Add files using upload-large-folder tool

Run-Information/prep/EBR-coarse30/wsi_states/a1967e81-357f-11eb-8aa9-001a7dda7111__a4b629d3ac65.json

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+{
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+      "message": "Patch coords already generated; skipping.",
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_512px_0px_overlap/patches/a1967e81-357f-11eb-8aa9-001a7dda7111_patches.h5"
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+      "message": "Patch features extracted.",
+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_512px_0px_overlap/patches/a1967e81-357f-11eb-8aa9-001a7dda7111_patches.h5"
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e81-357f-11eb-8aa9-001a7dda7111.jpg"
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+      "message": "Slide features extracted.",
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_512px_0px_overlap/features_conch_v15/a1967e81-357f-11eb-8aa9-001a7dda7111.h5"
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+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e81-357f-11eb-8aa9-001a7dda7111__f8739212831a.json

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+{
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+      "message": "Patch coords generated.",
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+      "message": "Tissue segmented.",
+      "outputs": {
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours_geojson/a1967e81-357f-11eb-8aa9-001a7dda7111.geojson"
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+        }
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+    }
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+  "updated_at": "2026-08-31T10:24:04+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e82-357f-11eb-9461-001a7dda7111__0ce9b1da8b4b.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
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+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-31T14:20:26+0200"
+  },
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+    "ext": ".ndpi",
+    "id": "a1967e82-357f-11eb-9461-001a7dda7111.ndpi__0ce9b1da8b4b",
+    "name": "a1967e82-357f-11eb-9461-001a7dda7111",
+    "reader_type": "OpenSlideWSI",
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+  },
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+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
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+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_1024px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
+        }
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+      "reason": "already_generated",
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+          "started_epoch": 1788178823.2880356
+        }
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+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 20752,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_1024px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
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+        }
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+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e82-357f-11eb-9461-001a7dda7111.jpg"
+        }
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+      "reason": "already_segmented",
+      "status": "skipped"
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+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-31T14:20:26+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e82-357f-11eb-9461-001a7dda7111__1c7e49968718.json

@@ -0,0 +1,86 @@
+{
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+    "last_updated_at": "2026-08-31T19:37:19+0200"
+  },
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+    "ext": ".ndpi",
+    "id": "a1967e82-357f-11eb-9461-001a7dda7111.ndpi__1c7e49968718",
+    "name": "a1967e82-357f-11eb-9461-001a7dda7111",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
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+    "patch_features": {
+      "keep": "completed"
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+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 98448,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_256px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
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+    "patch_features:keep": {
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+          "started_epoch": 1788197831.7504046
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 98448,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_256px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
+        },
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_256px_0px_overlap/features_keep/a1967e82-357f-11eb-9461-001a7dda7111.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 231296,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e82-357f-11eb-9461-001a7dda7111.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-31T19:37:19+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e82-357f-11eb-9461-001a7dda7111__377f0bd8a68c.json

@@ -0,0 +1,127 @@
+{
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+    "mag": 40,
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+  "resume": {
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+    "last_updated_at": "2026-08-31T17:39:49+0200"
+  },
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+  "slide": {
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+    "ext": ".ndpi",
+    "id": "a1967e82-357f-11eb-9461-001a7dda7111.ndpi__377f0bd8a68c",
+    "name": "a1967e82-357f-11eb-9461-001a7dda7111",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
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+    "patch_features": {
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+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
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+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 39640,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_512px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
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+          "started_epoch": 1788190602.761202
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_512px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
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+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
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+        "contour_jpg": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e82-357f-11eb-9461-001a7dda7111.jpg"
+        }
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+          "started_epoch": 1788190789.3795488
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 1393000,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_512px_0px_overlap/features_conch_v15/a1967e82-357f-11eb-9461-001a7dda7111.h5"
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+        }
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+      "status": "completed"
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+  "updated_at": "2026-08-31T17:39:49+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e82-357f-11eb-9461-001a7dda7111__4c9170967b51.json

@@ -0,0 +1,86 @@
+{
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+      "message": "Patch features extracted.",
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+        "coords_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_2048px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
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+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e82-357f-11eb-9461-001a7dda7111.jpg"
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+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e82-357f-11eb-9461-001a7dda7111__7b268f282be8.json

@@ -0,0 +1,165 @@
+{
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+      ],
+      "message": "Tissue segmented.",
+      "outputs": {
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours_geojson/a1967e82-357f-11eb-9461-001a7dda7111.geojson"
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+        }
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+  "updated_at": "2026-08-31T09:29:52+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e82-357f-11eb-9461-001a7dda7111__95b4c32c57a5.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
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+    "name": "a1967e82-357f-11eb-9461-001a7dda7111",
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+  "tasks": {
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+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 11368,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_1024px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
+        }
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+      "reason": "already_generated",
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+          "started_epoch": 1788180541.922658
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_1024px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
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+        }
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+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 231296,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e82-357f-11eb-9461-001a7dda7111.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
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+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-31T14:49:06+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e82-357f-11eb-9461-001a7dda7111__baefd3dfc9aa.json

@@ -0,0 +1,127 @@
+{
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+  "tasks": {
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+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_2048px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
+        }
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+      "reason": "already_generated",
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+        }
+      ],
+      "message": "Patch features extracted.",
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+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_2048px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
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+      "message": "Tissue already segmented; skipping.",
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+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e82-357f-11eb-9461-001a7dda7111.jpg"
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+      "reason": "already_segmented",
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+          "finished_at": "2026-09-01T04:15:50+0200",
+          "finished_epoch": 1788228950.8827624,
+          "result": "completed",
+          "started_at": "2026-09-01T04:15:50+0200",
+          "started_epoch": 1788228950.8440852
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 176440,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_2048px_0px_overlap/features_conch_v15/a1967e82-357f-11eb-9461-001a7dda7111.h5"
+        },
+        "slide_features_path": {
+          "bytes": 45696,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_2048px_0px_overlap/slide_features_titan/a1967e82-357f-11eb-9461-001a7dda7111.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-09-01T04:15:50+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e82-357f-11eb-9461-001a7dda7111__d41ea67b173c.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
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+      45056,
+      49664
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+    "level_count": 10,
+    "mag": 40,
+    "mpp": 0.2278
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-09-01T03:08:37+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15654201/wsi-cache-15654201/gpu_0/batch_36/a1967e82-357f-11eb-9461-001a7dda7111.ndpi",
+    "ext": ".ndpi",
+    "id": "a1967e82-357f-11eb-9461-001a7dda7111.ndpi__d41ea67b173c",
+    "name": "a1967e82-357f-11eb-9461-001a7dda7111",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 20752,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_1024px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
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+          "duration_s": 2.7179229259490967,
+          "error": null,
+          "finished_at": "2026-09-01T03:07:34+0200",
+          "finished_epoch": 1788224854.20394,
+          "result": "completed",
+          "started_at": "2026-09-01T03:07:31+0200",
+          "started_epoch": 1788224851.486017
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 20752,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_1024px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
+        },
+        "features_path": {
+          "bytes": 488584,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_1024px_0px_overlap/features_conch_v15/a1967e82-357f-11eb-9461-001a7dda7111.h5"
+        }
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+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 231296,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e82-357f-11eb-9461-001a7dda7111.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
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+      "attempts": [
+        {
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+          "error": null,
+          "finished_at": "2026-09-01T03:08:37+0200",
+          "finished_epoch": 1788224917.2575808,
+          "result": "completed",
+          "started_at": "2026-09-01T03:08:37+0200",
+          "started_epoch": 1788224917.1389954
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 488584,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_1024px_0px_overlap/features_conch_v15/a1967e82-357f-11eb-9461-001a7dda7111.h5"
+        },
+        "slide_features_path": {
+          "bytes": 55592,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_1024px_0px_overlap/slide_features_titan/a1967e82-357f-11eb-9461-001a7dda7111.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-09-01T03:08:37+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e82-357f-11eb-9461-001a7dda7111__dbdc8eca7bd9.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-09-01T07:16:44+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15654290/wsi-cache-15654290/gpu_0/batch_36/a1967e82-357f-11eb-9461-001a7dda7111.ndpi",
+    "ext": ".ndpi",
+    "id": "a1967e82-357f-11eb-9461-001a7dda7111.ndpi__dbdc8eca7bd9",
+    "name": "a1967e82-357f-11eb-9461-001a7dda7111",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 39640,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_256px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "3f930aa8ae3d",
+          "duration_s": 18.0894558429718,
+          "error": null,
+          "finished_at": "2026-09-01T07:16:44+0200",
+          "finished_epoch": 1788239804.5521562,
+          "result": "completed",
+          "started_at": "2026-09-01T07:16:26+0200",
+          "started_epoch": 1788239786.4627004
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 39640,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_256px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
+        },
+        "features_path": {
+          "bytes": 963944,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_256px_0px_overlap/features_conch_v1/a1967e82-357f-11eb-9461-001a7dda7111.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 231296,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e82-357f-11eb-9461-001a7dda7111.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-09-01T07:16:44+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e82-357f-11eb-9461-001a7dda7111__ed3f46d29a35.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-31T14:00:08+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15654292/wsi-cache-15654292/gpu_0/batch_36/a1967e82-357f-11eb-9461-001a7dda7111.ndpi",
+    "ext": ".ndpi",
+    "id": "a1967e82-357f-11eb-9461-001a7dda7111.ndpi__ed3f46d29a35",
+    "name": "a1967e82-357f-11eb-9461-001a7dda7111",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 10856,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_2048px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
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+          "duration_s": 3.082681894302368,
+          "error": null,
+          "finished_at": "2026-08-31T14:00:08+0200",
+          "finished_epoch": 1788177608.1744068,
+          "result": "completed",
+          "started_at": "2026-08-31T14:00:05+0200",
+          "started_epoch": 1788177605.0917249
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 10856,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_2048px_0px_overlap/patches/a1967e82-357f-11eb-9461-001a7dda7111_patches.h5"
+        },
+        "features_path": {
+          "bytes": 56120,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_2048px_0px_overlap/features_conch_v1/a1967e82-357f-11eb-9461-001a7dda7111.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 231296,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e82-357f-11eb-9461-001a7dda7111.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-31T14:00:08+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e83-357f-11eb-81f1-001a7dda7111__0d83b5989f74.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-31T13:32:26+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15654292/wsi-cache-15654292/gpu_0/batch_19/a1967e83-357f-11eb-81f1-001a7dda7111.ndpi",
+    "ext": ".ndpi",
+    "id": "a1967e83-357f-11eb-81f1-001a7dda7111.ndpi__0d83b5989f74",
+    "name": "a1967e83-357f-11eb-81f1-001a7dda7111",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_2048px_0px_overlap/patches/a1967e83-357f-11eb-81f1-001a7dda7111_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "3e56e29b07f7",
+          "duration_s": 7.102248430252075,
+          "error": null,
+          "finished_at": "2026-08-31T13:32:26+0200",
+          "finished_epoch": 1788175946.4766076,
+          "result": "completed",
+          "started_at": "2026-08-31T13:32:19+0200",
+          "started_epoch": 1788175939.3743591
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 17800,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_2048px_0px_overlap/patches/a1967e83-357f-11eb-81f1-001a7dda7111_patches.h5"
+        },
+        "features_path": {
+          "bytes": 238280,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_2048px_0px_overlap/features_conch_v1/a1967e83-357f-11eb-81f1-001a7dda7111.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 250456,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e83-357f-11eb-81f1-001a7dda7111.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-31T13:32:26+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e83-357f-11eb-81f1-001a7dda7111__1549d9811e40.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-31T13:57:12+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15654291/wsi-cache-15654291/gpu_0/batch_19/a1967e83-357f-11eb-81f1-001a7dda7111.ndpi",
+    "ext": ".ndpi",
+    "id": "a1967e83-357f-11eb-81f1-001a7dda7111.ndpi__1549d9811e40",
+    "name": "a1967e83-357f-11eb-81f1-001a7dda7111",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 34976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_1024px_0px_overlap/patches/a1967e83-357f-11eb-81f1-001a7dda7111_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "b75e3b2b8c8f",
+          "duration_s": 14.606485605239868,
+          "error": null,
+          "finished_at": "2026-08-31T13:57:12+0200",
+          "finished_epoch": 1788177432.6120455,
+          "result": "completed",
+          "started_at": "2026-08-31T13:56:58+0200",
+          "started_epoch": 1788177418.00556
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 34976,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_1024px_0px_overlap/patches/a1967e83-357f-11eb-81f1-001a7dda7111_patches.h5"
+        },
+        "features_path": {
+          "bytes": 790776,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_1024px_0px_overlap/features_conch_v1/a1967e83-357f-11eb-81f1-001a7dda7111.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 250456,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e83-357f-11eb-81f1-001a7dda7111.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-31T13:57:12+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e83-357f-11eb-81f1-001a7dda7111__2d0af37a756a.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:conch_v1",
+    "last_updated_at": "2026-08-31T22:06:57+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15654290/wsi-cache-15654290/gpu_0/batch_19/a1967e83-357f-11eb-81f1-001a7dda7111.ndpi",
+    "ext": ".ndpi",
+    "id": "a1967e83-357f-11eb-81f1-001a7dda7111.ndpi__2d0af37a756a",
+    "name": "a1967e83-357f-11eb-81f1-001a7dda7111",
+    "reader_type": "OpenSlideWSI",
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+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v1": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 330496,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_256px_0px_overlap/patches/a1967e83-357f-11eb-81f1-001a7dda7111_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v1": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "3c303d69a2af",
+          "duration_s": 185.89711546897888,
+          "error": null,
+          "finished_at": "2026-08-31T22:06:57+0200",
+          "finished_epoch": 1788206817.1517968,
+          "result": "completed",
+          "started_at": "2026-08-31T22:03:51+0200",
+          "started_epoch": 1788206631.2546813
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 330496,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_256px_0px_overlap/patches/a1967e83-357f-11eb-81f1-001a7dda7111_patches.h5"
+        },
+        "features_path": {
+          "bytes": 10933688,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/10x_256px_0px_overlap/features_conch_v1/a1967e83-357f-11eb-81f1-001a7dda7111.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 250456,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e83-357f-11eb-81f1-001a7dda7111.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-31T22:06:57+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e83-357f-11eb-81f1-001a7dda7111__3fc181deab8d.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-31T13:41:55+0200"
+  },
+  "schema_version": 2,
+  "slide": {
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+    "ext": ".ndpi",
+    "id": "a1967e83-357f-11eb-81f1-001a7dda7111.ndpi__3fc181deab8d",
+    "name": "a1967e83-357f-11eb-81f1-001a7dda7111",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 95832,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_1024px_0px_overlap/patches/a1967e83-357f-11eb-81f1-001a7dda7111_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "72e902a5f9f2",
+          "duration_s": 8.617395877838135,
+          "error": null,
+          "finished_at": "2026-08-31T13:41:55+0200",
+          "finished_epoch": 1788176515.081935,
+          "result": "completed",
+          "started_at": "2026-08-31T13:41:46+0200",
+          "started_epoch": 1788176506.464539
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 95832,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_1024px_0px_overlap/patches/a1967e83-357f-11eb-81f1-001a7dda7111_patches.h5"
+        },
+        "features_path": {
+          "bytes": 4225128,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_1024px_0px_overlap/features_keep/a1967e83-357f-11eb-81f1-001a7dda7111.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 250456,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e83-357f-11eb-81f1-001a7dda7111.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-31T13:41:55+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e83-357f-11eb-81f1-001a7dda7111__70b346a5aa61.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
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+      77312
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+    "mag": 40,
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+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-08-31T15:55:27+0200"
+  },
+  "schema_version": 2,
+  "slide": {
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+    "ext": ".ndpi",
+    "id": "a1967e83-357f-11eb-81f1-001a7dda7111.ndpi__70b346a5aa61",
+    "name": "a1967e83-357f-11eb-81f1-001a7dda7111",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
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+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 330496,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_512px_0px_overlap/patches/a1967e83-357f-11eb-81f1-001a7dda7111_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
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+          "duration_s": 29.711868286132812,
+          "error": null,
+          "finished_at": "2026-08-31T15:53:05+0200",
+          "finished_epoch": 1788184385.123809,
+          "result": "completed",
+          "started_at": "2026-08-31T15:52:35+0200",
+          "started_epoch": 1788184355.4119408
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 330496,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_512px_0px_overlap/patches/a1967e83-357f-11eb-81f1-001a7dda7111_patches.h5"
+        },
+        "features_path": {
+          "bytes": 16115128,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_512px_0px_overlap/features_conch_v15/a1967e83-357f-11eb-81f1-001a7dda7111.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 250456,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e83-357f-11eb-81f1-001a7dda7111.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
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+      "attempts": [
+        {
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+          "duration_s": 2.8041532039642334,
+          "error": null,
+          "finished_at": "2026-08-31T15:55:27+0200",
+          "finished_epoch": 1788184527.5645182,
+          "result": "completed",
+          "started_at": "2026-08-31T15:55:24+0200",
+          "started_epoch": 1788184524.760365
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 16115128,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_512px_0px_overlap/features_conch_v15/a1967e83-357f-11eb-81f1-001a7dda7111.h5"
+        },
+        "slide_features_path": {
+          "bytes": 363688,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_512px_0px_overlap/slide_features_titan/a1967e83-357f-11eb-81f1-001a7dda7111.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-31T15:55:27+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e83-357f-11eb-81f1-001a7dda7111__9bfcafae6fb0.json

@@ -0,0 +1,127 @@
+{
+  "meta": {
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+      77312
+    ],
+    "level_count": 10,
+    "mag": 40,
+    "mpp": 0.2278
+  },
+  "resume": {
+    "last_status": "completed",
+    "last_task": "slide_features:titan",
+    "last_updated_at": "2026-09-01T02:34:48+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15654201/wsi-cache-15654201/gpu_0/batch_19/a1967e83-357f-11eb-81f1-001a7dda7111.ndpi",
+    "ext": ".ndpi",
+    "id": "a1967e83-357f-11eb-81f1-001a7dda7111.ndpi__9bfcafae6fb0",
+    "name": "a1967e83-357f-11eb-81f1-001a7dda7111",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "conch_v15": "completed"
+    },
+    "segmentation": "skipped (already_segmented)",
+    "slide_features": {
+      "titan": "completed"
+    }
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 95832,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_1024px_0px_overlap/patches/a1967e83-357f-11eb-81f1-001a7dda7111_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:conch_v15": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "1dc92ec48e7b",
+          "duration_s": 8.337542533874512,
+          "error": null,
+          "finished_at": "2026-09-01T02:34:08+0200",
+          "finished_epoch": 1788222848.3316207,
+          "result": "completed",
+          "started_at": "2026-09-01T02:33:59+0200",
+          "started_epoch": 1788222839.9940782
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 95832,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_1024px_0px_overlap/patches/a1967e83-357f-11eb-81f1-001a7dda7111_patches.h5"
+        },
+        "features_path": {
+          "bytes": 4225128,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_1024px_0px_overlap/features_conch_v15/a1967e83-357f-11eb-81f1-001a7dda7111.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 250456,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e83-357f-11eb-81f1-001a7dda7111.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    },
+    "slide_features:titan": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "d080f00df0e8",
+          "duration_s": 0.37944865226745605,
+          "error": null,
+          "finished_at": "2026-09-01T02:34:48+0200",
+          "finished_epoch": 1788222888.773674,
+          "result": "completed",
+          "started_at": "2026-09-01T02:34:48+0200",
+          "started_epoch": 1788222888.3942254
+        }
+      ],
+      "message": "Slide features extracted.",
+      "outputs": {
+        "patch_features_path": {
+          "bytes": 4225128,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_1024px_0px_overlap/features_conch_v15/a1967e83-357f-11eb-81f1-001a7dda7111.h5"
+        },
+        "slide_features_path": {
+          "bytes": 128960,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_1024px_0px_overlap/slide_features_titan/a1967e83-357f-11eb-81f1-001a7dda7111.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-09-01T02:34:48+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e83-357f-11eb-81f1-001a7dda7111__b39f56e45c40.json

@@ -0,0 +1,86 @@
+{
+  "meta": {},
+  "resume": {
+    "last_status": "completed",
+    "last_task": "patch_features:keep",
+    "last_updated_at": "2026-08-31T16:15:31+0200"
+  },
+  "schema_version": 2,
+  "slide": {
+    "abs_path": "/local/jobs/u25798_15654287/wsi-cache-15654287/gpu_0/batch_19/a1967e83-357f-11eb-81f1-001a7dda7111.ndpi",
+    "ext": ".ndpi",
+    "id": "a1967e83-357f-11eb-81f1-001a7dda7111.ndpi__b39f56e45c40",
+    "name": "a1967e83-357f-11eb-81f1-001a7dda7111",
+    "reader_type": "OpenSlideWSI",
+    "rel_path": null
+  },
+  "summary": {
+    "coords": "skipped (already_generated)",
+    "patch_features": {
+      "keep": "completed"
+    },
+    "segmentation": "skipped (already_segmented)"
+  },
+  "tasks": {
+    "coords": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Patch coords already generated; skipping.",
+      "outputs": {
+        "coords_h5": {
+          "bytes": 1253664,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_256px_0px_overlap/patches/a1967e83-357f-11eb-81f1-001a7dda7111_patches.h5"
+        }
+      },
+      "reason": "already_generated",
+      "status": "skipped"
+    },
+    "patch_features:keep": {
+      "_active_attempt_id": null,
+      "attempts": [
+        {
+          "attempt_id": "bbaf610f6f6b",
+          "duration_s": 66.79439973831177,
+          "error": null,
+          "finished_at": "2026-08-31T16:15:31+0200",
+          "finished_epoch": 1788185731.031014,
+          "result": "completed",
+          "started_at": "2026-08-31T16:14:24+0200",
+          "started_epoch": 1788185664.2366142
+        }
+      ],
+      "message": "Patch features extracted.",
+      "outputs": {
+        "coords_path": {
+          "bytes": 1253664,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_256px_0px_overlap/patches/a1967e83-357f-11eb-81f1-001a7dda7111_patches.h5"
+        },
+        "features_path": {
+          "bytes": 63035592,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/20x_256px_0px_overlap/features_keep/a1967e83-357f-11eb-81f1-001a7dda7111.h5"
+        }
+      },
+      "reason": null,
+      "status": "completed"
+    },
+    "segmentation": {
+      "_active_attempt_id": null,
+      "attempts": [],
+      "message": "Tissue already segmented; skipping.",
+      "outputs": {
+        "contour_jpg": {
+          "bytes": 250456,
+          "exists": true,
+          "path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-EBR-coarse30/contours/a1967e83-357f-11eb-81f1-001a7dda7111.jpg"
+        }
+      },
+      "reason": "already_segmented",
+      "status": "skipped"
+    }
+  },
+  "trident_version": "0.3.0",
+  "updated_at": "2026-08-31T16:15:31+0200"
+}

Run-Information/prep/EBR-coarse30/wsi_states/a1967e83-357f-11eb-81f1-001a7dda7111__c336a92d984f.json

@@ -0,0 +1,198 @@
+{
+  "meta": {},
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