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---
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tags:
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- molecular-property-prediction
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- out-of-distribution
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- QM9
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- graph-neural-networks
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- SCOPE-BENCH
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license: cc-by-nc-4.0
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pretty_name: SCOPE-BENCH
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task_categories:
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- regression
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- feature-extraction
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size_categories:
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- 100K<n<1M
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language:
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- en
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---
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# SCOPE-BENCH: Scaffold-Cluster Out-Of-Distribution Performance Evaluation Benchmark
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SCOPE-BENCH is a rigorous out-of-distribution (OOD) benchmark for molecular property prediction. Unlike conventional scaffold splits, SCOPE-BENCH creates structurally disjoint source and target domains by clustering molecules based on physicochemical descriptors, blocking shortcut learning, and revealing true extrapolation abilities.
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## Dataset Splits
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- Source (training): a0.csv, a1.csv, a6.csv, a8.csv, a9.csv, a11.csv (6 clusters, 94,562 samples)
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- Validation: a10.csv (1 cluster, 18,326 samples)
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- Target (test): a2.csv, a3.csv, a4.csv, a5.csv, a7.csv (5 clusters, 19,894 samples)
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- Fine-grained tasks: scaffold_datasets1/*.csv (16 independent zero-shot tasks, >=200 samples each)
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## Molecular Properties
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Each CSV file contains the following columns:
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- smiles: SMILES string
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- lumo: Lowest Unoccupied Molecular Orbital (eV)
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- homo: Highest Occupied Molecular Orbital (eV)
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- gap: HOMO-LUMO gap (eV)
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## Key Results from the Paper
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- SOTA models fail: ViSNet, ETNN, GotenNet suffer 4.1x average MAE increase on SCOPE-BENCH vs. standard scaffold split.
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- SOMA framework achieves 9.4% average improvement over supervised fine-tuning (ViSNet +7.5%, ETNN +11.2%, GotenNet +3.9-5.9%).
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## File Structure
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SCOPE-BENCH/
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├── a0.csv ... a11.csv # 12 cluster files
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├── scaffold_datasets1/ # 16 independent target scaffolds
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└── README.md
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## Usage
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import pandas as pd
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# Load a source cluster
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df = pd.read_csv("https://hf-mirror.com/datasets/linzhuohao/SCOPE-BENCH/resolve/main/a0.csv")
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print(df.head())
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# Load a fine-grained task
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task_df = pd.read_csv("https://hf-mirror.com/datasets/linzhuohao/SCOPE-BENCH/resolve/main/scaffold_datasets1/a001.csv")
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## Citation
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If you use this dataset, please cite the NeurIPS 2026 paper:
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@article{lin2026scope,
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title={Rethinking Molecular OOD Generalization via Target-Aware Source Selection},
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author={Lin, Zhuohao and Hu, Wenbin},
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journal={Advances in Neural Information Processing Systems (NeurIPS)},
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year={2026}
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}
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## License
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This dataset is released under CC BY-NC 4.0.
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## Acknowledgements
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This dataset is built upon the QM9 dataset. We thank the original authors for making their data publicly available.
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