File size: 2,186 Bytes
ebd4984 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 | {
"dev_config": {
"max_basal_cells": 10000,
"min_cells": 40,
"n_cells_request": 200,
"n_requests": 300
},
"release": "virtual-cell-zeroshot/v1",
"seed": 20260921,
"strata_config": {
"min_cells_measured": 20,
"strong_quantile": 0.6666666666666666,
"weak_quantile": 0.3333333333333333,
"z_threshold": 3.0
},
"target_overlap": {
"ctx_far": {
"n_never_seen": 81,
"n_seen_in_training": 219
},
"ctx_mid": {
"n_never_seen": 80,
"n_seen_in_training": 220
},
"ctx_near": {
"n_never_seen": 80,
"n_seen_in_training": 220
}
},
"test_config": {
"max_basal_cells": 10000,
"max_response_cells": 1000,
"min_cells_test_target": 40,
"min_cells_withheld": 20,
"n_cells_request": {
"10x_3p_v3": 200,
"10x_flex": 400,
"10x_gemx_5p": 200
},
"n_leaderboard": 100,
"n_requests": 300,
"n_withheld": 80
},
"test_contexts": {
"ctx_far": {
"chemistry": "10x_flex",
"n_basal_cells": 10000,
"n_genes": 18080,
"n_requests": 300,
"n_response_cells": 241887,
"n_withheld": 80,
"strata_counts": {
"conserved-strong": 104,
"context-variable": 136,
"unmeasured": 5,
"weak": 55
},
"tier": "far"
},
"ctx_mid": {
"chemistry": "10x_3p_v3",
"n_basal_cells": 10000,
"n_genes": 8749,
"n_requests": 300,
"n_response_cells": 39693,
"n_withheld": 80,
"strata_counts": {
"conserved-strong": 143,
"context-variable": 141,
"weak": 16
},
"tier": "mid"
},
"ctx_near": {
"chemistry": "10x_3p_v3",
"n_basal_cells": 4976,
"n_genes": 9624,
"n_requests": 300,
"n_response_cells": 22924,
"n_withheld": 80,
"strata_counts": {
"conserved-strong": 171,
"context-variable": 118,
"weak": 11
},
"tier": "near"
}
},
"train_contexts": [
"k562",
"jurkat",
"hct116",
"hek293t"
],
"withheld_targets": {
"n": 80,
"note": "removed from every training context; identities are private"
}
}
|