812312499999999,
|
| 64 |
+
"chance_p99": 0.61777375,
|
| 65 |
+
"value": 0.610625,
|
| 66 |
+
"verdict": "borderline"
|
| 67 |
+
},
|
| 68 |
+
"label_pred_w1_mm": {
|
| 69 |
+
"chance_p95": 0.464911853101532,
|
| 70 |
+
"chance_p99": 0.5753052952284602,
|
| 71 |
+
"value": 0.26524056538777296,
|
| 72 |
+
"verdict": "within chance"
|
| 73 |
+
},
|
| 74 |
+
"near_dup_rate": {
|
| 75 |
+
"chance_p95": 0.0,
|
| 76 |
+
"chance_p99": 0.0,
|
| 77 |
+
"value": 0.0,
|
| 78 |
+
"verdict": "within chance"
|
| 79 |
+
},
|
| 80 |
+
"neff_deficit_emb": {
|
| 81 |
+
"chance_p95": 0.0,
|
| 82 |
+
"chance_p99": 0.0,
|
| 83 |
+
"value": 0.0,
|
| 84 |
+
"verdict": "within chance"
|
| 85 |
+
},
|
| 86 |
+
"neff_deficit_pid": {
|
| 87 |
+
"chance_p95": 0.0,
|
| 88 |
+
"chance_p99": 0.0,
|
| 89 |
+
"value": 0.0,
|
| 90 |
+
"verdict": "within chance"
|
| 91 |
+
},
|
| 92 |
+
"phase_tv": {
|
| 93 |
+
"chance_p95": 0.14512499999999992,
|
| 94 |
+
"chance_p99": 0.1751499999999999,
|
| 95 |
+
"value": 0.4,
|
| 96 |
+
"verdict": "strong"
|
| 97 |
+
},
|
| 98 |
+
"sex_tv": {
|
| 99 |
+
"chance_p95": 0.15,
|
| 100 |
+
"chance_p99": 0.1725,
|
| 101 |
+
"value": 0.0024999999999999745,
|
| 102 |
+
"verdict": "within chance"
|
| 103 |
+
},
|
| 104 |
+
"shortcut_max_phi": {
|
| 105 |
+
"chance_p95": 0.8056815791722832,
|
| 106 |
+
"chance_p99": 0.8885233166386386,
|
| 107 |
+
"value": 0.2477308382496682,
|
| 108 |
+
"verdict": "within chance"
|
| 109 |
+
},
|
| 110 |
+
"shortcut_u": {
|
| 111 |
+
"chance_p95": 0.9368951662102973,
|
| 112 |
+
"chance_p99": 1.0000000000000002,
|
| 113 |
+
"value": 0.5863806087251241,
|
| 114 |
+
"verdict": "within chance"
|
| 115 |
+
},
|
| 116 |
+
"size_class_hellinger": {
|
| 117 |
+
"chance_p95": 0.1501256242747197,
|
| 118 |
+
"chance_p99": 0.16974357552479452,
|
| 119 |
+
"value": 0.021967824367345092,
|
| 120 |
+
"verdict": "within chance"
|
| 121 |
+
},
|
| 122 |
+
"slice_class_tv": {
|
| 123 |
+
"chance_p95": 0.1551249999999999,
|
| 124 |
+
"chance_p99": 0.21764999999999984,
|
| 125 |
+
"value": 0.89,
|
| 126 |
+
"verdict": "strong"
|
| 127 |
+
},
|
| 128 |
+
"vendor_tv": {
|
| 129 |
+
"chance_p95": 0.0857766323024055,
|
| 130 |
+
"chance_p99": 0.12228137651821862,
|
| 131 |
+
"value": 0.02654639175257731,
|
| 132 |
+
"verdict": "within chance"
|
| 133 |
+
}
|
| 134 |
+
},
|
| 135 |
+
"n": 80
|
| 136 |
+
}
|
| 137 |
+
}
|
keys/practice/hospital_d.json
ADDED
|
@@ -0,0 +1,143 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"findings": [
|
| 3 |
+
{
|
| 4 |
+
"description": "Far more aneurysms than the reference, as at a specialist vascular practice.",
|
| 5 |
+
"evidence_expected": "Higher AAA prevalence and a diameter distribution shifted right (W1 in mm).",
|
| 6 |
+
"kind": "label_prior",
|
| 7 |
+
"severity": "strong"
|
| 8 |
+
},
|
| 9 |
+
{
|
| 10 |
+
"description": "Older and more male, moving together with prevalence and more arterial-phase imaging.",
|
| 11 |
+
"evidence_expected": "The honest answer names the confounding and says what cannot be separated, rather than claiming a clean decomposition.",
|
| 12 |
+
"kind": "population",
|
| 13 |
+
"severity": "strong"
|
| 14 |
+
}
|
| 15 |
+
],
|
| 16 |
+
"hospital": "hospital_d",
|
| 17 |
+
"reference_measures": {
|
| 18 |
+
"compared_with": "hospital_a",
|
| 19 |
+
"measures": {
|
| 20 |
+
"aaa_balacc_gap": {
|
| 21 |
+
"chance_p95": 0.16666666666666674,
|
| 22 |
+
"chance_p99": 0.2500454545454545,
|
| 23 |
+
"value": 0.002777777777777768,
|
| 24 |
+
"verdict": "within chance"
|
| 25 |
+
},
|
| 26 |
+
"aaa_prev_diff": {
|
| 27 |
+
"chance_p95": 0.08249999999999999,
|
| 28 |
+
"chance_p99": 0.105025,
|
| 29 |
+
"value": 0.16,
|
| 30 |
+
"verdict": "weak"
|
| 31 |
+
},
|
| 32 |
+
"age_band_tv": {
|
| 33 |
+
"chance_p95": 0.2251249999999999,
|
| 34 |
+
"chance_p99": 0.25749999999999995,
|
| 35 |
+
"value": 0.4175,
|
| 36 |
+
"verdict": "strong"
|
| 37 |
+
},
|
| 38 |
+
"cmi_s_y_given_x": {
|
| 39 |
+
"chance_p95": 0.0017412381135585482,
|
| 40 |
+
"chance_p99": 0.00344862445271839,
|
| 41 |
+
"value": -0.00029198949655167563,
|
| 42 |
+
"verdict": "within chance"
|
| 43 |
+
},
|
| 44 |
+
"diameter_w1_mm": {
|
| 45 |
+
"chance_p95": 2.222422553198033,
|
| 46 |
+
"chance_p99": 3.0558571029693504,
|
| 47 |
+
"value": 6.522980006480996,
|
| 48 |
+
"verdict": "strong"
|
| 49 |
+
},
|
| 50 |
+
"dice_gap": {
|
| 51 |
+
"chance_p95": 0.00622128738602638,
|
| 52 |
+
"chance_p99": 0.007824171785814063,
|
| 53 |
+
"value": 0.0027557173710358596,
|
| 54 |
+
"verdict": "within chance"
|
| 55 |
+
},
|
| 56 |
+
"embed_c2st_auc": {
|
| 57 |
+
"chance_p95": 0.5851531249999999,
|
| 58 |
+
"chance_p99": 0.624419375,
|
| 59 |
+
"value": 0.61225,
|
| 60 |
+
"verdict": "borderline"
|
| 61 |
+
},
|
| 62 |
+
"embed_mmd2": {
|
| 63 |
+
"chance_p95": 0.003110258204608671,
|
| 64 |
+
"chance_p99": 0.004315590781960012,
|
| 65 |
+
"value": 0.007755568412725511,
|
| 66 |
+
"verdict": "weak"
|
| 67 |
+
},
|
| 68 |
+
"feature_c2st_auc": {
|
| 69 |
+
"chance_p95": 0.5812312499999999,
|
| 70 |
+
"chance_p99": 0.61777375,
|
| 71 |
+
"value": 0.76075,
|
| 72 |
+
"verdict": "strong"
|
| 73 |
+
},
|
| 74 |
+
"label_pred_w1_mm": {
|
| 75 |
+
"chance_p95": 0.464911853101532,
|
| 76 |
+
"chance_p99": 0.5753052952284602,
|
| 77 |
+
"value": 0.5700975585828539,
|
| 78 |
+
"verdict": "borderline"
|
| 79 |
+
},
|
| 80 |
+
"near_dup_rate": {
|
| 81 |
+
"chance_p95": 0.0,
|
| 82 |
+
"chance_p99": 0.0,
|
| 83 |
+
"value": 0.0,
|
| 84 |
+
"verdict": "within chance"
|
| 85 |
+
},
|
| 86 |
+
"neff_deficit_emb": {
|
| 87 |
+
"chance_p95": 0.0,
|
| 88 |
+
"chance_p99": 0.0,
|
| 89 |
+
"value": 0.0,
|
| 90 |
+
"verdict": "within chance"
|
| 91 |
+
},
|
| 92 |
+
"neff_deficit_pid": {
|
| 93 |
+
"chance_p95": 0.0,
|
| 94 |
+
"chance_p99": 0.0,
|
| 95 |
+
"value": 0.0,
|
| 96 |
+
"verdict": "within chance"
|
| 97 |
+
},
|
| 98 |
+
"phase_tv": {
|
| 99 |
+
"chance_p95": 0.14512499999999992,
|
| 100 |
+
"chance_p99": 0.1751499999999999,
|
| 101 |
+
"value": 0.5599999999999999,
|
| 102 |
+
"verdict": "strong"
|
| 103 |
+
},
|
| 104 |
+
"sex_tv": {
|
| 105 |
+
"chance_p95": 0.15,
|
| 106 |
+
"chance_p99": 0.1725,
|
| 107 |
+
"value": 0.18999999999999997,
|
| 108 |
+
"verdict": "weak"
|
| 109 |
+
},
|
| 110 |
+
"shortcut_max_phi": {
|
| 111 |
+
"chance_p95": 0.8056815791722832,
|
| 112 |
+
"chance_p99": 0.8885233166386386,
|
| 113 |
+
"value": 0.48507125007266594,
|
| 114 |
+
"verdict": "within chance"
|
| 115 |
+
},
|
| 116 |
+
"shortcut_u": {
|
| 117 |
+
"chance_p95": 0.9368951662102973,
|
| 118 |
+
"chance_p99": 1.0000000000000002,
|
| 119 |
+
"value": 0.5317518337835133,
|
| 120 |
+
"verdict": "within chance"
|
| 121 |
+
},
|
| 122 |
+
"size_class_hellinger": {
|
| 123 |
+
"chance_p95": 0.1501256242747197,
|
| 124 |
+
"chance_p99": 0.16974357552479452,
|
| 125 |
+
"value": 0.16829488599721648,
|
| 126 |
+
"verdict": "borderline"
|
| 127 |
+
},
|
| 128 |
+
"slice_class_tv": {
|
| 129 |
+
"chance_p95": 0.1551249999999999,
|
| 130 |
+
"chance_p99": 0.21764999999999984,
|
| 131 |
+
"value": 0.1275,
|
| 132 |
+
"verdict": "within chance"
|
| 133 |
+
},
|
| 134 |
+
"vendor_tv": {
|
| 135 |
+
"chance_p95": 0.0857766323024055,
|
| 136 |
+
"chance_p99": 0.12228137651821862,
|
| 137 |
+
"value": 0.04850647634152787,
|
| 138 |
+
"verdict": "within chance"
|
| 139 |
+
}
|
| 140 |
+
},
|
| 141 |
+
"n": 80
|
| 142 |
+
}
|
| 143 |
+
}
|
keys/practice/hospital_e.json
ADDED
|
@@ -0,0 +1,137 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"findings": [
|
| 3 |
+
{
|
| 4 |
+
"description": "Measures the lumen rather than the outer wall and calls AAA at 2.5 cm. Same images, different truth.",
|
| 5 |
+
"evidence_expected": "P(Y) and P(X) match the reference, but the image-to-label relationship differs (I(S;Y|X) > 0; diameter vs image features disagree on matched cases).",
|
| 6 |
+
"kind": "labeling_convention",
|
| 7 |
+
"severity": "strong"
|
| 8 |
+
}
|
| 9 |
+
],
|
| 10 |
+
"hospital": "hospital_e",
|
| 11 |
+
"reference_measures": {
|
| 12 |
+
"compared_with": "hospital_a",
|
| 13 |
+
"measures": {
|
| 14 |
+
"aaa_balacc_gap": {
|
| 15 |
+
"chance_p95": 0.16666666666666674,
|
| 16 |
+
"chance_p99": 0.2500454545454545,
|
| 17 |
+
"value": 0.4444444444444444,
|
| 18 |
+
"verdict": "weak"
|
| 19 |
+
},
|
| 20 |
+
"aaa_prev_diff": {
|
| 21 |
+
"chance_p95": 0.08249999999999999,
|
| 22 |
+
"chance_p99": 0.105025,
|
| 23 |
+
"value": 0.0025000000000000022,
|
| 24 |
+
"verdict": "within chance"
|
| 25 |
+
},
|
| 26 |
+
"age_band_tv": {
|
| 27 |
+
"chance_p95": 0.2251249999999999,
|
| 28 |
+
"chance_p99": 0.25749999999999995,
|
| 29 |
+
"value": 0.017500000000000005,
|
| 30 |
+
"verdict": "within chance"
|
| 31 |
+
},
|
| 32 |
+
"cmi_s_y_given_x": {
|
| 33 |
+
"chance_p95": 0.0017412381135585482,
|
| 34 |
+
"chance_p99": 0.00344862445271839,
|
| 35 |
+
"value": 0.0197012712436091,
|
| 36 |
+
"verdict": "strong"
|
| 37 |
+
},
|
| 38 |
+
"diameter_w1_mm": {
|
| 39 |
+
"chance_p95": 2.222422553198033,
|
| 40 |
+
"chance_p99": 3.0558571029693504,
|
| 41 |
+
"value": 1.997859351480174,
|
| 42 |
+
"verdict": "within chance"
|
| 43 |
+
},
|
| 44 |
+
"dice_gap": {
|
| 45 |
+
"chance_p95": 0.00622128738602638,
|
| 46 |
+
"chance_p99": 0.007824171785814063,
|
| 47 |
+
"value": 0.0050096979466958125,
|
| 48 |
+
"verdict": "within chance"
|
| 49 |
+
},
|
| 50 |
+
"embed_c2st_auc": {
|
| 51 |
+
"chance_p95": 0.5851531249999999,
|
| 52 |
+
"chance_p99": 0.624419375,
|
| 53 |
+
"value": 0.52125,
|
| 54 |
+
"verdict": "within chance"
|
| 55 |
+
},
|
| 56 |
+
"embed_mmd2": {
|
| 57 |
+
"chance_p95": 0.003110258204608671,
|
| 58 |
+
"chance_p99": 0.004315590781960012,
|
| 59 |
+
"value": -0.0018771111598774315,
|
| 60 |
+
"verdict": "within chance"
|
| 61 |
+
},
|
| 62 |
+
"feature_c2st_auc": {
|
| 63 |
+
"chance_p95": 0.5812312499999999,
|
| 64 |
+
"chance_p99": 0.61777375,
|
| 65 |
+
"value": 0.569125,
|
| 66 |
+
"verdict": "within chance"
|
| 67 |
+
},
|
| 68 |
+
"label_pred_w1_mm": {
|
| 69 |
+
"chance_p95": 0.464911853101532,
|
| 70 |
+
"chance_p99": 0.5753052952284602,
|
| 71 |
+
"value": 0.6040347949900364,
|
| 72 |
+
"verdict": "weak"
|
| 73 |
+
},
|
| 74 |
+
"near_dup_rate": {
|
| 75 |
+
"chance_p95": 0.0,
|
| 76 |
+
"chance_p99": 0.0,
|
| 77 |
+
"value": 0.0,
|
| 78 |
+
"verdict": "within chance"
|
| 79 |
+
},
|
| 80 |
+
"neff_deficit_emb": {
|
| 81 |
+
"chance_p95": 0.0,
|
| 82 |
+
"chance_p99": 0.0,
|
| 83 |
+
"value": 0.0,
|
| 84 |
+
"verdict": "within chance"
|
| 85 |
+
},
|
| 86 |
+
"neff_deficit_pid": {
|
| 87 |
+
"chance_p95": 0.0,
|
| 88 |
+
"chance_p99": 0.0,
|
| 89 |
+
"value": 0.0,
|
| 90 |
+
"verdict": "within chance"
|
| 91 |
+
},
|
| 92 |
+
"phase_tv": {
|
| 93 |
+
"chance_p95": 0.14512499999999992,
|
| 94 |
+
"chance_p99": 0.1751499999999999,
|
| 95 |
+
"value": 0.26,
|
| 96 |
+
"verdict": "weak"
|
| 97 |
+
},
|
| 98 |
+
"sex_tv": {
|
| 99 |
+
"chance_p95": 0.15,
|
| 100 |
+
"chance_p99": 0.1725,
|
| 101 |
+
"value": 0.0024999999999999745,
|
| 102 |
+
"verdict": "within chance"
|
| 103 |
+
},
|
| 104 |
+
"shortcut_max_phi": {
|
| 105 |
+
"chance_p95": 0.8056815791722832,
|
| 106 |
+
"chance_p99": 0.8885233166386386,
|
| 107 |
+
"value": 0.2842427860477457,
|
| 108 |
+
"verdict": "within chance"
|
| 109 |
+
},
|
| 110 |
+
"shortcut_u": {
|
| 111 |
+
"chance_p95": 0.9368951662102973,
|
| 112 |
+
"chance_p99": 1.0000000000000002,
|
| 113 |
+
"value": 0.3588030275715051,
|
| 114 |
+
"verdict": "within chance"
|
| 115 |
+
},
|
| 116 |
+
"size_class_hellinger": {
|
| 117 |
+
"chance_p95": 0.1501256242747197,
|
| 118 |
+
"chance_p99": 0.16974357552479452,
|
| 119 |
+
"value": 0.10241327124318884,
|
| 120 |
+
"verdict": "within chance"
|
| 121 |
+
},
|
| 122 |
+
"slice_class_tv": {
|
| 123 |
+
"chance_p95": 0.1551249999999999,
|
| 124 |
+
"chance_p99": 0.21764999999999984,
|
| 125 |
+
"value": 0.0025000000000000022,
|
| 126 |
+
"verdict": "within chance"
|
| 127 |
+
},
|
| 128 |
+
"vendor_tv": {
|
| 129 |
+
"chance_p95": 0.0857766323024055,
|
| 130 |
+
"chance_p99": 0.12228137651821862,
|
| 131 |
+
"value": 0.060028709382748284,
|
| 132 |
+
"verdict": "within chance"
|
| 133 |
+
}
|
| 134 |
+
},
|
| 135 |
+
"n": 80
|
| 136 |
+
}
|
| 137 |
+
}
|