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thanminh01
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WSI_Embedding

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  1. STAGING-MANIFEST.txt +7 -31
  2. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-CS-4938-01Z-00-DX1.6660D726-8524-424A-B6E8-D97FFD9BCE01.pt +3 -0
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  6. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-CS-4944-01Z-00-DX1.9AD74191-4445-4E77-BD62-B09363C8BB2A.pt +3 -0
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  8. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-CS-5393-01Z-00-DX1.29061bf4-af6c-445c-a5ca-86d99e81545d.pt +3 -0
  9. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-CS-5394-01Z-00-DX1.2ef4d36b-2bf7-4079-990c-3733009db0bd.pt +3 -0
  10. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-CS-5395-01Z-00-DX1.389d3129-a006-4d96-bd0f-1f3240118e5b.pt +3 -0
  11. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-CS-5396-01Z-00-DX1.63f3413b-a950-417a-a49e-9d01efe45c88.pt +3 -0
  12. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-CS-5397-01Z-00-DX1.4AB09928-C5EA-4310-9303-ACD040E4C2B9.pt +3 -0
  13. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-CS-6186-01Z-00-DX1.0CF5363F-B6E6-459C-93FD-0BE69F18A51B.pt +3 -0
  14. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-CS-6188-01Z-00-DX1.1a0175f4-cc20-40b3-9cd3-ef4d1ff95d86.pt +3 -0
  15. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-CS-6290-01Z-00-DX1.34c1d579-aeba-4aa2-b0c5-0b04fb16d7a4.pt +3 -0
  16. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-CS-6665-01Z-00-DX1.0805163E-0752-4383-B9EC-877B505672B8.pt +3 -0
  17. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-CS-6666-01Z-00-DX1.6F91FE79-CCA6-401C-9C3C-74B2F9C9DF4A.pt +3 -0
  18. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-CS-6667-01Z-00-DX1.48760481-6237-4876-AA57-612FDADFFC63.pt +3 -0
  19. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-CS-6668-01Z-00-DX1.D6E80501-5B34-499A-9899-8167575DBBDB.pt +3 -0
  20. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-CS-6669-01Z-00-DX1.B1D9D967-ED63-48F7-9E9F-12B3E74EB0E8.pt +3 -0
  21. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-CS-6670-01Z-00-DX1.A767AC46-DA02-41C6-8829-AE53DB0F386E.pt +3 -0
  22. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-5270-01Z-00-DX1.E0795F24-4D23-408A-8871-2675EC577C23.pt +3 -0
  23. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-5270-01Z-00-DX2.F5F8D418-C805-4293-9688-1CA899A6D15B.pt +3 -0
  24. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-5273-01Z-00-DX1.9E85A2F5-FB10-4C9F-A612-19FFB955C9FF.pt +3 -0
  25. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-5273-01Z-00-DX2.4240617C-BD85-4841-A61E-62EB9C143076.pt +3 -0
  26. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-5274-01Z-00-DX1.28F042EC-7A2E-4AEC-B67A-EF1684BC1361.pt +3 -0
  27. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-5274-01Z-00-DX2.958D3EC3-7E76-4E0D-ACB2-BA67196DAB75.pt +3 -0
  28. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-5275-01Z-00-DX1.E35FB92E-EAE0-4233-9A21-FAC044F1096B.pt +3 -0
  29. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-5275-01Z-00-DX2.30F63FE2-C9CC-4BBA-B2AB-9D857898397E.pt +3 -0
  30. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-5276-01Z-00-DX1.3921BD4C-CC46-43A4-BECF-AAB9A35E6682.pt +3 -0
  31. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-5276-01Z-00-DX2.8C3B6948-8814-414C-BE52-B7DECB53E7E3.pt +3 -0
  32. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-5277-01Z-00-DX1.635F8997-B57B-402D-8889-BE84CA858B16.pt +3 -0
  33. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-5277-01Z-00-DX2.F1B46E37-AC7F-4805-9606-468744147AF8.pt +3 -0
  34. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-5278-01Z-00-DX1.3B0317D3-8C14-4C70-B60B-2153E89056BF.pt +3 -0
  35. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-5278-01Z-00-DX2.39A970EE-DD46-4766-82BE-6B9DBFE57F3E.pt +3 -0
  36. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-5279-01Z-00-DX1.3E13F0B8-ECCE-490F-B035-2A0E9AD632CB.pt +3 -0
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  38. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-5280-01Z-00-DX1.377DED7C-CE43-4735-A6C1-2C2D0A769B18.pt +3 -0
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  42. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-A4X9-01Z-00-DX1.D877E4C5-87FA-4289-BDEB-883F6408C094.pt +3 -0
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  49. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-A4XC-01Z-00-DX2.7CFAE472-1951-436C-B3E6-F05A96FF5773.pt +3 -0
  50. embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap/TCGA-DB-A4XD-01Z-00-DX1.9CEDBD64-B9D3-4F8C-B51F-4E00085742A1.pt +3 -0
STAGING-MANIFEST.txt CHANGED
@@ -1,34 +1,10 @@
1
- # HF staging ALL complete Hub gaps — 2026-08-30T17:38:32+02:00
2
  repo: thanminh01/WSI_Embedding
3
- source_rescan: runs-information/_raw-logs/rescan-vs-hub-20260830-170940.tsv
4
- complete_local gaps staged: 27
5
- excludes: already-on-Hub; LGG virchow2_cls 20x2048 (partial); LGG prism2 20x2048 (in progress)
 
6
  hardlinks: yes
7
 
8
- OK n=547/547 hardlink=True embeddings/BRACS/conch_v1/10x_256px_0px_overlap
9
- OK n=547/547 hardlink=True embeddings/BRACS/gigapath/20x_512px_0px_overlap
10
- OK n=547/547 hardlink=True embeddings/BRACS/musk/20x_2048px_0px_overlap
11
- OK n=547/547 hardlink=True embeddings/BRACS/prism/20x_2048px_0px_overlap
12
- OK n=547/547 hardlink=True embeddings/BRACS/prism2/20x_1024px_0px_overlap
13
- OK n=547/547 hardlink=True embeddings/BRACS/prism2/20x_2048px_0px_overlap
14
- OK n=547/547 hardlink=True embeddings/BRACS/virchow/20x_2048px_0px_overlap
15
- OK n=547/547 hardlink=True embeddings/BRACS/virchow2_cls/20x_1024px_0px_overlap
16
- OK n=547/547 hardlink=True embeddings/BRACS/virchow2_cls/20x_2048px_0px_overlap
17
- OK n=860/860 hardlink=True embeddings/TCGA-GBM/conch_v1/10x_256px_0px_overlap
18
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/conch_v1/10x_1024px_0px_overlap
19
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/conch_v1/10x_2048px_0px_overlap
20
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/conch_v1/10x_256px_0px_overlap
21
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/conch_v15/20x_1024px_0px_overlap
22
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/conch_v15/20x_2048px_0px_overlap
23
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/keep/20x_1024px_0px_overlap
24
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/keep/20x_2048px_0px_overlap
25
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/musk/20x_1024px_0px_overlap
26
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/musk/20x_2048px_0px_overlap
27
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/prism/20x_1024px_0px_overlap
28
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/prism/20x_2048px_0px_overlap
29
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/prism2/20x_1024px_0px_overlap
30
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/titan/20x_1024px_0px_overlap
31
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/titan/20x_2048px_0px_overlap
32
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/virchow/20x_1024px_0px_overlap
33
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/virchow/20x_2048px_0px_overlap
34
- OK n=844/844 hardlink=True embeddings/TCGA-LGG/virchow2_cls/20x_1024px_0px_overlap
 
1
+ # HF staging LGG Hub gaps — 2026-08-31T02:47:26+02:00
2
  repo: thanminh01/WSI_Embedding
3
+ includes:
4
+ TCGA-LGG/virchow2_cls/20x_2048px_0px_overlap (844)
5
+ TCGA-LGG/prism2/20x_2048px_0px_overlap (844)
6
+ note: remaining LGG multiscale paths already on Hub from gaps pack 20260830
7
  hardlinks: yes
8
 
9
+ OK n=844/844 hardlink=True embeddings/TCGA-LGG/virchow2_cls/20x_2048px_0px_overlap
10
+ OK n=844/844 hardlink=True embeddings/TCGA-LGG/prism2/20x_2048px_0px_overlap
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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