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Run-Information/prep/UBC-OCEAN/wsi_states/3084__d0415d79ffd9.json
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Run-Information/prep/UBC-OCEAN/wsi_states/3084__d6e8e37ba144.json
ADDED
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@@ -0,0 +1,127 @@
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"finished_at": "2026-10-07T15:39:06+0200",
|
| 102 |
+
"finished_epoch": 1791380346.420726,
|
| 103 |
+
"result": "completed",
|
| 104 |
+
"started_at": "2026-10-07T15:39:05+0200",
|
| 105 |
+
"started_epoch": 1791380345.9608479
|
| 106 |
+
}
|
| 107 |
+
],
|
| 108 |
+
"message": "Slide features extracted.",
|
| 109 |
+
"outputs": {
|
| 110 |
+
"patch_features_path": {
|
| 111 |
+
"bytes": 3383864,
|
| 112 |
+
"exists": true,
|
| 113 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/3084.h5"
|
| 114 |
+
},
|
| 115 |
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"slide_features_path": {
|
| 116 |
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"bytes": 111784,
|
| 117 |
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"exists": true,
|
| 118 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/slide_features_titan/3084.h5"
|
| 119 |
+
}
|
| 120 |
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},
|
| 121 |
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"reason": null,
|
| 122 |
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"status": "completed"
|
| 123 |
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}
|
| 124 |
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},
|
| 125 |
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"trident_version": "0.3.0",
|
| 126 |
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"updated_at": "2026-10-07T15:39:06+0200"
|
| 127 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3084__d7b71af84f34.json
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
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| 3 |
+
"mpp": 0.5
|
| 4 |
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},
|
| 5 |
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"resume": {
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| 6 |
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"last_status": "completed",
|
| 7 |
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"last_task": "patch_features:keep",
|
| 8 |
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"last_updated_at": "2026-10-07T15:29:46+0200"
|
| 9 |
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},
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| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540592/wsi-cache-16540592/gpu_0/batch_1/3084.tif",
|
| 13 |
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"ext": ".tif",
|
| 14 |
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"id": "3084.tif__d7b71af84f34",
|
| 15 |
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"name": "3084",
|
| 16 |
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"reader_type": "OpenSlideWSI",
|
| 17 |
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"rel_path": null
|
| 18 |
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},
|
| 19 |
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"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
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"patch_features": {
|
| 22 |
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"keep": "completed"
|
| 23 |
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},
|
| 24 |
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"segmentation": "skipped (already_segmented)"
|
| 25 |
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},
|
| 26 |
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"tasks": {
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| 27 |
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"coords": {
|
| 28 |
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"_active_attempt_id": null,
|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
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"outputs": {
|
| 32 |
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"coords_h5": {
|
| 33 |
+
"bytes": 78656,
|
| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/3084_patches.h5"
|
| 36 |
+
}
|
| 37 |
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},
|
| 38 |
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"reason": "already_generated",
|
| 39 |
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"status": "skipped"
|
| 40 |
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},
|
| 41 |
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"patch_features:keep": {
|
| 42 |
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"_active_attempt_id": null,
|
| 43 |
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"attempts": [
|
| 44 |
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{
|
| 45 |
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"attempt_id": "0ed2b9cdcf2d",
|
| 46 |
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"duration_s": 10.144569396972656,
|
| 47 |
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"error": null,
|
| 48 |
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"finished_at": "2026-10-07T15:29:46+0200",
|
| 49 |
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"finished_epoch": 1791379786.846559,
|
| 50 |
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"result": "completed",
|
| 51 |
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"started_at": "2026-10-07T15:29:36+0200",
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| 52 |
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"started_epoch": 1791379776.7019897
|
| 53 |
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}
|
| 54 |
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],
|
| 55 |
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"message": "Patch features extracted.",
|
| 56 |
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"outputs": {
|
| 57 |
+
"coords_path": {
|
| 58 |
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"bytes": 78656,
|
| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/3084_patches.h5"
|
| 61 |
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},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 3383864,
|
| 64 |
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"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_keep/3084.h5"
|
| 66 |
+
}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
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},
|
| 71 |
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"segmentation": {
|
| 72 |
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"_active_attempt_id": null,
|
| 73 |
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"attempts": [],
|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
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"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
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"bytes": 291354,
|
| 78 |
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"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3084.jpg"
|
| 80 |
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}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T15:29:46+0200"
|
| 88 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30868__268988bc8122.json
ADDED
|
@@ -0,0 +1,127 @@
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
| 1 |
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{
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| 2 |
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"meta": {
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| 3 |
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"dimensions": [
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| 4 |
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| 5 |
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],
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| 7 |
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|
| 8 |
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"mag": 20,
|
| 9 |
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|
| 10 |
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| 11 |
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| 14 |
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|
| 15 |
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},
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| 16 |
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"schema_version": 2,
|
| 17 |
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| 18 |
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| 19 |
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"ext": ".tif",
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| 20 |
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"id": "30868.tif__268988bc8122",
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| 21 |
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"name": "30868",
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| 25 |
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| 26 |
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| 27 |
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| 29 |
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| 31 |
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| 32 |
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|
| 33 |
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| 34 |
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| 35 |
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| 38 |
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| 39 |
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"message": "Patch coords already generated; skipping.",
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| 40 |
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"outputs": {
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| 42 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/30868_patches.h5"
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| 47 |
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| 48 |
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| 50 |
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| 61 |
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| 62 |
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}
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],
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| 64 |
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"message": "Patch features extracted.",
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| 65 |
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| 67 |
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"bytes": 25080,
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| 68 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/30868_patches.h5"
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| 75 |
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| 77 |
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| 82 |
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| 83 |
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| 84 |
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| 85 |
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| 86 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30868.jpg"
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| 89 |
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}
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},
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"reason": "already_segmented",
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| 105 |
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"started_epoch": 1791383590.8107424
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}
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| 107 |
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],
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| 108 |
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"message": "Slide features extracted.",
|
| 109 |
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"outputs": {
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| 110 |
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"patch_features_path": {
|
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"bytes": 624552,
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| 112 |
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"exists": true,
|
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/features_conch_v15/30868.h5"
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/slide_features_titan/30868.h5"
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| 119 |
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}
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| 120 |
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},
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| 121 |
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}
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"updated_at": "2026-10-07T16:33:11+0200"
|
| 127 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30868__599141593ad7.json
ADDED
|
@@ -0,0 +1,88 @@
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|
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|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"mpp": 0.5
|
| 4 |
+
},
|
| 5 |
+
"resume": {
|
| 6 |
+
"last_status": "completed",
|
| 7 |
+
"last_task": "patch_features:keep",
|
| 8 |
+
"last_updated_at": "2026-10-07T23:02:30+0200"
|
| 9 |
+
},
|
| 10 |
+
"schema_version": 2,
|
| 11 |
+
"slide": {
|
| 12 |
+
"abs_path": "/local/jobs/u25798_16540467/wsi-cache-16540467/gpu_0/batch_15/30868.tif",
|
| 13 |
+
"ext": ".tif",
|
| 14 |
+
"id": "30868.tif__599141593ad7",
|
| 15 |
+
"name": "30868",
|
| 16 |
+
"reader_type": "OpenSlideWSI",
|
| 17 |
+
"rel_path": null
|
| 18 |
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},
|
| 19 |
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"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
+
"patch_features": {
|
| 22 |
+
"keep": "completed"
|
| 23 |
+
},
|
| 24 |
+
"segmentation": "skipped (already_segmented)"
|
| 25 |
+
},
|
| 26 |
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"tasks": {
|
| 27 |
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"coords": {
|
| 28 |
+
"_active_attempt_id": null,
|
| 29 |
+
"attempts": [],
|
| 30 |
+
"message": "Patch coords already generated; skipping.",
|
| 31 |
+
"outputs": {
|
| 32 |
+
"coords_h5": {
|
| 33 |
+
"bytes": 547624,
|
| 34 |
+
"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/30868_patches.h5"
|
| 36 |
+
}
|
| 37 |
+
},
|
| 38 |
+
"reason": "already_generated",
|
| 39 |
+
"status": "skipped"
|
| 40 |
+
},
|
| 41 |
+
"patch_features:keep": {
|
| 42 |
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"_active_attempt_id": null,
|
| 43 |
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"attempts": [
|
| 44 |
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{
|
| 45 |
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"attempt_id": "d9f2a663ec6f",
|
| 46 |
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|
| 47 |
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|
| 48 |
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"finished_at": "2026-10-07T23:02:30+0200",
|
| 49 |
+
"finished_epoch": 1791406950.3600895,
|
| 50 |
+
"result": "completed",
|
| 51 |
+
"started_at": "2026-10-07T23:01:56+0200",
|
| 52 |
+
"started_epoch": 1791406916.6124587
|
| 53 |
+
}
|
| 54 |
+
],
|
| 55 |
+
"message": "Patch features extracted.",
|
| 56 |
+
"outputs": {
|
| 57 |
+
"coords_path": {
|
| 58 |
+
"bytes": 547624,
|
| 59 |
+
"exists": true,
|
| 60 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/30868_patches.h5"
|
| 61 |
+
},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 27166936,
|
| 64 |
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"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/features_keep/30868.h5"
|
| 66 |
+
}
|
| 67 |
+
},
|
| 68 |
+
"reason": null,
|
| 69 |
+
"status": "completed"
|
| 70 |
+
},
|
| 71 |
+
"segmentation": {
|
| 72 |
+
"_active_attempt_id": null,
|
| 73 |
+
"attempts": [],
|
| 74 |
+
"message": "Tissue already segmented; skipping.",
|
| 75 |
+
"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
+
"bytes": 138741,
|
| 78 |
+
"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30868.jpg"
|
| 80 |
+
}
|
| 81 |
+
},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T23:02:30+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30868__73d435570ced.json
ADDED
|
@@ -0,0 +1,127 @@
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|
|
|
|
|
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|
|
|
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|
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|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
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|
|
|
|
|
|
|
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|
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|
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|
|
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|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"dimensions": [
|
| 4 |
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|
| 5 |
+
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|
| 6 |
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],
|
| 7 |
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"level_count": 1,
|
| 8 |
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"mag": 20,
|
| 9 |
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"mpp": 0.5
|
| 10 |
+
},
|
| 11 |
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"resume": {
|
| 12 |
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"last_status": "completed",
|
| 13 |
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"last_task": "slide_features:titan",
|
| 14 |
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"last_updated_at": "2026-10-07T20:06:35+0200"
|
| 15 |
+
},
|
| 16 |
+
"schema_version": 2,
|
| 17 |
+
"slide": {
|
| 18 |
+
"abs_path": "/local/jobs/u25798_16540555/wsi-cache-16540555/gpu_0/batch_15/30868.tif",
|
| 19 |
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"ext": ".tif",
|
| 20 |
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"id": "30868.tif__73d435570ced",
|
| 21 |
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"name": "30868",
|
| 22 |
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"reader_type": "OpenSlideWSI",
|
| 23 |
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"rel_path": null
|
| 24 |
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},
|
| 25 |
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"summary": {
|
| 26 |
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"coords": "skipped (already_generated)",
|
| 27 |
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"patch_features": {
|
| 28 |
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"conch_v15": "completed"
|
| 29 |
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},
|
| 30 |
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"segmentation": "skipped (already_segmented)",
|
| 31 |
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"slide_features": {
|
| 32 |
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"titan": "completed"
|
| 33 |
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}
|
| 34 |
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},
|
| 35 |
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"tasks": {
|
| 36 |
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|
| 37 |
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|
| 38 |
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"attempts": [],
|
| 39 |
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"message": "Patch coords already generated; skipping.",
|
| 40 |
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"outputs": {
|
| 41 |
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"coords_h5": {
|
| 42 |
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"bytes": 52328,
|
| 43 |
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"exists": true,
|
| 44 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/30868_patches.h5"
|
| 45 |
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}
|
| 46 |
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},
|
| 47 |
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"reason": "already_generated",
|
| 48 |
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| 49 |
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},
|
| 50 |
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|
| 51 |
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|
| 52 |
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| 53 |
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{
|
| 54 |
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| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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"started_epoch": 1791396121.2119546
|
| 62 |
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}
|
| 63 |
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],
|
| 64 |
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"message": "Patch features extracted.",
|
| 65 |
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"outputs": {
|
| 66 |
+
"coords_path": {
|
| 67 |
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"bytes": 52328,
|
| 68 |
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"exists": true,
|
| 69 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/30868_patches.h5"
|
| 70 |
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},
|
| 71 |
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"features_path": {
|
| 72 |
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"bytes": 2085848,
|
| 73 |
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"exists": true,
|
| 74 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/30868.h5"
|
| 75 |
+
}
|
| 76 |
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},
|
| 77 |
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"reason": null,
|
| 78 |
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"status": "completed"
|
| 79 |
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},
|
| 80 |
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"segmentation": {
|
| 81 |
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|
| 82 |
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"attempts": [],
|
| 83 |
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"message": "Tissue already segmented; skipping.",
|
| 84 |
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"outputs": {
|
| 85 |
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|
| 86 |
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"bytes": 138741,
|
| 87 |
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"exists": true,
|
| 88 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30868.jpg"
|
| 89 |
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}
|
| 90 |
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},
|
| 91 |
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"reason": "already_segmented",
|
| 92 |
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"status": "skipped"
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| 93 |
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},
|
| 94 |
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"slide_features:titan": {
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| 95 |
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| 96 |
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"attempts": [
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| 97 |
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{
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| 98 |
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"attempt_id": "45499c82091f",
|
| 99 |
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"duration_s": 0.6498706340789795,
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| 100 |
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|
| 101 |
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|
| 102 |
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"finished_epoch": 1791396395.9651825,
|
| 103 |
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"result": "completed",
|
| 104 |
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|
| 105 |
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"started_epoch": 1791396395.315312
|
| 106 |
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}
|
| 107 |
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],
|
| 108 |
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"message": "Slide features extracted.",
|
| 109 |
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"outputs": {
|
| 110 |
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"patch_features_path": {
|
| 111 |
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"bytes": 2085848,
|
| 112 |
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"exists": true,
|
| 113 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/30868.h5"
|
| 114 |
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},
|
| 115 |
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"slide_features_path": {
|
| 116 |
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"bytes": 87328,
|
| 117 |
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"exists": true,
|
| 118 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/slide_features_titan/30868.h5"
|
| 119 |
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}
|
| 120 |
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},
|
| 121 |
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"reason": null,
|
| 122 |
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"status": "completed"
|
| 123 |
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}
|
| 124 |
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},
|
| 125 |
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"trident_version": "0.3.0",
|
| 126 |
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"updated_at": "2026-10-07T20:06:35+0200"
|
| 127 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30868__74c2c061a206.json
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
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|
|
|
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|
|
|
|
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|
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|
|
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|
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|
|
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|
|
|
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|
|
|
|
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|
|
|
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|
|
|
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|
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|
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|
|
|
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|
|
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|
|
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|
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|
|
|
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|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
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"mpp": 0.5
|
| 4 |
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},
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| 5 |
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"resume": {
|
| 6 |
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"last_status": "completed",
|
| 7 |
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"last_task": "patch_features:conch_v1",
|
| 8 |
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|
| 9 |
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},
|
| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540688/wsi-cache-16540688/gpu_0/batch_15/30868.tif",
|
| 13 |
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"ext": ".tif",
|
| 14 |
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"id": "30868.tif__74c2c061a206",
|
| 15 |
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"name": "30868",
|
| 16 |
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"reader_type": "OpenSlideWSI",
|
| 17 |
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"rel_path": null
|
| 18 |
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},
|
| 19 |
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"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
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"patch_features": {
|
| 22 |
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"conch_v1": "completed"
|
| 23 |
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},
|
| 24 |
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"segmentation": "skipped (already_segmented)"
|
| 25 |
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},
|
| 26 |
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"tasks": {
|
| 27 |
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|
| 28 |
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"_active_attempt_id": null,
|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
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"outputs": {
|
| 32 |
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"coords_h5": {
|
| 33 |
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"bytes": 154720,
|
| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_256px_0px_overlap/patches/30868_patches.h5"
|
| 36 |
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}
|
| 37 |
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},
|
| 38 |
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"reason": "already_generated",
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| 39 |
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"status": "skipped"
|
| 40 |
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},
|
| 41 |
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"patch_features:conch_v1": {
|
| 42 |
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| 43 |
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"attempts": [
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| 44 |
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{
|
| 45 |
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"attempt_id": "1f68226ccced",
|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
+
"finished_epoch": 1791415511.014375,
|
| 50 |
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"result": "completed",
|
| 51 |
+
"started_at": "2026-10-08T01:23:37+0200",
|
| 52 |
+
"started_epoch": 1791415417.8058572
|
| 53 |
+
}
|
| 54 |
+
],
|
| 55 |
+
"message": "Patch features extracted.",
|
| 56 |
+
"outputs": {
|
| 57 |
+
"coords_path": {
|
| 58 |
+
"bytes": 154720,
|
| 59 |
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|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_256px_0px_overlap/patches/30868_patches.h5"
|
| 61 |
+
},
|
| 62 |
+
"features_path": {
|
| 63 |
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"bytes": 4993064,
|
| 64 |
+
"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_256px_0px_overlap/features_conch_v1/30868.h5"
|
| 66 |
+
}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
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},
|
| 71 |
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"segmentation": {
|
| 72 |
+
"_active_attempt_id": null,
|
| 73 |
+
"attempts": [],
|
| 74 |
+
"message": "Tissue already segmented; skipping.",
|
| 75 |
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"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
+
"bytes": 138741,
|
| 78 |
+
"exists": true,
|
| 79 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30868.jpg"
|
| 80 |
+
}
|
| 81 |
+
},
|
| 82 |
+
"reason": "already_segmented",
|
| 83 |
+
"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-08T01:25:11+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30868__9867071441a9.json
ADDED
|
@@ -0,0 +1,88 @@
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|
|
|
|
|
|
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|
|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"mpp": 0.5
|
| 4 |
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},
|
| 5 |
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"resume": {
|
| 6 |
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"last_status": "completed",
|
| 7 |
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"last_task": "patch_features:keep",
|
| 8 |
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"last_updated_at": "2026-10-07T16:26:31+0200"
|
| 9 |
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},
|
| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540592/wsi-cache-16540592/gpu_0/batch_15/30868.tif",
|
| 13 |
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"ext": ".tif",
|
| 14 |
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"id": "30868.tif__9867071441a9",
|
| 15 |
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"name": "30868",
|
| 16 |
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"reader_type": "OpenSlideWSI",
|
| 17 |
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"rel_path": null
|
| 18 |
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},
|
| 19 |
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"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
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"patch_features": {
|
| 22 |
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"keep": "completed"
|
| 23 |
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},
|
| 24 |
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"segmentation": "skipped (already_segmented)"
|
| 25 |
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},
|
| 26 |
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"tasks": {
|
| 27 |
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"coords": {
|
| 28 |
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"_active_attempt_id": null,
|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
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"outputs": {
|
| 32 |
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"coords_h5": {
|
| 33 |
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"bytes": 52328,
|
| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/30868_patches.h5"
|
| 36 |
+
}
|
| 37 |
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},
|
| 38 |
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"reason": "already_generated",
|
| 39 |
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"status": "skipped"
|
| 40 |
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},
|
| 41 |
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"patch_features:keep": {
|
| 42 |
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"_active_attempt_id": null,
|
| 43 |
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"attempts": [
|
| 44 |
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{
|
| 45 |
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"attempt_id": "e0482bf46958",
|
| 46 |
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"duration_s": 6.7680230140686035,
|
| 47 |
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"error": null,
|
| 48 |
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"finished_at": "2026-10-07T16:26:31+0200",
|
| 49 |
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"finished_epoch": 1791383191.4831624,
|
| 50 |
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|
| 51 |
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|
| 52 |
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"started_epoch": 1791383184.7151394
|
| 53 |
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}
|
| 54 |
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],
|
| 55 |
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"message": "Patch features extracted.",
|
| 56 |
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"outputs": {
|
| 57 |
+
"coords_path": {
|
| 58 |
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"bytes": 52328,
|
| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/30868_patches.h5"
|
| 61 |
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},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 2085848,
|
| 64 |
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"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_keep/30868.h5"
|
| 66 |
+
}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
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},
|
| 71 |
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"segmentation": {
|
| 72 |
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"_active_attempt_id": null,
|
| 73 |
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"attempts": [],
|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
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"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
+
"bytes": 138741,
|
| 78 |
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"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30868.jpg"
|
| 80 |
+
}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T16:26:31+0200"
|
| 88 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30868__a8d5db1abcfb.json
ADDED
|
@@ -0,0 +1,127 @@
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
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|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
| 1 |
+
{
|
| 2 |
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"meta": {
|
| 3 |
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"dimensions": [
|
| 4 |
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|
| 5 |
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|
| 6 |
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],
|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
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},
|
| 11 |
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|
| 12 |
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| 13 |
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|
| 14 |
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|
| 15 |
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},
|
| 16 |
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"schema_version": 2,
|
| 17 |
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"slide": {
|
| 18 |
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"abs_path": "/local/jobs/u25798_16540458/wsi-cache-16540458/gpu_0/batch_15/30868.tif",
|
| 19 |
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"ext": ".tif",
|
| 20 |
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"id": "30868.tif__a8d5db1abcfb",
|
| 21 |
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"name": "30868",
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| 22 |
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| 23 |
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| 24 |
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| 25 |
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| 26 |
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| 27 |
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| 28 |
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|
| 29 |
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| 30 |
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|
| 31 |
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| 32 |
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|
| 33 |
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| 34 |
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| 35 |
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| 36 |
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| 37 |
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| 38 |
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| 39 |
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| 40 |
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"outputs": {
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| 41 |
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| 42 |
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| 43 |
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|
| 44 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/patches/30868_patches.h5"
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| 45 |
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| 46 |
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},
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| 47 |
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| 48 |
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| 49 |
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| 50 |
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| 51 |
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| 52 |
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{
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| 54 |
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| 55 |
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| 56 |
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| 57 |
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| 58 |
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| 59 |
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| 60 |
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| 61 |
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"started_epoch": 1791385494.0102584
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| 62 |
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}
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| 63 |
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],
|
| 64 |
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"message": "Patch features extracted.",
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| 65 |
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"outputs": {
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| 66 |
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"coords_path": {
|
| 67 |
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"bytes": 154640,
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| 68 |
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"exists": true,
|
| 69 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/patches/30868_patches.h5"
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| 70 |
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"features_path": {
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| 72 |
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|
| 75 |
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|
| 76 |
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| 77 |
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|
| 78 |
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| 79 |
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| 80 |
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| 81 |
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| 82 |
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|
| 83 |
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|
| 84 |
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| 85 |
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|
| 86 |
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"bytes": 138741,
|
| 87 |
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"exists": true,
|
| 88 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30868.jpg"
|
| 89 |
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}
|
| 90 |
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},
|
| 91 |
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"reason": "already_segmented",
|
| 92 |
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|
| 93 |
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},
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| 94 |
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|
| 95 |
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| 96 |
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| 97 |
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{
|
| 98 |
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| 99 |
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|
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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"started_epoch": 1791385552.7868087
|
| 106 |
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}
|
| 107 |
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],
|
| 108 |
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"message": "Slide features extracted.",
|
| 109 |
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"outputs": {
|
| 110 |
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"patch_features_path": {
|
| 111 |
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"bytes": 7335896,
|
| 112 |
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"exists": true,
|
| 113 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/features_conch_v15/30868.h5"
|
| 114 |
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},
|
| 115 |
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|
| 116 |
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|
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|
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/slide_features_titan/30868.h5"
|
| 119 |
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}
|
| 120 |
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},
|
| 121 |
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"reason": null,
|
| 122 |
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"status": "completed"
|
| 123 |
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}
|
| 124 |
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},
|
| 125 |
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"trident_version": "0.3.0",
|
| 126 |
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"updated_at": "2026-10-07T17:05:53+0200"
|
| 127 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30868__ad9492ca22a5.json
ADDED
|
@@ -0,0 +1,127 @@
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|
|
|
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|
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|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
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|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
|
|
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|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"dimensions": [
|
| 4 |
+
62945,
|
| 5 |
+
30028
|
| 6 |
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],
|
| 7 |
+
"level_count": 1,
|
| 8 |
+
"mag": 20,
|
| 9 |
+
"mpp": 0.5
|
| 10 |
+
},
|
| 11 |
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|
| 12 |
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"last_status": "completed",
|
| 13 |
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"last_task": "slide_features:titan",
|
| 14 |
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"last_updated_at": "2026-10-07T17:07:52+0200"
|
| 15 |
+
},
|
| 16 |
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"schema_version": 2,
|
| 17 |
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"slide": {
|
| 18 |
+
"abs_path": "/local/jobs/u25798_16540552/wsi-cache-16540552/gpu_0/batch_15/30868.tif",
|
| 19 |
+
"ext": ".tif",
|
| 20 |
+
"id": "30868.tif__ad9492ca22a5",
|
| 21 |
+
"name": "30868",
|
| 22 |
+
"reader_type": "OpenSlideWSI",
|
| 23 |
+
"rel_path": null
|
| 24 |
+
},
|
| 25 |
+
"summary": {
|
| 26 |
+
"coords": "skipped (already_generated)",
|
| 27 |
+
"patch_features": {
|
| 28 |
+
"conch_v15": "completed"
|
| 29 |
+
},
|
| 30 |
+
"segmentation": "skipped (already_segmented)",
|
| 31 |
+
"slide_features": {
|
| 32 |
+
"titan": "completed"
|
| 33 |
+
}
|
| 34 |
+
},
|
| 35 |
+
"tasks": {
|
| 36 |
+
"coords": {
|
| 37 |
+
"_active_attempt_id": null,
|
| 38 |
+
"attempts": [],
|
| 39 |
+
"message": "Patch coords already generated; skipping.",
|
| 40 |
+
"outputs": {
|
| 41 |
+
"coords_h5": {
|
| 42 |
+
"bytes": 52328,
|
| 43 |
+
"exists": true,
|
| 44 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/30868_patches.h5"
|
| 45 |
+
}
|
| 46 |
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},
|
| 47 |
+
"reason": "already_generated",
|
| 48 |
+
"status": "skipped"
|
| 49 |
+
},
|
| 50 |
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"patch_features:conch_v15": {
|
| 51 |
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"_active_attempt_id": null,
|
| 52 |
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"attempts": [
|
| 53 |
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{
|
| 54 |
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"attempt_id": "7265c6a22b0d",
|
| 55 |
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"duration_s": 19.438274383544922,
|
| 56 |
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|
| 57 |
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"finished_at": "2026-10-07T17:02:06+0200",
|
| 58 |
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"finished_epoch": 1791385326.5840638,
|
| 59 |
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|
| 60 |
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|
| 61 |
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"started_epoch": 1791385307.1457894
|
| 62 |
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}
|
| 63 |
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],
|
| 64 |
+
"message": "Patch features extracted.",
|
| 65 |
+
"outputs": {
|
| 66 |
+
"coords_path": {
|
| 67 |
+
"bytes": 52328,
|
| 68 |
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"exists": true,
|
| 69 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/30868_patches.h5"
|
| 70 |
+
},
|
| 71 |
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"features_path": {
|
| 72 |
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"bytes": 2085848,
|
| 73 |
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"exists": true,
|
| 74 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/30868.h5"
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
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"reason": null,
|
| 78 |
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"status": "completed"
|
| 79 |
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},
|
| 80 |
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"segmentation": {
|
| 81 |
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"_active_attempt_id": null,
|
| 82 |
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"attempts": [],
|
| 83 |
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"message": "Tissue already segmented; skipping.",
|
| 84 |
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"outputs": {
|
| 85 |
+
"contour_jpg": {
|
| 86 |
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"bytes": 138741,
|
| 87 |
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"exists": true,
|
| 88 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30868.jpg"
|
| 89 |
+
}
|
| 90 |
+
},
|
| 91 |
+
"reason": "already_segmented",
|
| 92 |
+
"status": "skipped"
|
| 93 |
+
},
|
| 94 |
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"slide_features:titan": {
|
| 95 |
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"_active_attempt_id": null,
|
| 96 |
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"attempts": [
|
| 97 |
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{
|
| 98 |
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"attempt_id": "733ac3917e66",
|
| 99 |
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"duration_s": 0.6919784545898438,
|
| 100 |
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"error": null,
|
| 101 |
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"finished_at": "2026-10-07T17:07:52+0200",
|
| 102 |
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"finished_epoch": 1791385672.5508378,
|
| 103 |
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"result": "completed",
|
| 104 |
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"started_at": "2026-10-07T17:07:51+0200",
|
| 105 |
+
"started_epoch": 1791385671.8588593
|
| 106 |
+
}
|
| 107 |
+
],
|
| 108 |
+
"message": "Slide features extracted.",
|
| 109 |
+
"outputs": {
|
| 110 |
+
"patch_features_path": {
|
| 111 |
+
"bytes": 2085848,
|
| 112 |
+
"exists": true,
|
| 113 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/30868.h5"
|
| 114 |
+
},
|
| 115 |
+
"slide_features_path": {
|
| 116 |
+
"bytes": 87328,
|
| 117 |
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"exists": true,
|
| 118 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/slide_features_titan/30868.h5"
|
| 119 |
+
}
|
| 120 |
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},
|
| 121 |
+
"reason": null,
|
| 122 |
+
"status": "completed"
|
| 123 |
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}
|
| 124 |
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},
|
| 125 |
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"trident_version": "0.3.0",
|
| 126 |
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"updated_at": "2026-10-07T17:07:52+0200"
|
| 127 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30868__ada215070166.json
ADDED
|
@@ -0,0 +1,88 @@
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|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
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|
|
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|
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|
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|
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|
|
|
|
|
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|
|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"mpp": 0.5
|
| 4 |
+
},
|
| 5 |
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"resume": {
|
| 6 |
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"last_status": "completed",
|
| 7 |
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"last_task": "patch_features:conch_v1",
|
| 8 |
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"last_updated_at": "2026-10-07T23:43:11+0200"
|
| 9 |
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},
|
| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540702/wsi-cache-16540702/gpu_0/batch_15/30868.tif",
|
| 13 |
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"ext": ".tif",
|
| 14 |
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"id": "30868.tif__ada215070166",
|
| 15 |
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"name": "30868",
|
| 16 |
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"reader_type": "OpenSlideWSI",
|
| 17 |
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"rel_path": null
|
| 18 |
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},
|
| 19 |
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"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
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"patch_features": {
|
| 22 |
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|
| 23 |
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},
|
| 24 |
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"segmentation": "skipped (already_segmented)"
|
| 25 |
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},
|
| 26 |
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"tasks": {
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| 27 |
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"coords": {
|
| 28 |
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"_active_attempt_id": null,
|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
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"outputs": {
|
| 32 |
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"coords_h5": {
|
| 33 |
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"bytes": 11512,
|
| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/30868_patches.h5"
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| 36 |
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}
|
| 37 |
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},
|
| 38 |
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"reason": "already_generated",
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| 39 |
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"status": "skipped"
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| 40 |
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},
|
| 41 |
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|
| 42 |
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|
| 43 |
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"attempts": [
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| 44 |
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{
|
| 45 |
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"attempt_id": "4827820e38a2",
|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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"finished_epoch": 1791409391.8462498,
|
| 50 |
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"result": "completed",
|
| 51 |
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"started_at": "2026-10-07T23:42:28+0200",
|
| 52 |
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"started_epoch": 1791409348.0256195
|
| 53 |
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}
|
| 54 |
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],
|
| 55 |
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"message": "Patch features extracted.",
|
| 56 |
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"outputs": {
|
| 57 |
+
"coords_path": {
|
| 58 |
+
"bytes": 11512,
|
| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/30868_patches.h5"
|
| 61 |
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},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 140744,
|
| 64 |
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"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/features_conch_v1/30868.h5"
|
| 66 |
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}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
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},
|
| 71 |
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"segmentation": {
|
| 72 |
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"_active_attempt_id": null,
|
| 73 |
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"attempts": [],
|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
+
"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
+
"bytes": 138741,
|
| 78 |
+
"exists": true,
|
| 79 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30868.jpg"
|
| 80 |
+
}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
+
"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T23:43:11+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30868__bfcce00ef2a8.json
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
|
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|
|
|
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|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
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|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
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|
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|
|
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|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
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|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
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"mpp": 0.5
|
| 4 |
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},
|
| 5 |
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"resume": {
|
| 6 |
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"last_status": "completed",
|
| 7 |
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"last_task": "patch_features:conch_v1",
|
| 8 |
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"last_updated_at": "2026-10-07T18:25:01+0200"
|
| 9 |
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},
|
| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540692/wsi-cache-16540692/gpu_0/batch_15/30868.tif",
|
| 13 |
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"ext": ".tif",
|
| 14 |
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"id": "30868.tif__bfcce00ef2a8",
|
| 15 |
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"name": "30868",
|
| 16 |
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"reader_type": "OpenSlideWSI",
|
| 17 |
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"rel_path": null
|
| 18 |
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},
|
| 19 |
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"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
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"patch_features": {
|
| 22 |
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"conch_v1": "completed"
|
| 23 |
+
},
|
| 24 |
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"segmentation": "skipped (already_segmented)"
|
| 25 |
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},
|
| 26 |
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"tasks": {
|
| 27 |
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"coords": {
|
| 28 |
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|
| 29 |
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|
| 30 |
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"message": "Patch coords already generated; skipping.",
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| 31 |
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|
| 32 |
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| 33 |
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| 34 |
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| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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| 41 |
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|
| 42 |
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| 43 |
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| 44 |
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| 45 |
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| 46 |
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| 47 |
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| 48 |
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| 49 |
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| 50 |
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| 52 |
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| 53 |
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|
| 54 |
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],
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| 55 |
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"message": "Patch features extracted.",
|
| 56 |
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"outputs": {
|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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"bytes": 138741,
|
| 78 |
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"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30868.jpg"
|
| 80 |
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}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
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|
| 85 |
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| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T18:25:01+0200"
|
| 88 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30868__c55f88a99b81.json
ADDED
|
@@ -0,0 +1,422 @@
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| 1 |
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{
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| 2 |
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| 3 |
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| 4 |
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| 5 |
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| 6 |
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],
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| 7 |
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| 8 |
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| 9 |
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| 10 |
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| 11 |
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| 12 |
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| 13 |
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| 14 |
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| 15 |
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| 17 |
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| 21 |
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Run-Information/prep/UBC-OCEAN/wsi_states/30868__d1df6f3ac874.json
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"last_task": "patch_features:keep",
|
| 8 |
+
"last_updated_at": "2026-10-07T16:25:25+0200"
|
| 9 |
+
},
|
| 10 |
+
"schema_version": 2,
|
| 11 |
+
"slide": {
|
| 12 |
+
"abs_path": "/local/jobs/u25798_16540466/wsi-cache-16540466/gpu_0/batch_15/30868.tif",
|
| 13 |
+
"ext": ".tif",
|
| 14 |
+
"id": "30868.tif__d1df6f3ac874",
|
| 15 |
+
"name": "30868",
|
| 16 |
+
"reader_type": "OpenSlideWSI",
|
| 17 |
+
"rel_path": null
|
| 18 |
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},
|
| 19 |
+
"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
+
"patch_features": {
|
| 22 |
+
"keep": "completed"
|
| 23 |
+
},
|
| 24 |
+
"segmentation": "skipped (already_segmented)"
|
| 25 |
+
},
|
| 26 |
+
"tasks": {
|
| 27 |
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"coords": {
|
| 28 |
+
"_active_attempt_id": null,
|
| 29 |
+
"attempts": [],
|
| 30 |
+
"message": "Patch coords already generated; skipping.",
|
| 31 |
+
"outputs": {
|
| 32 |
+
"coords_h5": {
|
| 33 |
+
"bytes": 547624,
|
| 34 |
+
"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/30868_patches.h5"
|
| 36 |
+
}
|
| 37 |
+
},
|
| 38 |
+
"reason": "already_generated",
|
| 39 |
+
"status": "skipped"
|
| 40 |
+
},
|
| 41 |
+
"patch_features:keep": {
|
| 42 |
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"_active_attempt_id": null,
|
| 43 |
+
"attempts": [
|
| 44 |
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{
|
| 45 |
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"attempt_id": "8f38f4cd4d6a",
|
| 46 |
+
"duration_s": 33.66843843460083,
|
| 47 |
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|
| 48 |
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|
| 49 |
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"finished_epoch": 1791383125.2816546,
|
| 50 |
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"result": "completed",
|
| 51 |
+
"started_at": "2026-10-07T16:24:51+0200",
|
| 52 |
+
"started_epoch": 1791383091.6132162
|
| 53 |
+
}
|
| 54 |
+
],
|
| 55 |
+
"message": "Patch features extracted.",
|
| 56 |
+
"outputs": {
|
| 57 |
+
"coords_path": {
|
| 58 |
+
"bytes": 547624,
|
| 59 |
+
"exists": true,
|
| 60 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/30868_patches.h5"
|
| 61 |
+
},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 27166936,
|
| 64 |
+
"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/features_keep/30868.h5"
|
| 66 |
+
}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
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},
|
| 71 |
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"segmentation": {
|
| 72 |
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"_active_attempt_id": null,
|
| 73 |
+
"attempts": [],
|
| 74 |
+
"message": "Tissue already segmented; skipping.",
|
| 75 |
+
"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
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"bytes": 138741,
|
| 78 |
+
"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30868.jpg"
|
| 80 |
+
}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
+
"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T16:25:25+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30868__d7c5881a7005.json
ADDED
|
@@ -0,0 +1,88 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
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|
|
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|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"mpp": 0.5
|
| 4 |
+
},
|
| 5 |
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| 6 |
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"last_status": "completed",
|
| 7 |
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"last_task": "patch_features:keep",
|
| 8 |
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"last_updated_at": "2026-10-07T20:03:30+0200"
|
| 9 |
+
},
|
| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540615/wsi-cache-16540615/gpu_0/batch_15/30868.tif",
|
| 13 |
+
"ext": ".tif",
|
| 14 |
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"id": "30868.tif__d7c5881a7005",
|
| 15 |
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"name": "30868",
|
| 16 |
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"reader_type": "OpenSlideWSI",
|
| 17 |
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"rel_path": null
|
| 18 |
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},
|
| 19 |
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"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
+
"patch_features": {
|
| 22 |
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"keep": "completed"
|
| 23 |
+
},
|
| 24 |
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"segmentation": "skipped (already_segmented)"
|
| 25 |
+
},
|
| 26 |
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"tasks": {
|
| 27 |
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"coords": {
|
| 28 |
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"_active_attempt_id": null,
|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
+
"outputs": {
|
| 32 |
+
"coords_h5": {
|
| 33 |
+
"bytes": 25080,
|
| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/30868_patches.h5"
|
| 36 |
+
}
|
| 37 |
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},
|
| 38 |
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"reason": "already_generated",
|
| 39 |
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"status": "skipped"
|
| 40 |
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},
|
| 41 |
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"patch_features:keep": {
|
| 42 |
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"_active_attempt_id": null,
|
| 43 |
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"attempts": [
|
| 44 |
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{
|
| 45 |
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"attempt_id": "729f5f66d2ac",
|
| 46 |
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"duration_s": 10.213541507720947,
|
| 47 |
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|
| 48 |
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|
| 49 |
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"finished_epoch": 1791396210.2591987,
|
| 50 |
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|
| 51 |
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"started_at": "2026-10-07T20:03:20+0200",
|
| 52 |
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"started_epoch": 1791396200.0456572
|
| 53 |
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}
|
| 54 |
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],
|
| 55 |
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"message": "Patch features extracted.",
|
| 56 |
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"outputs": {
|
| 57 |
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"coords_path": {
|
| 58 |
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"bytes": 25080,
|
| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/30868_patches.h5"
|
| 61 |
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},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 624552,
|
| 64 |
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"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/features_keep/30868.h5"
|
| 66 |
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}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
+
},
|
| 71 |
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"segmentation": {
|
| 72 |
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"_active_attempt_id": null,
|
| 73 |
+
"attempts": [],
|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
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"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
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"bytes": 138741,
|
| 78 |
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"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30868.jpg"
|
| 80 |
+
}
|
| 81 |
+
},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T20:03:30+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30868__e9b68d52728d.json
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
|
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|
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|
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|
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|
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|
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|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
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"mpp": 0.5
|
| 4 |
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},
|
| 5 |
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"resume": {
|
| 6 |
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"last_status": "completed",
|
| 7 |
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"last_task": "patch_features:keep",
|
| 8 |
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"last_updated_at": "2026-10-07T17:31:24+0200"
|
| 9 |
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},
|
| 10 |
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|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540613/wsi-cache-16540613/gpu_0/batch_15/30868.tif",
|
| 13 |
+
"ext": ".tif",
|
| 14 |
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"id": "30868.tif__e9b68d52728d",
|
| 15 |
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"name": "30868",
|
| 16 |
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"reader_type": "OpenSlideWSI",
|
| 17 |
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"rel_path": null
|
| 18 |
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},
|
| 19 |
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"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
+
"patch_features": {
|
| 22 |
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"keep": "completed"
|
| 23 |
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},
|
| 24 |
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"segmentation": "skipped (already_segmented)"
|
| 25 |
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},
|
| 26 |
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"tasks": {
|
| 27 |
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"coords": {
|
| 28 |
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"_active_attempt_id": null,
|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
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"outputs": {
|
| 32 |
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"coords_h5": {
|
| 33 |
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"bytes": 25080,
|
| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/30868_patches.h5"
|
| 36 |
+
}
|
| 37 |
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},
|
| 38 |
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"reason": "already_generated",
|
| 39 |
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"status": "skipped"
|
| 40 |
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},
|
| 41 |
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"patch_features:keep": {
|
| 42 |
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"_active_attempt_id": null,
|
| 43 |
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"attempts": [
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| 44 |
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{
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| 45 |
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|
| 46 |
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"duration_s": 25.59075093269348,
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| 47 |
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|
| 48 |
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| 49 |
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|
| 50 |
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"result": "completed",
|
| 51 |
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|
| 52 |
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"started_epoch": 1791387058.4484847
|
| 53 |
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}
|
| 54 |
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],
|
| 55 |
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"message": "Patch features extracted.",
|
| 56 |
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"outputs": {
|
| 57 |
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"coords_path": {
|
| 58 |
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"bytes": 25080,
|
| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/30868_patches.h5"
|
| 61 |
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},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 624552,
|
| 64 |
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"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/features_keep/30868.h5"
|
| 66 |
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}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
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},
|
| 71 |
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"segmentation": {
|
| 72 |
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|
| 73 |
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"attempts": [],
|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
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"outputs": {
|
| 76 |
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"contour_jpg": {
|
| 77 |
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"bytes": 138741,
|
| 78 |
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"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30868.jpg"
|
| 80 |
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}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T17:31:24+0200"
|
| 88 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30868__fca71e0dd4bd.json
ADDED
|
@@ -0,0 +1,88 @@
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|
| 1 |
+
{
|
| 2 |
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| 3 |
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| 4 |
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| 5 |
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| 8 |
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| 9 |
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| 10 |
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|
| 11 |
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|
| 12 |
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|
| 13 |
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"ext": ".tif",
|
| 14 |
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"id": "30868.tif__fca71e0dd4bd",
|
| 15 |
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"name": "30868",
|
| 16 |
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|
| 17 |
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|
| 18 |
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| 19 |
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| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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|
| 25 |
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| 26 |
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| 27 |
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| 28 |
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| 29 |
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|
| 30 |
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|
| 31 |
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| 32 |
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|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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| 38 |
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|
| 39 |
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|
| 40 |
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| 41 |
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| 42 |
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| 44 |
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| 45 |
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| 46 |
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| 49 |
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| 50 |
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| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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"outputs": {
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| 57 |
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|
| 58 |
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| 59 |
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| 62 |
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| 63 |
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| 64 |
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|
| 65 |
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|
| 66 |
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| 67 |
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| 68 |
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"reason": null,
|
| 69 |
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|
| 70 |
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| 71 |
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| 72 |
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| 73 |
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|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
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"outputs": {
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| 76 |
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|
| 77 |
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"bytes": 138741,
|
| 78 |
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"exists": true,
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| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30868.jpg"
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| 80 |
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}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
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}
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| 85 |
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},
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| 86 |
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"trident_version": "0.3.0",
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| 87 |
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"updated_at": "2026-10-07T18:36:51+0200"
|
| 88 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3092__049cbf05a9d7.json
ADDED
|
@@ -0,0 +1,442 @@
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| 1 |
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{
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| 2 |
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| 3 |
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| 4 |
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| 5 |
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| 7 |
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| 8 |
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| 9 |
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| 10 |
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| 29 |
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| 427 |
+
"exists": true,
|
| 428 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_224px_0px_overlap/features_virchow/3092.h5"
|
| 429 |
+
},
|
| 430 |
+
"slide_features_path": {
|
| 431 |
+
"bytes": 430832,
|
| 432 |
+
"exists": true,
|
| 433 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_224px_0px_overlap/slide_features_prism/3092.h5"
|
| 434 |
+
}
|
| 435 |
+
},
|
| 436 |
+
"reason": null,
|
| 437 |
+
"status": "completed"
|
| 438 |
+
}
|
| 439 |
+
},
|
| 440 |
+
"trident_version": "0.3.0",
|
| 441 |
+
"updated_at": "2026-10-09T03:47:59+0200"
|
| 442 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3092__15fb4468b898.json
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"mpp": 0.5
|
| 4 |
+
},
|
| 5 |
+
"resume": {
|
| 6 |
+
"last_status": "completed",
|
| 7 |
+
"last_task": "patch_features:keep",
|
| 8 |
+
"last_updated_at": "2026-10-07T13:36:19+0200"
|
| 9 |
+
},
|
| 10 |
+
"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
+
"abs_path": "/local/jobs/u25798_16540466/wsi-cache-16540466/gpu_0/batch_1/3092.tif",
|
| 13 |
+
"ext": ".tif",
|
| 14 |
+
"id": "3092.tif__15fb4468b898",
|
| 15 |
+
"name": "3092",
|
| 16 |
+
"reader_type": "OpenSlideWSI",
|
| 17 |
+
"rel_path": null
|
| 18 |
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},
|
| 19 |
+
"summary": {
|
| 20 |
+
"coords": "skipped (already_generated)",
|
| 21 |
+
"patch_features": {
|
| 22 |
+
"keep": "completed"
|
| 23 |
+
},
|
| 24 |
+
"segmentation": "skipped (already_segmented)"
|
| 25 |
+
},
|
| 26 |
+
"tasks": {
|
| 27 |
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"coords": {
|
| 28 |
+
"_active_attempt_id": null,
|
| 29 |
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"attempts": [],
|
| 30 |
+
"message": "Patch coords already generated; skipping.",
|
| 31 |
+
"outputs": {
|
| 32 |
+
"coords_h5": {
|
| 33 |
+
"bytes": 294096,
|
| 34 |
+
"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/3092_patches.h5"
|
| 36 |
+
}
|
| 37 |
+
},
|
| 38 |
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"reason": "already_generated",
|
| 39 |
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"status": "skipped"
|
| 40 |
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},
|
| 41 |
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"patch_features:keep": {
|
| 42 |
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"_active_attempt_id": null,
|
| 43 |
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"attempts": [
|
| 44 |
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{
|
| 45 |
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"attempt_id": "a362ab809b74",
|
| 46 |
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"duration_s": 16.183852434158325,
|
| 47 |
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"error": null,
|
| 48 |
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"finished_at": "2026-10-07T13:36:19+0200",
|
| 49 |
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"finished_epoch": 1791372979.302917,
|
| 50 |
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"result": "completed",
|
| 51 |
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"started_at": "2026-10-07T13:36:03+0200",
|
| 52 |
+
"started_epoch": 1791372963.1190646
|
| 53 |
+
}
|
| 54 |
+
],
|
| 55 |
+
"message": "Patch features extracted.",
|
| 56 |
+
"outputs": {
|
| 57 |
+
"coords_path": {
|
| 58 |
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"bytes": 294096,
|
| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/3092_patches.h5"
|
| 61 |
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},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 14264664,
|
| 64 |
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"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/features_keep/3092.h5"
|
| 66 |
+
}
|
| 67 |
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},
|
| 68 |
+
"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
+
},
|
| 71 |
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"segmentation": {
|
| 72 |
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"_active_attempt_id": null,
|
| 73 |
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"attempts": [],
|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
+
"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
+
"bytes": 185912,
|
| 78 |
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"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3092.jpg"
|
| 80 |
+
}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
+
}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T13:36:19+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3092__340f70705fb1.json
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
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"mpp": 0.5
|
| 4 |
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},
|
| 5 |
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"resume": {
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| 6 |
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"last_status": "completed",
|
| 7 |
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"last_task": "patch_features:conch_v1",
|
| 8 |
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"last_updated_at": "2026-10-07T17:15:21+0200"
|
| 9 |
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},
|
| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540692/wsi-cache-16540692/gpu_0/batch_1/3092.tif",
|
| 13 |
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"ext": ".tif",
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| 14 |
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"id": "3092.tif__340f70705fb1",
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| 15 |
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"name": "3092",
|
| 16 |
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|
| 17 |
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|
| 18 |
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| 19 |
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| 20 |
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|
| 21 |
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| 22 |
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|
| 23 |
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|
| 24 |
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"segmentation": "skipped (already_segmented)"
|
| 25 |
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},
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| 26 |
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| 27 |
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| 28 |
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|
| 29 |
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|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
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"outputs": {
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| 32 |
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"coords_h5": {
|
| 33 |
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| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_1024px_0px_overlap/patches/3092_patches.h5"
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| 36 |
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}
|
| 37 |
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},
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| 38 |
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"reason": "already_generated",
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| 39 |
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| 40 |
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| 41 |
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| 42 |
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| 43 |
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| 44 |
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| 45 |
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| 46 |
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| 47 |
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| 48 |
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| 49 |
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|
| 50 |
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| 51 |
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| 52 |
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| 53 |
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}
|
| 54 |
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],
|
| 55 |
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"message": "Patch features extracted.",
|
| 56 |
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"outputs": {
|
| 57 |
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"coords_path": {
|
| 58 |
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"bytes": 17800,
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| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_1024px_0px_overlap/patches/3092_patches.h5"
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| 61 |
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},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 230088,
|
| 64 |
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"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_1024px_0px_overlap/features_conch_v1/3092.h5"
|
| 66 |
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}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
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},
|
| 71 |
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"segmentation": {
|
| 72 |
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"_active_attempt_id": null,
|
| 73 |
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"attempts": [],
|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
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"outputs": {
|
| 76 |
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|
| 77 |
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"bytes": 185912,
|
| 78 |
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"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3092.jpg"
|
| 80 |
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}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
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| 84 |
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}
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| 85 |
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},
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| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T17:15:21+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3092__49111ad26717.json
ADDED
|
@@ -0,0 +1,127 @@
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
|
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|
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|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"dimensions": [
|
| 4 |
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38308,
|
| 5 |
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20600
|
| 6 |
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],
|
| 7 |
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"level_count": 1,
|
| 8 |
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"mag": 20,
|
| 9 |
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|
| 10 |
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},
|
| 11 |
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| 12 |
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"last_status": "completed",
|
| 13 |
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"last_task": "slide_features:titan",
|
| 14 |
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"last_updated_at": "2026-10-07T13:40:51+0200"
|
| 15 |
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},
|
| 16 |
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"schema_version": 2,
|
| 17 |
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"slide": {
|
| 18 |
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"abs_path": "/local/jobs/u25798_16540458/wsi-cache-16540458/gpu_0/batch_1/3092.tif",
|
| 19 |
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"ext": ".tif",
|
| 20 |
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"id": "3092.tif__49111ad26717",
|
| 21 |
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"name": "3092",
|
| 22 |
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"reader_type": "OpenSlideWSI",
|
| 23 |
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|
| 24 |
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},
|
| 25 |
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"summary": {
|
| 26 |
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"coords": "skipped (already_generated)",
|
| 27 |
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"patch_features": {
|
| 28 |
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"conch_v15": "completed"
|
| 29 |
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},
|
| 30 |
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"segmentation": "skipped (already_segmented)",
|
| 31 |
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"slide_features": {
|
| 32 |
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"titan": "completed"
|
| 33 |
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}
|
| 34 |
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},
|
| 35 |
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"tasks": {
|
| 36 |
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|
| 37 |
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"_active_attempt_id": null,
|
| 38 |
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"attempts": [],
|
| 39 |
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"message": "Patch coords already generated; skipping.",
|
| 40 |
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"outputs": {
|
| 41 |
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"coords_h5": {
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| 42 |
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"bytes": 84592,
|
| 43 |
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"exists": true,
|
| 44 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/patches/3092_patches.h5"
|
| 45 |
+
}
|
| 46 |
+
},
|
| 47 |
+
"reason": "already_generated",
|
| 48 |
+
"status": "skipped"
|
| 49 |
+
},
|
| 50 |
+
"patch_features:conch_v15": {
|
| 51 |
+
"_active_attempt_id": null,
|
| 52 |
+
"attempts": [
|
| 53 |
+
{
|
| 54 |
+
"attempt_id": "81e796a88127",
|
| 55 |
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"duration_s": 20.51128387451172,
|
| 56 |
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|
| 57 |
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"finished_at": "2026-10-07T13:39:21+0200",
|
| 58 |
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"finished_epoch": 1791373161.6913865,
|
| 59 |
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"result": "completed",
|
| 60 |
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"started_at": "2026-10-07T13:39:01+0200",
|
| 61 |
+
"started_epoch": 1791373141.1801026
|
| 62 |
+
}
|
| 63 |
+
],
|
| 64 |
+
"message": "Patch features extracted.",
|
| 65 |
+
"outputs": {
|
| 66 |
+
"coords_path": {
|
| 67 |
+
"bytes": 84592,
|
| 68 |
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"exists": true,
|
| 69 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/patches/3092_patches.h5"
|
| 70 |
+
},
|
| 71 |
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"features_path": {
|
| 72 |
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"bytes": 3815896,
|
| 73 |
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"exists": true,
|
| 74 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/features_conch_v15/3092.h5"
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"reason": null,
|
| 78 |
+
"status": "completed"
|
| 79 |
+
},
|
| 80 |
+
"segmentation": {
|
| 81 |
+
"_active_attempt_id": null,
|
| 82 |
+
"attempts": [],
|
| 83 |
+
"message": "Tissue already segmented; skipping.",
|
| 84 |
+
"outputs": {
|
| 85 |
+
"contour_jpg": {
|
| 86 |
+
"bytes": 185912,
|
| 87 |
+
"exists": true,
|
| 88 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3092.jpg"
|
| 89 |
+
}
|
| 90 |
+
},
|
| 91 |
+
"reason": "already_segmented",
|
| 92 |
+
"status": "skipped"
|
| 93 |
+
},
|
| 94 |
+
"slide_features:titan": {
|
| 95 |
+
"_active_attempt_id": null,
|
| 96 |
+
"attempts": [
|
| 97 |
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{
|
| 98 |
+
"attempt_id": "1cdb19c74cff",
|
| 99 |
+
"duration_s": 0.3276333808898926,
|
| 100 |
+
"error": null,
|
| 101 |
+
"finished_at": "2026-10-07T13:40:51+0200",
|
| 102 |
+
"finished_epoch": 1791373251.9316244,
|
| 103 |
+
"result": "completed",
|
| 104 |
+
"started_at": "2026-10-07T13:40:51+0200",
|
| 105 |
+
"started_epoch": 1791373251.603991
|
| 106 |
+
}
|
| 107 |
+
],
|
| 108 |
+
"message": "Slide features extracted.",
|
| 109 |
+
"outputs": {
|
| 110 |
+
"patch_features_path": {
|
| 111 |
+
"bytes": 3815896,
|
| 112 |
+
"exists": true,
|
| 113 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/features_conch_v15/3092.h5"
|
| 114 |
+
},
|
| 115 |
+
"slide_features_path": {
|
| 116 |
+
"bytes": 119064,
|
| 117 |
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"exists": true,
|
| 118 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/slide_features_titan/3092.h5"
|
| 119 |
+
}
|
| 120 |
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},
|
| 121 |
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"reason": null,
|
| 122 |
+
"status": "completed"
|
| 123 |
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}
|
| 124 |
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},
|
| 125 |
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"trident_version": "0.3.0",
|
| 126 |
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"updated_at": "2026-10-07T13:40:51+0200"
|
| 127 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3092__51768fa602e3.json
ADDED
|
@@ -0,0 +1,88 @@
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|
|
|
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|
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|
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|
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|
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|
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|
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|
|
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|
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|
|
|
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|
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|
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|
|
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|
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|
|
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|
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|
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|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"mpp": 0.5
|
| 4 |
+
},
|
| 5 |
+
"resume": {
|
| 6 |
+
"last_status": "completed",
|
| 7 |
+
"last_task": "patch_features:conch_v1",
|
| 8 |
+
"last_updated_at": "2026-10-07T17:53:45+0200"
|
| 9 |
+
},
|
| 10 |
+
"schema_version": 2,
|
| 11 |
+
"slide": {
|
| 12 |
+
"abs_path": "/local/jobs/u25798_16540688/wsi-cache-16540688/gpu_0/batch_1/3092.tif",
|
| 13 |
+
"ext": ".tif",
|
| 14 |
+
"id": "3092.tif__51768fa602e3",
|
| 15 |
+
"name": "3092",
|
| 16 |
+
"reader_type": "OpenSlideWSI",
|
| 17 |
+
"rel_path": null
|
| 18 |
+
},
|
| 19 |
+
"summary": {
|
| 20 |
+
"coords": "skipped (already_generated)",
|
| 21 |
+
"patch_features": {
|
| 22 |
+
"conch_v1": "completed"
|
| 23 |
+
},
|
| 24 |
+
"segmentation": "skipped (already_segmented)"
|
| 25 |
+
},
|
| 26 |
+
"tasks": {
|
| 27 |
+
"coords": {
|
| 28 |
+
"_active_attempt_id": null,
|
| 29 |
+
"attempts": [],
|
| 30 |
+
"message": "Patch coords already generated; skipping.",
|
| 31 |
+
"outputs": {
|
| 32 |
+
"coords_h5": {
|
| 33 |
+
"bytes": 84656,
|
| 34 |
+
"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_256px_0px_overlap/patches/3092_patches.h5"
|
| 36 |
+
}
|
| 37 |
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},
|
| 38 |
+
"reason": "already_generated",
|
| 39 |
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"status": "skipped"
|
| 40 |
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},
|
| 41 |
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"patch_features:conch_v1": {
|
| 42 |
+
"_active_attempt_id": null,
|
| 43 |
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"attempts": [
|
| 44 |
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{
|
| 45 |
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"attempt_id": "2996354be53d",
|
| 46 |
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"duration_s": 46.37879776954651,
|
| 47 |
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"error": null,
|
| 48 |
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"finished_at": "2026-10-07T17:53:45+0200",
|
| 49 |
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"finished_epoch": 1791388425.7496245,
|
| 50 |
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"result": "completed",
|
| 51 |
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"started_at": "2026-10-07T17:52:59+0200",
|
| 52 |
+
"started_epoch": 1791388379.3708267
|
| 53 |
+
}
|
| 54 |
+
],
|
| 55 |
+
"message": "Patch features extracted.",
|
| 56 |
+
"outputs": {
|
| 57 |
+
"coords_path": {
|
| 58 |
+
"bytes": 84656,
|
| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_256px_0px_overlap/patches/3092_patches.h5"
|
| 61 |
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},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 2599448,
|
| 64 |
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"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_256px_0px_overlap/features_conch_v1/3092.h5"
|
| 66 |
+
}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
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},
|
| 71 |
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"segmentation": {
|
| 72 |
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"_active_attempt_id": null,
|
| 73 |
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"attempts": [],
|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
+
"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
+
"bytes": 185912,
|
| 78 |
+
"exists": true,
|
| 79 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3092.jpg"
|
| 80 |
+
}
|
| 81 |
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},
|
| 82 |
+
"reason": "already_segmented",
|
| 83 |
+
"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
+
"updated_at": "2026-10-07T17:53:45+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3092__7924f3362ce5.json
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
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|
|
|
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|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
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"mpp": 0.5
|
| 4 |
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},
|
| 5 |
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"resume": {
|
| 6 |
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"last_status": "completed",
|
| 7 |
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"last_task": "patch_features:keep",
|
| 8 |
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"last_updated_at": "2026-10-07T15:35:01+0200"
|
| 9 |
+
},
|
| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540613/wsi-cache-16540613/gpu_0/batch_1/3092.tif",
|
| 13 |
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"ext": ".tif",
|
| 14 |
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"id": "3092.tif__7924f3362ce5",
|
| 15 |
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"name": "3092",
|
| 16 |
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"reader_type": "OpenSlideWSI",
|
| 17 |
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"rel_path": null
|
| 18 |
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},
|
| 19 |
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"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
+
"patch_features": {
|
| 22 |
+
"keep": "completed"
|
| 23 |
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},
|
| 24 |
+
"segmentation": "skipped (already_segmented)"
|
| 25 |
+
},
|
| 26 |
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"tasks": {
|
| 27 |
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"coords": {
|
| 28 |
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"_active_attempt_id": null,
|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
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"outputs": {
|
| 32 |
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"coords_h5": {
|
| 33 |
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"bytes": 17800,
|
| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/3092_patches.h5"
|
| 36 |
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}
|
| 37 |
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},
|
| 38 |
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"reason": "already_generated",
|
| 39 |
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"status": "skipped"
|
| 40 |
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},
|
| 41 |
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"patch_features:keep": {
|
| 42 |
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"_active_attempt_id": null,
|
| 43 |
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"attempts": [
|
| 44 |
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{
|
| 45 |
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"attempt_id": "923c1a56aaef",
|
| 46 |
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"duration_s": 12.338051557540894,
|
| 47 |
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|
| 48 |
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|
| 49 |
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"finished_epoch": 1791380101.0494943,
|
| 50 |
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"result": "completed",
|
| 51 |
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"started_at": "2026-10-07T15:34:48+0200",
|
| 52 |
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"started_epoch": 1791380088.7114427
|
| 53 |
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}
|
| 54 |
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],
|
| 55 |
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"message": "Patch features extracted.",
|
| 56 |
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"outputs": {
|
| 57 |
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"coords_path": {
|
| 58 |
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"bytes": 17800,
|
| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/3092_patches.h5"
|
| 61 |
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},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 332488,
|
| 64 |
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"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/features_keep/3092.h5"
|
| 66 |
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}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
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},
|
| 71 |
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"segmentation": {
|
| 72 |
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"_active_attempt_id": null,
|
| 73 |
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"attempts": [],
|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
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"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
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"bytes": 185912,
|
| 78 |
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"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3092.jpg"
|
| 80 |
+
}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T15:35:01+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3092__83e1e965e7b2.json
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
|
|
|
|
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|
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|
|
|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"mpp": 0.5
|
| 4 |
+
},
|
| 5 |
+
"resume": {
|
| 6 |
+
"last_status": "completed",
|
| 7 |
+
"last_task": "patch_features:keep",
|
| 8 |
+
"last_updated_at": "2026-10-07T20:09:02+0200"
|
| 9 |
+
},
|
| 10 |
+
"schema_version": 2,
|
| 11 |
+
"slide": {
|
| 12 |
+
"abs_path": "/local/jobs/u25798_16540467/wsi-cache-16540467/gpu_0/batch_1/3092.tif",
|
| 13 |
+
"ext": ".tif",
|
| 14 |
+
"id": "3092.tif__83e1e965e7b2",
|
| 15 |
+
"name": "3092",
|
| 16 |
+
"reader_type": "OpenSlideWSI",
|
| 17 |
+
"rel_path": null
|
| 18 |
+
},
|
| 19 |
+
"summary": {
|
| 20 |
+
"coords": "skipped (already_generated)",
|
| 21 |
+
"patch_features": {
|
| 22 |
+
"keep": "completed"
|
| 23 |
+
},
|
| 24 |
+
"segmentation": "skipped (already_segmented)"
|
| 25 |
+
},
|
| 26 |
+
"tasks": {
|
| 27 |
+
"coords": {
|
| 28 |
+
"_active_attempt_id": null,
|
| 29 |
+
"attempts": [],
|
| 30 |
+
"message": "Patch coords already generated; skipping.",
|
| 31 |
+
"outputs": {
|
| 32 |
+
"coords_h5": {
|
| 33 |
+
"bytes": 294096,
|
| 34 |
+
"exists": true,
|
| 35 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/3092_patches.h5"
|
| 36 |
+
}
|
| 37 |
+
},
|
| 38 |
+
"reason": "already_generated",
|
| 39 |
+
"status": "skipped"
|
| 40 |
+
},
|
| 41 |
+
"patch_features:keep": {
|
| 42 |
+
"_active_attempt_id": null,
|
| 43 |
+
"attempts": [
|
| 44 |
+
{
|
| 45 |
+
"attempt_id": "c58e832a51fc",
|
| 46 |
+
"duration_s": 19.087050437927246,
|
| 47 |
+
"error": null,
|
| 48 |
+
"finished_at": "2026-10-07T20:09:02+0200",
|
| 49 |
+
"finished_epoch": 1791396542.5901916,
|
| 50 |
+
"result": "completed",
|
| 51 |
+
"started_at": "2026-10-07T20:08:43+0200",
|
| 52 |
+
"started_epoch": 1791396523.5031412
|
| 53 |
+
}
|
| 54 |
+
],
|
| 55 |
+
"message": "Patch features extracted.",
|
| 56 |
+
"outputs": {
|
| 57 |
+
"coords_path": {
|
| 58 |
+
"bytes": 294096,
|
| 59 |
+
"exists": true,
|
| 60 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/3092_patches.h5"
|
| 61 |
+
},
|
| 62 |
+
"features_path": {
|
| 63 |
+
"bytes": 14264664,
|
| 64 |
+
"exists": true,
|
| 65 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/features_keep/3092.h5"
|
| 66 |
+
}
|
| 67 |
+
},
|
| 68 |
+
"reason": null,
|
| 69 |
+
"status": "completed"
|
| 70 |
+
},
|
| 71 |
+
"segmentation": {
|
| 72 |
+
"_active_attempt_id": null,
|
| 73 |
+
"attempts": [],
|
| 74 |
+
"message": "Tissue already segmented; skipping.",
|
| 75 |
+
"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
+
"bytes": 185912,
|
| 78 |
+
"exists": true,
|
| 79 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3092.jpg"
|
| 80 |
+
}
|
| 81 |
+
},
|
| 82 |
+
"reason": "already_segmented",
|
| 83 |
+
"status": "skipped"
|
| 84 |
+
}
|
| 85 |
+
},
|
| 86 |
+
"trident_version": "0.3.0",
|
| 87 |
+
"updated_at": "2026-10-07T20:09:02+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3092__8736229f1b7e.json
ADDED
|
@@ -0,0 +1,127 @@
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"dimensions": [
|
| 4 |
+
38308,
|
| 5 |
+
20600
|
| 6 |
+
],
|
| 7 |
+
"level_count": 1,
|
| 8 |
+
"mag": 20,
|
| 9 |
+
"mpp": 0.5
|
| 10 |
+
},
|
| 11 |
+
"resume": {
|
| 12 |
+
"last_status": "completed",
|
| 13 |
+
"last_task": "slide_features:titan",
|
| 14 |
+
"last_updated_at": "2026-10-07T15:31:51+0200"
|
| 15 |
+
},
|
| 16 |
+
"schema_version": 2,
|
| 17 |
+
"slide": {
|
| 18 |
+
"abs_path": "/local/jobs/u25798_16540575/wsi-cache-16540575/gpu_0/batch_1/3092.tif",
|
| 19 |
+
"ext": ".tif",
|
| 20 |
+
"id": "3092.tif__8736229f1b7e",
|
| 21 |
+
"name": "3092",
|
| 22 |
+
"reader_type": "OpenSlideWSI",
|
| 23 |
+
"rel_path": null
|
| 24 |
+
},
|
| 25 |
+
"summary": {
|
| 26 |
+
"coords": "skipped (already_generated)",
|
| 27 |
+
"patch_features": {
|
| 28 |
+
"conch_v15": "completed"
|
| 29 |
+
},
|
| 30 |
+
"segmentation": "skipped (already_segmented)",
|
| 31 |
+
"slide_features": {
|
| 32 |
+
"titan": "completed"
|
| 33 |
+
}
|
| 34 |
+
},
|
| 35 |
+
"tasks": {
|
| 36 |
+
"coords": {
|
| 37 |
+
"_active_attempt_id": null,
|
| 38 |
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"attempts": [],
|
| 39 |
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"message": "Patch coords already generated; skipping.",
|
| 40 |
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"outputs": {
|
| 41 |
+
"coords_h5": {
|
| 42 |
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"bytes": 17800,
|
| 43 |
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"exists": true,
|
| 44 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/3092_patches.h5"
|
| 45 |
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}
|
| 46 |
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},
|
| 47 |
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"reason": "already_generated",
|
| 48 |
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"status": "skipped"
|
| 49 |
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},
|
| 50 |
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"patch_features:conch_v15": {
|
| 51 |
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"_active_attempt_id": null,
|
| 52 |
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"attempts": [
|
| 53 |
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{
|
| 54 |
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"attempt_id": "3797f186c288",
|
| 55 |
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"duration_s": 5.492782115936279,
|
| 56 |
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"error": null,
|
| 57 |
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"finished_at": "2026-10-07T15:31:20+0200",
|
| 58 |
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"finished_epoch": 1791379880.5660644,
|
| 59 |
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"result": "completed",
|
| 60 |
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"started_at": "2026-10-07T15:31:15+0200",
|
| 61 |
+
"started_epoch": 1791379875.0732822
|
| 62 |
+
}
|
| 63 |
+
],
|
| 64 |
+
"message": "Patch features extracted.",
|
| 65 |
+
"outputs": {
|
| 66 |
+
"coords_path": {
|
| 67 |
+
"bytes": 17800,
|
| 68 |
+
"exists": true,
|
| 69 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/3092_patches.h5"
|
| 70 |
+
},
|
| 71 |
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"features_path": {
|
| 72 |
+
"bytes": 332488,
|
| 73 |
+
"exists": true,
|
| 74 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/features_conch_v15/3092.h5"
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
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"reason": null,
|
| 78 |
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"status": "completed"
|
| 79 |
+
},
|
| 80 |
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"segmentation": {
|
| 81 |
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"_active_attempt_id": null,
|
| 82 |
+
"attempts": [],
|
| 83 |
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"message": "Tissue already segmented; skipping.",
|
| 84 |
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"outputs": {
|
| 85 |
+
"contour_jpg": {
|
| 86 |
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"bytes": 185912,
|
| 87 |
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"exists": true,
|
| 88 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3092.jpg"
|
| 89 |
+
}
|
| 90 |
+
},
|
| 91 |
+
"reason": "already_segmented",
|
| 92 |
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"status": "skipped"
|
| 93 |
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},
|
| 94 |
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"slide_features:titan": {
|
| 95 |
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"_active_attempt_id": null,
|
| 96 |
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"attempts": [
|
| 97 |
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{
|
| 98 |
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"attempt_id": "3924a9429036",
|
| 99 |
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"duration_s": 0.17368602752685547,
|
| 100 |
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"error": null,
|
| 101 |
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"finished_at": "2026-10-07T15:31:51+0200",
|
| 102 |
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"finished_epoch": 1791379911.8291113,
|
| 103 |
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"result": "completed",
|
| 104 |
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"started_at": "2026-10-07T15:31:51+0200",
|
| 105 |
+
"started_epoch": 1791379911.6554253
|
| 106 |
+
}
|
| 107 |
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],
|
| 108 |
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"message": "Slide features extracted.",
|
| 109 |
+
"outputs": {
|
| 110 |
+
"patch_features_path": {
|
| 111 |
+
"bytes": 332488,
|
| 112 |
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"exists": true,
|
| 113 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/features_conch_v15/3092.h5"
|
| 114 |
+
},
|
| 115 |
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"slide_features_path": {
|
| 116 |
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"bytes": 52976,
|
| 117 |
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"exists": true,
|
| 118 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/slide_features_titan/3092.h5"
|
| 119 |
+
}
|
| 120 |
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},
|
| 121 |
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"reason": null,
|
| 122 |
+
"status": "completed"
|
| 123 |
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}
|
| 124 |
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},
|
| 125 |
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"trident_version": "0.3.0",
|
| 126 |
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"updated_at": "2026-10-07T15:31:51+0200"
|
| 127 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3092__99c7ebab4100.json
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"mpp": 0.5
|
| 4 |
+
},
|
| 5 |
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"resume": {
|
| 6 |
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"last_status": "completed",
|
| 7 |
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"last_task": "patch_features:keep",
|
| 8 |
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"last_updated_at": "2026-10-07T15:30:43+0200"
|
| 9 |
+
},
|
| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540592/wsi-cache-16540592/gpu_0/batch_1/3092.tif",
|
| 13 |
+
"ext": ".tif",
|
| 14 |
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"id": "3092.tif__99c7ebab4100",
|
| 15 |
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"name": "3092",
|
| 16 |
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"reader_type": "OpenSlideWSI",
|
| 17 |
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"rel_path": null
|
| 18 |
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},
|
| 19 |
+
"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
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"patch_features": {
|
| 22 |
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"keep": "completed"
|
| 23 |
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},
|
| 24 |
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"segmentation": "skipped (already_segmented)"
|
| 25 |
+
},
|
| 26 |
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"tasks": {
|
| 27 |
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"coords": {
|
| 28 |
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"_active_attempt_id": null,
|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
+
"outputs": {
|
| 32 |
+
"coords_h5": {
|
| 33 |
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"bytes": 32360,
|
| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/3092_patches.h5"
|
| 36 |
+
}
|
| 37 |
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},
|
| 38 |
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"reason": "already_generated",
|
| 39 |
+
"status": "skipped"
|
| 40 |
+
},
|
| 41 |
+
"patch_features:keep": {
|
| 42 |
+
"_active_attempt_id": null,
|
| 43 |
+
"attempts": [
|
| 44 |
+
{
|
| 45 |
+
"attempt_id": "66747bead001",
|
| 46 |
+
"duration_s": 4.704967975616455,
|
| 47 |
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"error": null,
|
| 48 |
+
"finished_at": "2026-10-07T15:30:43+0200",
|
| 49 |
+
"finished_epoch": 1791379843.8536801,
|
| 50 |
+
"result": "completed",
|
| 51 |
+
"started_at": "2026-10-07T15:30:39+0200",
|
| 52 |
+
"started_epoch": 1791379839.1487122
|
| 53 |
+
}
|
| 54 |
+
],
|
| 55 |
+
"message": "Patch features extracted.",
|
| 56 |
+
"outputs": {
|
| 57 |
+
"coords_path": {
|
| 58 |
+
"bytes": 32360,
|
| 59 |
+
"exists": true,
|
| 60 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/3092_patches.h5"
|
| 61 |
+
},
|
| 62 |
+
"features_path": {
|
| 63 |
+
"bytes": 1079432,
|
| 64 |
+
"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_keep/3092.h5"
|
| 66 |
+
}
|
| 67 |
+
},
|
| 68 |
+
"reason": null,
|
| 69 |
+
"status": "completed"
|
| 70 |
+
},
|
| 71 |
+
"segmentation": {
|
| 72 |
+
"_active_attempt_id": null,
|
| 73 |
+
"attempts": [],
|
| 74 |
+
"message": "Tissue already segmented; skipping.",
|
| 75 |
+
"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
+
"bytes": 185912,
|
| 78 |
+
"exists": true,
|
| 79 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3092.jpg"
|
| 80 |
+
}
|
| 81 |
+
},
|
| 82 |
+
"reason": "already_segmented",
|
| 83 |
+
"status": "skipped"
|
| 84 |
+
}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T15:30:43+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3092__a8b263031b32.json
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
|
|
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|
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|
|
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|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"mpp": 0.5
|
| 4 |
+
},
|
| 5 |
+
"resume": {
|
| 6 |
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"last_status": "completed",
|
| 7 |
+
"last_task": "patch_features:keep",
|
| 8 |
+
"last_updated_at": "2026-10-07T19:10:42+0200"
|
| 9 |
+
},
|
| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540615/wsi-cache-16540615/gpu_0/batch_1/3092.tif",
|
| 13 |
+
"ext": ".tif",
|
| 14 |
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"id": "3092.tif__a8b263031b32",
|
| 15 |
+
"name": "3092",
|
| 16 |
+
"reader_type": "OpenSlideWSI",
|
| 17 |
+
"rel_path": null
|
| 18 |
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},
|
| 19 |
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"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
+
"patch_features": {
|
| 22 |
+
"keep": "completed"
|
| 23 |
+
},
|
| 24 |
+
"segmentation": "skipped (already_segmented)"
|
| 25 |
+
},
|
| 26 |
+
"tasks": {
|
| 27 |
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"coords": {
|
| 28 |
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"_active_attempt_id": null,
|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
+
"outputs": {
|
| 32 |
+
"coords_h5": {
|
| 33 |
+
"bytes": 17800,
|
| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/3092_patches.h5"
|
| 36 |
+
}
|
| 37 |
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},
|
| 38 |
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"reason": "already_generated",
|
| 39 |
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"status": "skipped"
|
| 40 |
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},
|
| 41 |
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"patch_features:keep": {
|
| 42 |
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"_active_attempt_id": null,
|
| 43 |
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"attempts": [
|
| 44 |
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{
|
| 45 |
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"attempt_id": "10d81b5bfab9",
|
| 46 |
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"duration_s": 4.482135772705078,
|
| 47 |
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|
| 48 |
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"finished_at": "2026-10-07T19:10:42+0200",
|
| 49 |
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"finished_epoch": 1791393042.357,
|
| 50 |
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"result": "completed",
|
| 51 |
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"started_at": "2026-10-07T19:10:37+0200",
|
| 52 |
+
"started_epoch": 1791393037.8748643
|
| 53 |
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}
|
| 54 |
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],
|
| 55 |
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"message": "Patch features extracted.",
|
| 56 |
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"outputs": {
|
| 57 |
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"coords_path": {
|
| 58 |
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"bytes": 17800,
|
| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/3092_patches.h5"
|
| 61 |
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},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 332488,
|
| 64 |
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"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/features_keep/3092.h5"
|
| 66 |
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}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
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},
|
| 71 |
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"segmentation": {
|
| 72 |
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"_active_attempt_id": null,
|
| 73 |
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"attempts": [],
|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
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"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
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"bytes": 185912,
|
| 78 |
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"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3092.jpg"
|
| 80 |
+
}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T19:10:42+0200"
|
| 88 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3092__b4127e991194.json
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
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|
|
|
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|
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|
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|
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|
|
|
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|
|
|
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|
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|
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|
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|
|
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|
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|
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|
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|
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|
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|
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|
|
|
|
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|
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|
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|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
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|
| 4 |
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},
|
| 5 |
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|
| 6 |
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"last_status": "completed",
|
| 7 |
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"last_task": "patch_features:conch_v1",
|
| 8 |
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"last_updated_at": "2026-10-07T17:17:08+0200"
|
| 9 |
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},
|
| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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|
| 13 |
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"ext": ".tif",
|
| 14 |
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"id": "3092.tif__b4127e991194",
|
| 15 |
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"name": "3092",
|
| 16 |
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"reader_type": "OpenSlideWSI",
|
| 17 |
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"rel_path": null
|
| 18 |
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},
|
| 19 |
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"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
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|
| 22 |
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|
| 23 |
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},
|
| 24 |
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"segmentation": "skipped (already_segmented)"
|
| 25 |
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},
|
| 26 |
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"tasks": {
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| 27 |
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| 28 |
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|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
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"outputs": {
|
| 32 |
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"coords_h5": {
|
| 33 |
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"bytes": 11064,
|
| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/3092_patches.h5"
|
| 36 |
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}
|
| 37 |
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},
|
| 38 |
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"reason": "already_generated",
|
| 39 |
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"status": "skipped"
|
| 40 |
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},
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| 41 |
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"patch_features:conch_v1": {
|
| 42 |
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| 43 |
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| 44 |
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| 45 |
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"attempt_id": "0893c6facb20",
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| 46 |
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| 47 |
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| 48 |
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| 49 |
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|
| 50 |
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"result": "completed",
|
| 51 |
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|
| 52 |
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"started_epoch": 1791386209.6766613
|
| 53 |
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}
|
| 54 |
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],
|
| 55 |
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"message": "Patch features extracted.",
|
| 56 |
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"outputs": {
|
| 57 |
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"coords_path": {
|
| 58 |
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"bytes": 11064,
|
| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/3092_patches.h5"
|
| 61 |
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},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 82952,
|
| 64 |
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"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/features_conch_v1/3092.h5"
|
| 66 |
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}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
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},
|
| 71 |
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"segmentation": {
|
| 72 |
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|
| 73 |
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"attempts": [],
|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
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"outputs": {
|
| 76 |
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"contour_jpg": {
|
| 77 |
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"bytes": 185912,
|
| 78 |
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"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3092.jpg"
|
| 80 |
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}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T17:17:08+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3092__d5b1a0058c4d.json
ADDED
|
@@ -0,0 +1,88 @@
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|
|
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|
|
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|
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|
|
|
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|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
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"mpp": 0.5
|
| 4 |
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},
|
| 5 |
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"resume": {
|
| 6 |
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"last_status": "completed",
|
| 7 |
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"last_task": "patch_features:conch_v1",
|
| 8 |
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"last_updated_at": "2026-10-07T21:03:53+0200"
|
| 9 |
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},
|
| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540702/wsi-cache-16540702/gpu_0/batch_1/3092.tif",
|
| 13 |
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"ext": ".tif",
|
| 14 |
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"id": "3092.tif__d5b1a0058c4d",
|
| 15 |
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"name": "3092",
|
| 16 |
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"reader_type": "OpenSlideWSI",
|
| 17 |
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"rel_path": null
|
| 18 |
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},
|
| 19 |
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"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
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"patch_features": {
|
| 22 |
+
"conch_v1": "completed"
|
| 23 |
+
},
|
| 24 |
+
"segmentation": "skipped (already_segmented)"
|
| 25 |
+
},
|
| 26 |
+
"tasks": {
|
| 27 |
+
"coords": {
|
| 28 |
+
"_active_attempt_id": null,
|
| 29 |
+
"attempts": [],
|
| 30 |
+
"message": "Patch coords already generated; skipping.",
|
| 31 |
+
"outputs": {
|
| 32 |
+
"coords_h5": {
|
| 33 |
+
"bytes": 11064,
|
| 34 |
+
"exists": true,
|
| 35 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/3092_patches.h5"
|
| 36 |
+
}
|
| 37 |
+
},
|
| 38 |
+
"reason": "already_generated",
|
| 39 |
+
"status": "skipped"
|
| 40 |
+
},
|
| 41 |
+
"patch_features:conch_v1": {
|
| 42 |
+
"_active_attempt_id": null,
|
| 43 |
+
"attempts": [
|
| 44 |
+
{
|
| 45 |
+
"attempt_id": "9d231a5b47f4",
|
| 46 |
+
"duration_s": 43.19256854057312,
|
| 47 |
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|
| 48 |
+
"finished_at": "2026-10-07T21:03:53+0200",
|
| 49 |
+
"finished_epoch": 1791399833.0170496,
|
| 50 |
+
"result": "completed",
|
| 51 |
+
"started_at": "2026-10-07T21:03:09+0200",
|
| 52 |
+
"started_epoch": 1791399789.824481
|
| 53 |
+
}
|
| 54 |
+
],
|
| 55 |
+
"message": "Patch features extracted.",
|
| 56 |
+
"outputs": {
|
| 57 |
+
"coords_path": {
|
| 58 |
+
"bytes": 11064,
|
| 59 |
+
"exists": true,
|
| 60 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/3092_patches.h5"
|
| 61 |
+
},
|
| 62 |
+
"features_path": {
|
| 63 |
+
"bytes": 82952,
|
| 64 |
+
"exists": true,
|
| 65 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/features_conch_v1/3092.h5"
|
| 66 |
+
}
|
| 67 |
+
},
|
| 68 |
+
"reason": null,
|
| 69 |
+
"status": "completed"
|
| 70 |
+
},
|
| 71 |
+
"segmentation": {
|
| 72 |
+
"_active_attempt_id": null,
|
| 73 |
+
"attempts": [],
|
| 74 |
+
"message": "Tissue already segmented; skipping.",
|
| 75 |
+
"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
+
"bytes": 185912,
|
| 78 |
+
"exists": true,
|
| 79 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3092.jpg"
|
| 80 |
+
}
|
| 81 |
+
},
|
| 82 |
+
"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T21:03:53+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3092__e1d0e43eba00.json
ADDED
|
@@ -0,0 +1,127 @@
|
|
|
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|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"dimensions": [
|
| 4 |
+
38308,
|
| 5 |
+
20600
|
| 6 |
+
],
|
| 7 |
+
"level_count": 1,
|
| 8 |
+
"mag": 20,
|
| 9 |
+
"mpp": 0.5
|
| 10 |
+
},
|
| 11 |
+
"resume": {
|
| 12 |
+
"last_status": "completed",
|
| 13 |
+
"last_task": "slide_features:titan",
|
| 14 |
+
"last_updated_at": "2026-10-07T15:39:02+0200"
|
| 15 |
+
},
|
| 16 |
+
"schema_version": 2,
|
| 17 |
+
"slide": {
|
| 18 |
+
"abs_path": "/local/jobs/u25798_16540552/wsi-cache-16540552/gpu_0/batch_1/3092.tif",
|
| 19 |
+
"ext": ".tif",
|
| 20 |
+
"id": "3092.tif__e1d0e43eba00",
|
| 21 |
+
"name": "3092",
|
| 22 |
+
"reader_type": "OpenSlideWSI",
|
| 23 |
+
"rel_path": null
|
| 24 |
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},
|
| 25 |
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"summary": {
|
| 26 |
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"coords": "skipped (already_generated)",
|
| 27 |
+
"patch_features": {
|
| 28 |
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"conch_v15": "completed"
|
| 29 |
+
},
|
| 30 |
+
"segmentation": "skipped (already_segmented)",
|
| 31 |
+
"slide_features": {
|
| 32 |
+
"titan": "completed"
|
| 33 |
+
}
|
| 34 |
+
},
|
| 35 |
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"tasks": {
|
| 36 |
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"coords": {
|
| 37 |
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"_active_attempt_id": null,
|
| 38 |
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"attempts": [],
|
| 39 |
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"message": "Patch coords already generated; skipping.",
|
| 40 |
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"outputs": {
|
| 41 |
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"coords_h5": {
|
| 42 |
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"bytes": 32360,
|
| 43 |
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"exists": true,
|
| 44 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/3092_patches.h5"
|
| 45 |
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}
|
| 46 |
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},
|
| 47 |
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"reason": "already_generated",
|
| 48 |
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"status": "skipped"
|
| 49 |
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},
|
| 50 |
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|
| 51 |
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|
| 52 |
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"attempts": [
|
| 53 |
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{
|
| 54 |
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"attempt_id": "3aab409ddae1",
|
| 55 |
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"duration_s": 12.034330368041992,
|
| 56 |
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|
| 57 |
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"finished_at": "2026-10-07T15:34:11+0200",
|
| 58 |
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"finished_epoch": 1791380051.8847415,
|
| 59 |
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|
| 60 |
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"started_at": "2026-10-07T15:33:59+0200",
|
| 61 |
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"started_epoch": 1791380039.8504112
|
| 62 |
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}
|
| 63 |
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],
|
| 64 |
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"message": "Patch features extracted.",
|
| 65 |
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"outputs": {
|
| 66 |
+
"coords_path": {
|
| 67 |
+
"bytes": 32360,
|
| 68 |
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"exists": true,
|
| 69 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/3092_patches.h5"
|
| 70 |
+
},
|
| 71 |
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"features_path": {
|
| 72 |
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"bytes": 1079432,
|
| 73 |
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"exists": true,
|
| 74 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/3092.h5"
|
| 75 |
+
}
|
| 76 |
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},
|
| 77 |
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"reason": null,
|
| 78 |
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"status": "completed"
|
| 79 |
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},
|
| 80 |
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"segmentation": {
|
| 81 |
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"_active_attempt_id": null,
|
| 82 |
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"attempts": [],
|
| 83 |
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"message": "Tissue already segmented; skipping.",
|
| 84 |
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"outputs": {
|
| 85 |
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"contour_jpg": {
|
| 86 |
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"bytes": 185912,
|
| 87 |
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"exists": true,
|
| 88 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3092.jpg"
|
| 89 |
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}
|
| 90 |
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},
|
| 91 |
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"reason": "already_segmented",
|
| 92 |
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"status": "skipped"
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| 93 |
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},
|
| 94 |
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| 95 |
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|
| 96 |
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"attempts": [
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| 97 |
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{
|
| 98 |
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"attempt_id": "f752ae6b2102",
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| 99 |
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"duration_s": 0.2963721752166748,
|
| 100 |
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|
| 101 |
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|
| 102 |
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"finished_epoch": 1791380342.1395257,
|
| 103 |
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|
| 104 |
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|
| 105 |
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"started_epoch": 1791380341.8431535
|
| 106 |
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}
|
| 107 |
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],
|
| 108 |
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"message": "Slide features extracted.",
|
| 109 |
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"outputs": {
|
| 110 |
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"patch_features_path": {
|
| 111 |
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"bytes": 1079432,
|
| 112 |
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"exists": true,
|
| 113 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/3092.h5"
|
| 114 |
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},
|
| 115 |
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"slide_features_path": {
|
| 116 |
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"bytes": 65728,
|
| 117 |
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"exists": true,
|
| 118 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/slide_features_titan/3092.h5"
|
| 119 |
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}
|
| 120 |
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},
|
| 121 |
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"reason": null,
|
| 122 |
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"status": "completed"
|
| 123 |
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}
|
| 124 |
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},
|
| 125 |
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"trident_version": "0.3.0",
|
| 126 |
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"updated_at": "2026-10-07T15:39:02+0200"
|
| 127 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3092__e367a49447db.json
ADDED
|
@@ -0,0 +1,127 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
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|
|
|
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|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
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"dimensions": [
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| 4 |
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38308,
|
| 5 |
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20600
|
| 6 |
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],
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| 7 |
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"level_count": 1,
|
| 8 |
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|
| 9 |
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"mpp": 0.5
|
| 10 |
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},
|
| 11 |
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| 12 |
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"last_status": "completed",
|
| 13 |
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|
| 14 |
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|
| 15 |
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},
|
| 16 |
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"schema_version": 2,
|
| 17 |
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"slide": {
|
| 18 |
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"abs_path": "/local/jobs/u25798_16540555/wsi-cache-16540555/gpu_0/batch_1/3092.tif",
|
| 19 |
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"ext": ".tif",
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| 20 |
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"id": "3092.tif__e367a49447db",
|
| 21 |
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"name": "3092",
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| 22 |
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"reader_type": "OpenSlideWSI",
|
| 23 |
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|
| 24 |
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},
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| 25 |
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| 26 |
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|
| 27 |
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| 28 |
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|
| 29 |
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},
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| 30 |
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|
| 31 |
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|
| 32 |
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"titan": "completed"
|
| 33 |
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}
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| 34 |
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},
|
| 35 |
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"tasks": {
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| 36 |
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| 37 |
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| 38 |
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| 39 |
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| 40 |
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"outputs": {
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| 41 |
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"coords_h5": {
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| 42 |
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"bytes": 32360,
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| 43 |
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|
| 44 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/3092_patches.h5"
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| 45 |
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}
|
| 46 |
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},
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| 47 |
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"reason": "already_generated",
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| 48 |
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| 49 |
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| 50 |
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| 51 |
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{
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| 54 |
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| 61 |
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|
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}
|
| 63 |
+
],
|
| 64 |
+
"message": "Patch features extracted.",
|
| 65 |
+
"outputs": {
|
| 66 |
+
"coords_path": {
|
| 67 |
+
"bytes": 32360,
|
| 68 |
+
"exists": true,
|
| 69 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/3092_patches.h5"
|
| 70 |
+
},
|
| 71 |
+
"features_path": {
|
| 72 |
+
"bytes": 1079432,
|
| 73 |
+
"exists": true,
|
| 74 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/3092.h5"
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"reason": null,
|
| 78 |
+
"status": "completed"
|
| 79 |
+
},
|
| 80 |
+
"segmentation": {
|
| 81 |
+
"_active_attempt_id": null,
|
| 82 |
+
"attempts": [],
|
| 83 |
+
"message": "Tissue already segmented; skipping.",
|
| 84 |
+
"outputs": {
|
| 85 |
+
"contour_jpg": {
|
| 86 |
+
"bytes": 185912,
|
| 87 |
+
"exists": true,
|
| 88 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3092.jpg"
|
| 89 |
+
}
|
| 90 |
+
},
|
| 91 |
+
"reason": "already_segmented",
|
| 92 |
+
"status": "skipped"
|
| 93 |
+
},
|
| 94 |
+
"slide_features:titan": {
|
| 95 |
+
"_active_attempt_id": null,
|
| 96 |
+
"attempts": [
|
| 97 |
+
{
|
| 98 |
+
"attempt_id": "f4014f34c0ed",
|
| 99 |
+
"duration_s": 0.18554329872131348,
|
| 100 |
+
"error": null,
|
| 101 |
+
"finished_at": "2026-10-07T18:53:44+0200",
|
| 102 |
+
"finished_epoch": 1791392024.509548,
|
| 103 |
+
"result": "completed",
|
| 104 |
+
"started_at": "2026-10-07T18:53:44+0200",
|
| 105 |
+
"started_epoch": 1791392024.3240047
|
| 106 |
+
}
|
| 107 |
+
],
|
| 108 |
+
"message": "Slide features extracted.",
|
| 109 |
+
"outputs": {
|
| 110 |
+
"patch_features_path": {
|
| 111 |
+
"bytes": 1079432,
|
| 112 |
+
"exists": true,
|
| 113 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/3092.h5"
|
| 114 |
+
},
|
| 115 |
+
"slide_features_path": {
|
| 116 |
+
"bytes": 65728,
|
| 117 |
+
"exists": true,
|
| 118 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/slide_features_titan/3092.h5"
|
| 119 |
+
}
|
| 120 |
+
},
|
| 121 |
+
"reason": null,
|
| 122 |
+
"status": "completed"
|
| 123 |
+
}
|
| 124 |
+
},
|
| 125 |
+
"trident_version": "0.3.0",
|
| 126 |
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"updated_at": "2026-10-07T18:53:44+0200"
|
| 127 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30986__1fbe3e6333d1.json
ADDED
|
@@ -0,0 +1,88 @@
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|
|
|
|
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|
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|
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|
|
|
|
|
|
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|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
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|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"mpp": 0.5
|
| 4 |
+
},
|
| 5 |
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"resume": {
|
| 6 |
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"last_status": "completed",
|
| 7 |
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"last_task": "patch_features:keep",
|
| 8 |
+
"last_updated_at": "2026-10-07T17:37:06+0200"
|
| 9 |
+
},
|
| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540613/wsi-cache-16540613/gpu_0/batch_16/30986.tif",
|
| 13 |
+
"ext": ".tif",
|
| 14 |
+
"id": "30986.tif__1fbe3e6333d1",
|
| 15 |
+
"name": "30986",
|
| 16 |
+
"reader_type": "OpenSlideWSI",
|
| 17 |
+
"rel_path": null
|
| 18 |
+
},
|
| 19 |
+
"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
+
"patch_features": {
|
| 22 |
+
"keep": "completed"
|
| 23 |
+
},
|
| 24 |
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"segmentation": "skipped (already_segmented)"
|
| 25 |
+
},
|
| 26 |
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"tasks": {
|
| 27 |
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"coords": {
|
| 28 |
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"_active_attempt_id": null,
|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
+
"outputs": {
|
| 32 |
+
"coords_h5": {
|
| 33 |
+
"bytes": 46920,
|
| 34 |
+
"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/30986_patches.h5"
|
| 36 |
+
}
|
| 37 |
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},
|
| 38 |
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"reason": "already_generated",
|
| 39 |
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"status": "skipped"
|
| 40 |
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},
|
| 41 |
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"patch_features:keep": {
|
| 42 |
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"_active_attempt_id": null,
|
| 43 |
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"attempts": [
|
| 44 |
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{
|
| 45 |
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"attempt_id": "d77cc9e0ee41",
|
| 46 |
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"duration_s": 34.57877516746521,
|
| 47 |
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"error": null,
|
| 48 |
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"finished_at": "2026-10-07T17:37:06+0200",
|
| 49 |
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"finished_epoch": 1791387426.815156,
|
| 50 |
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"result": "completed",
|
| 51 |
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"started_at": "2026-10-07T17:36:32+0200",
|
| 52 |
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"started_epoch": 1791387392.2363808
|
| 53 |
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}
|
| 54 |
+
],
|
| 55 |
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"message": "Patch features extracted.",
|
| 56 |
+
"outputs": {
|
| 57 |
+
"coords_path": {
|
| 58 |
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"bytes": 46920,
|
| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/30986_patches.h5"
|
| 61 |
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},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 1755720,
|
| 64 |
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"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/features_keep/30986.h5"
|
| 66 |
+
}
|
| 67 |
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},
|
| 68 |
+
"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
+
},
|
| 71 |
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"segmentation": {
|
| 72 |
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"_active_attempt_id": null,
|
| 73 |
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"attempts": [],
|
| 74 |
+
"message": "Tissue already segmented; skipping.",
|
| 75 |
+
"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
+
"bytes": 255630,
|
| 78 |
+
"exists": true,
|
| 79 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30986.jpg"
|
| 80 |
+
}
|
| 81 |
+
},
|
| 82 |
+
"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T17:37:06+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30986__459b810e2b1e.json
ADDED
|
@@ -0,0 +1,422 @@
|
|
|
|
|
|
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|
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|
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|
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| 340 |
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| 341 |
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}
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| 342 |
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],
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| 343 |
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| 344 |
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| 345 |
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| 346 |
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| 347 |
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| 348 |
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| 349 |
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| 350 |
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| 351 |
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| 352 |
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| 353 |
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| 354 |
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| 355 |
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| 356 |
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| 357 |
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| 358 |
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| 359 |
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| 360 |
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| 362 |
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| 364 |
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| 367 |
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| 369 |
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| 370 |
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| 371 |
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| 372 |
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| 374 |
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| 377 |
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| 378 |
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| 380 |
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| 381 |
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| 382 |
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{
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| 383 |
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| 384 |
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| 385 |
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| 386 |
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| 387 |
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| 388 |
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| 389 |
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| 390 |
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| 391 |
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|
| 392 |
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{
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| 393 |
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| 394 |
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| 395 |
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|
| 396 |
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|
| 397 |
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|
| 398 |
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|
| 399 |
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| 400 |
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| 401 |
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}
|
| 402 |
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],
|
| 403 |
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"message": "Slide features extracted.",
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| 404 |
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"outputs": {
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| 405 |
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| 406 |
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"bytes": 415599624,
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| 407 |
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|
| 408 |
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| 409 |
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},
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| 410 |
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| 411 |
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| 412 |
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"exists": true,
|
| 413 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_224px_0px_overlap/slide_features_prism/30986.h5"
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| 414 |
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| 415 |
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|
| 416 |
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"reason": null,
|
| 417 |
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"status": "completed"
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| 418 |
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| 419 |
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| 422 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30986__4e9e418fb6ec.json
ADDED
|
@@ -0,0 +1,88 @@
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|
|
|
|
|
|
|
|
|
|
|
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|
| 1 |
+
{
|
| 2 |
+
"meta": {
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| 3 |
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"mpp": 0.5
|
| 4 |
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},
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| 5 |
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| 6 |
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| 7 |
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|
| 8 |
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|
| 9 |
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},
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| 10 |
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|
| 11 |
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| 12 |
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| 13 |
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"ext": ".tif",
|
| 14 |
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"id": "30986.tif__4e9e418fb6ec",
|
| 15 |
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"name": "30986",
|
| 16 |
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|
| 17 |
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|
| 18 |
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},
|
| 19 |
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| 20 |
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|
| 21 |
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|
| 22 |
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"keep": "completed"
|
| 23 |
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},
|
| 24 |
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"segmentation": "skipped (already_segmented)"
|
| 25 |
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},
|
| 26 |
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"tasks": {
|
| 27 |
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|
| 28 |
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"_active_attempt_id": null,
|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
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"outputs": {
|
| 32 |
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"coords_h5": {
|
| 33 |
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"bytes": 137496,
|
| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/30986_patches.h5"
|
| 36 |
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}
|
| 37 |
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},
|
| 38 |
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"reason": "already_generated",
|
| 39 |
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|
| 40 |
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},
|
| 41 |
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"patch_features:keep": {
|
| 42 |
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|
| 43 |
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"attempts": [
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| 44 |
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{
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| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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"started_epoch": 1791383315.3978217
|
| 53 |
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}
|
| 54 |
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],
|
| 55 |
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"message": "Patch features extracted.",
|
| 56 |
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"outputs": {
|
| 57 |
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|
| 58 |
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| 59 |
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"exists": true,
|
| 60 |
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|
| 61 |
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| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_keep/30986.h5"
|
| 66 |
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}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
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},
|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30986.jpg"
|
| 80 |
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}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
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| 83 |
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|
| 84 |
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| 85 |
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},
|
| 86 |
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|
| 87 |
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|
| 88 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30986__727299cf7454.json
ADDED
|
@@ -0,0 +1,88 @@
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| 1 |
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{
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| 5 |
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| 8 |
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|
| 9 |
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},
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| 10 |
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|
| 11 |
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| 12 |
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|
| 13 |
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"ext": ".tif",
|
| 14 |
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"id": "30986.tif__727299cf7454",
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| 15 |
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"name": "30986",
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| 16 |
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|
| 17 |
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|
| 18 |
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},
|
| 19 |
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| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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| 24 |
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|
| 25 |
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| 26 |
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| 27 |
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| 28 |
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|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
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"outputs": {
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| 32 |
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|
| 33 |
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"bytes": 20784,
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| 34 |
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"exists": true,
|
| 35 |
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| 36 |
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}
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| 37 |
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},
|
| 38 |
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"reason": "already_generated",
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| 39 |
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| 40 |
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| 41 |
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| 42 |
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| 43 |
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| 46 |
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| 50 |
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| 52 |
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}
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],
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| 55 |
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| 56 |
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| 57 |
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| 58 |
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| 59 |
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| 60 |
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| 61 |
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| 62 |
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| 63 |
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|
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| 66 |
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}
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| 68 |
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| 69 |
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"status": "completed"
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},
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| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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| 75 |
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"outputs": {
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| 76 |
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| 77 |
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"bytes": 255630,
|
| 78 |
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"exists": true,
|
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30986.jpg"
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| 80 |
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}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
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| 83 |
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"status": "skipped"
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| 84 |
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}
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T23:48:28+0200"
|
| 88 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30986__785188a8958a.json
ADDED
|
@@ -0,0 +1,88 @@
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|
|
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|
|
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|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"mpp": 0.5
|
| 4 |
+
},
|
| 5 |
+
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|
| 6 |
+
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|
| 7 |
+
"last_task": "patch_features:keep",
|
| 8 |
+
"last_updated_at": "2026-10-07T23:08:24+0200"
|
| 9 |
+
},
|
| 10 |
+
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|
| 11 |
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"slide": {
|
| 12 |
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|
| 13 |
+
"ext": ".tif",
|
| 14 |
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"id": "30986.tif__785188a8958a",
|
| 15 |
+
"name": "30986",
|
| 16 |
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"reader_type": "OpenSlideWSI",
|
| 17 |
+
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|
| 18 |
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},
|
| 19 |
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"summary": {
|
| 20 |
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|
| 21 |
+
"patch_features": {
|
| 22 |
+
"keep": "completed"
|
| 23 |
+
},
|
| 24 |
+
"segmentation": "skipped (already_segmented)"
|
| 25 |
+
},
|
| 26 |
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"tasks": {
|
| 27 |
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|
| 28 |
+
"_active_attempt_id": null,
|
| 29 |
+
"attempts": [],
|
| 30 |
+
"message": "Patch coords already generated; skipping.",
|
| 31 |
+
"outputs": {
|
| 32 |
+
"coords_h5": {
|
| 33 |
+
"bytes": 1945144,
|
| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/30986_patches.h5"
|
| 36 |
+
}
|
| 37 |
+
},
|
| 38 |
+
"reason": "already_generated",
|
| 39 |
+
"status": "skipped"
|
| 40 |
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},
|
| 41 |
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|
| 42 |
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|
| 43 |
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"attempts": [
|
| 44 |
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{
|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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"started_at": "2026-10-07T23:06:30+0200",
|
| 52 |
+
"started_epoch": 1791407190.442653
|
| 53 |
+
}
|
| 54 |
+
],
|
| 55 |
+
"message": "Patch features extracted.",
|
| 56 |
+
"outputs": {
|
| 57 |
+
"coords_path": {
|
| 58 |
+
"bytes": 1945144,
|
| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/30986_patches.h5"
|
| 61 |
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},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 98065144,
|
| 64 |
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"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/features_keep/30986.h5"
|
| 66 |
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}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
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},
|
| 71 |
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"segmentation": {
|
| 72 |
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"_active_attempt_id": null,
|
| 73 |
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"attempts": [],
|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
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"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
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"bytes": 255630,
|
| 78 |
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"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30986.jpg"
|
| 80 |
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}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T23:08:24+0200"
|
| 88 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30986__84d64e12e665.json
ADDED
|
@@ -0,0 +1,88 @@
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|
|
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|
|
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|
|
|
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|
|
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|
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|
|
|
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|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
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|
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|
|
|
|
|
|
|
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|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
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"mpp": 0.5
|
| 4 |
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},
|
| 5 |
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| 6 |
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|
| 7 |
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"last_task": "patch_features:conch_v1",
|
| 8 |
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"last_updated_at": "2026-10-07T18:27:05+0200"
|
| 9 |
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},
|
| 10 |
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|
| 11 |
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"slide": {
|
| 12 |
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|
| 13 |
+
"ext": ".tif",
|
| 14 |
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"id": "30986.tif__84d64e12e665",
|
| 15 |
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"name": "30986",
|
| 16 |
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|
| 17 |
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|
| 18 |
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},
|
| 19 |
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| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
+
},
|
| 24 |
+
"segmentation": "skipped (already_segmented)"
|
| 25 |
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},
|
| 26 |
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"tasks": {
|
| 27 |
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"coords": {
|
| 28 |
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"_active_attempt_id": null,
|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
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"outputs": {
|
| 32 |
+
"coords_h5": {
|
| 33 |
+
"bytes": 46920,
|
| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_1024px_0px_overlap/patches/30986_patches.h5"
|
| 36 |
+
}
|
| 37 |
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},
|
| 38 |
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"reason": "already_generated",
|
| 39 |
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"status": "skipped"
|
| 40 |
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},
|
| 41 |
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"patch_features:conch_v1": {
|
| 42 |
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|
| 43 |
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"attempts": [
|
| 44 |
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{
|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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}
|
| 54 |
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],
|
| 55 |
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"message": "Patch features extracted.",
|
| 56 |
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"outputs": {
|
| 57 |
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"coords_path": {
|
| 58 |
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"bytes": 46920,
|
| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_1024px_0px_overlap/patches/30986_patches.h5"
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| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_1024px_0px_overlap/features_conch_v1/30986.h5"
|
| 66 |
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}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
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},
|
| 71 |
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"segmentation": {
|
| 72 |
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"_active_attempt_id": null,
|
| 73 |
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"attempts": [],
|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
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"outputs": {
|
| 76 |
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|
| 77 |
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"bytes": 255630,
|
| 78 |
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"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30986.jpg"
|
| 80 |
+
}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T18:27:05+0200"
|
| 88 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30986__878e25706dcc.json
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
|
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|
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|
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|
|
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|
|
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|
|
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|
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|
|
|
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|
|
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|
|
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|
|
|
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|
|
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|
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|
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|
|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
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|
| 4 |
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|
| 5 |
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"resume": {
|
| 6 |
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"last_status": "completed",
|
| 7 |
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"last_task": "patch_features:conch_v1",
|
| 8 |
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|
| 9 |
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},
|
| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540700/wsi-cache-16540700/gpu_0/batch_16/30986.tif",
|
| 13 |
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"ext": ".tif",
|
| 14 |
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"id": "30986.tif__878e25706dcc",
|
| 15 |
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"name": "30986",
|
| 16 |
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"reader_type": "OpenSlideWSI",
|
| 17 |
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"rel_path": null
|
| 18 |
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},
|
| 19 |
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"summary": {
|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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},
|
| 24 |
+
"segmentation": "skipped (already_segmented)"
|
| 25 |
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},
|
| 26 |
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"tasks": {
|
| 27 |
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"coords": {
|
| 28 |
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"_active_attempt_id": null,
|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
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"outputs": {
|
| 32 |
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"coords_h5": {
|
| 33 |
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"bytes": 20784,
|
| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/30986_patches.h5"
|
| 36 |
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}
|
| 37 |
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},
|
| 38 |
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"reason": "already_generated",
|
| 39 |
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"status": "skipped"
|
| 40 |
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},
|
| 41 |
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"patch_features:conch_v1": {
|
| 42 |
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"_active_attempt_id": null,
|
| 43 |
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"attempts": [
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| 44 |
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{
|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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| 49 |
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"finished_epoch": 1791391157.7936997,
|
| 50 |
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"result": "completed",
|
| 51 |
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"started_at": "2026-10-07T18:38:39+0200",
|
| 52 |
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"started_epoch": 1791391119.8375652
|
| 53 |
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}
|
| 54 |
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],
|
| 55 |
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"message": "Patch features extracted.",
|
| 56 |
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"outputs": {
|
| 57 |
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"coords_path": {
|
| 58 |
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"bytes": 20784,
|
| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/30986_patches.h5"
|
| 61 |
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},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 340136,
|
| 64 |
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|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/features_conch_v1/30986.h5"
|
| 66 |
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}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
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},
|
| 71 |
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"segmentation": {
|
| 72 |
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"_active_attempt_id": null,
|
| 73 |
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"attempts": [],
|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
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"outputs": {
|
| 76 |
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|
| 77 |
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"bytes": 255630,
|
| 78 |
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"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30986.jpg"
|
| 80 |
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}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
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}
|
| 85 |
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},
|
| 86 |
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"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T18:39:17+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30986__93e2c0be7cda.json
ADDED
|
@@ -0,0 +1,127 @@
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|
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|
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|
|
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|
|
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|
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|
|
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|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
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|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
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|
|
|
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|
|
|
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|
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|
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|
|
|
|
|
|
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|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"dimensions": [
|
| 4 |
+
66911,
|
| 5 |
+
49395
|
| 6 |
+
],
|
| 7 |
+
"level_count": 1,
|
| 8 |
+
"mag": 20,
|
| 9 |
+
"mpp": 0.5
|
| 10 |
+
},
|
| 11 |
+
"resume": {
|
| 12 |
+
"last_status": "completed",
|
| 13 |
+
"last_task": "slide_features:titan",
|
| 14 |
+
"last_updated_at": "2026-10-07T17:13:26+0200"
|
| 15 |
+
},
|
| 16 |
+
"schema_version": 2,
|
| 17 |
+
"slide": {
|
| 18 |
+
"abs_path": "/local/jobs/u25798_16540552/wsi-cache-16540552/gpu_0/batch_16/30986.tif",
|
| 19 |
+
"ext": ".tif",
|
| 20 |
+
"id": "30986.tif__93e2c0be7cda",
|
| 21 |
+
"name": "30986",
|
| 22 |
+
"reader_type": "OpenSlideWSI",
|
| 23 |
+
"rel_path": null
|
| 24 |
+
},
|
| 25 |
+
"summary": {
|
| 26 |
+
"coords": "skipped (already_generated)",
|
| 27 |
+
"patch_features": {
|
| 28 |
+
"conch_v15": "completed"
|
| 29 |
+
},
|
| 30 |
+
"segmentation": "skipped (already_segmented)",
|
| 31 |
+
"slide_features": {
|
| 32 |
+
"titan": "completed"
|
| 33 |
+
}
|
| 34 |
+
},
|
| 35 |
+
"tasks": {
|
| 36 |
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"coords": {
|
| 37 |
+
"_active_attempt_id": null,
|
| 38 |
+
"attempts": [],
|
| 39 |
+
"message": "Patch coords already generated; skipping.",
|
| 40 |
+
"outputs": {
|
| 41 |
+
"coords_h5": {
|
| 42 |
+
"bytes": 137496,
|
| 43 |
+
"exists": true,
|
| 44 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/30986_patches.h5"
|
| 45 |
+
}
|
| 46 |
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},
|
| 47 |
+
"reason": "already_generated",
|
| 48 |
+
"status": "skipped"
|
| 49 |
+
},
|
| 50 |
+
"patch_features:conch_v15": {
|
| 51 |
+
"_active_attempt_id": null,
|
| 52 |
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"attempts": [
|
| 53 |
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{
|
| 54 |
+
"attempt_id": "12368cba80a0",
|
| 55 |
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"duration_s": 47.37244176864624,
|
| 56 |
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"error": null,
|
| 57 |
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"finished_at": "2026-10-07T17:09:00+0200",
|
| 58 |
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"finished_epoch": 1791385740.3577485,
|
| 59 |
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"result": "completed",
|
| 60 |
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"started_at": "2026-10-07T17:08:12+0200",
|
| 61 |
+
"started_epoch": 1791385692.9853067
|
| 62 |
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}
|
| 63 |
+
],
|
| 64 |
+
"message": "Patch features extracted.",
|
| 65 |
+
"outputs": {
|
| 66 |
+
"coords_path": {
|
| 67 |
+
"bytes": 137496,
|
| 68 |
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"exists": true,
|
| 69 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/30986_patches.h5"
|
| 70 |
+
},
|
| 71 |
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"features_path": {
|
| 72 |
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"bytes": 6531528,
|
| 73 |
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"exists": true,
|
| 74 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/30986.h5"
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
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"reason": null,
|
| 78 |
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"status": "completed"
|
| 79 |
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},
|
| 80 |
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"segmentation": {
|
| 81 |
+
"_active_attempt_id": null,
|
| 82 |
+
"attempts": [],
|
| 83 |
+
"message": "Tissue already segmented; skipping.",
|
| 84 |
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"outputs": {
|
| 85 |
+
"contour_jpg": {
|
| 86 |
+
"bytes": 255630,
|
| 87 |
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"exists": true,
|
| 88 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30986.jpg"
|
| 89 |
+
}
|
| 90 |
+
},
|
| 91 |
+
"reason": "already_segmented",
|
| 92 |
+
"status": "skipped"
|
| 93 |
+
},
|
| 94 |
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"slide_features:titan": {
|
| 95 |
+
"_active_attempt_id": null,
|
| 96 |
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"attempts": [
|
| 97 |
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{
|
| 98 |
+
"attempt_id": "a536ba1c9a44",
|
| 99 |
+
"duration_s": 1.1638102531433105,
|
| 100 |
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"error": null,
|
| 101 |
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"finished_at": "2026-10-07T17:13:26+0200",
|
| 102 |
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"finished_epoch": 1791386006.691603,
|
| 103 |
+
"result": "completed",
|
| 104 |
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"started_at": "2026-10-07T17:13:25+0200",
|
| 105 |
+
"started_epoch": 1791386005.5277927
|
| 106 |
+
}
|
| 107 |
+
],
|
| 108 |
+
"message": "Slide features extracted.",
|
| 109 |
+
"outputs": {
|
| 110 |
+
"patch_features_path": {
|
| 111 |
+
"bytes": 6531528,
|
| 112 |
+
"exists": true,
|
| 113 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/30986.h5"
|
| 114 |
+
},
|
| 115 |
+
"slide_features_path": {
|
| 116 |
+
"bytes": 172640,
|
| 117 |
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"exists": true,
|
| 118 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/slide_features_titan/30986.h5"
|
| 119 |
+
}
|
| 120 |
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},
|
| 121 |
+
"reason": null,
|
| 122 |
+
"status": "completed"
|
| 123 |
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}
|
| 124 |
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},
|
| 125 |
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"trident_version": "0.3.0",
|
| 126 |
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"updated_at": "2026-10-07T17:13:26+0200"
|
| 127 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30986__cd41f8fe8244.json
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
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|
|
|
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|
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|
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|
|
|
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|
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|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"mpp": 0.5
|
| 4 |
+
},
|
| 5 |
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"resume": {
|
| 6 |
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"last_status": "completed",
|
| 7 |
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"last_task": "patch_features:keep",
|
| 8 |
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"last_updated_at": "2026-10-07T16:31:18+0200"
|
| 9 |
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},
|
| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540466/wsi-cache-16540466/gpu_0/batch_16/30986.tif",
|
| 13 |
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"ext": ".tif",
|
| 14 |
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"id": "30986.tif__cd41f8fe8244",
|
| 15 |
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"name": "30986",
|
| 16 |
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"reader_type": "OpenSlideWSI",
|
| 17 |
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"rel_path": null
|
| 18 |
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},
|
| 19 |
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"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
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"patch_features": {
|
| 22 |
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"keep": "completed"
|
| 23 |
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},
|
| 24 |
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"segmentation": "skipped (already_segmented)"
|
| 25 |
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},
|
| 26 |
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"tasks": {
|
| 27 |
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"coords": {
|
| 28 |
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"_active_attempt_id": null,
|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
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"outputs": {
|
| 32 |
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"coords_h5": {
|
| 33 |
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"bytes": 1945144,
|
| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/30986_patches.h5"
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| 36 |
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}
|
| 37 |
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},
|
| 38 |
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"reason": "already_generated",
|
| 39 |
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"status": "skipped"
|
| 40 |
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},
|
| 41 |
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"patch_features:keep": {
|
| 42 |
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|
| 43 |
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"attempts": [
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| 44 |
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{
|
| 45 |
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"attempt_id": "a7961d1ca757",
|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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"started_at": "2026-10-07T16:29:24+0200",
|
| 52 |
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"started_epoch": 1791383364.1059873
|
| 53 |
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}
|
| 54 |
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],
|
| 55 |
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"message": "Patch features extracted.",
|
| 56 |
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"outputs": {
|
| 57 |
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"coords_path": {
|
| 58 |
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"bytes": 1945144,
|
| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/patches/30986_patches.h5"
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| 61 |
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},
|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 98065144,
|
| 64 |
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"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_256px_0px_overlap/features_keep/30986.h5"
|
| 66 |
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}
|
| 67 |
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},
|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
| 70 |
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},
|
| 71 |
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"segmentation": {
|
| 72 |
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"_active_attempt_id": null,
|
| 73 |
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"attempts": [],
|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
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"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
+
"bytes": 255630,
|
| 78 |
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"exists": true,
|
| 79 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30986.jpg"
|
| 80 |
+
}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
+
"status": "skipped"
|
| 84 |
+
}
|
| 85 |
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},
|
| 86 |
+
"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T16:31:18+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30986__d29ac594367b.json
ADDED
|
@@ -0,0 +1,127 @@
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
|
|
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|
|
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|
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|
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|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
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"dimensions": [
|
| 4 |
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66911,
|
| 5 |
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49395
|
| 6 |
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],
|
| 7 |
+
"level_count": 1,
|
| 8 |
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"mag": 20,
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| 9 |
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| 10 |
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| 11 |
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| 12 |
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| 14 |
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|
| 15 |
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| 16 |
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| 17 |
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| 18 |
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| 19 |
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"ext": ".tif",
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| 20 |
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"id": "30986.tif__d29ac594367b",
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| 21 |
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| 22 |
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| 23 |
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| 24 |
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| 25 |
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| 27 |
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| 28 |
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| 29 |
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| 30 |
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| 31 |
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| 32 |
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|
| 33 |
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| 34 |
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| 35 |
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| 36 |
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| 37 |
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|
| 38 |
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|
| 39 |
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| 40 |
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| 41 |
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| 42 |
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| 43 |
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| 44 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/30986_patches.h5"
|
| 45 |
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}
|
| 46 |
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},
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| 47 |
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| 48 |
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"status": "skipped"
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| 49 |
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| 50 |
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| 51 |
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| 52 |
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| 53 |
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| 55 |
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| 59 |
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| 61 |
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| 62 |
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|
| 63 |
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| 64 |
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| 65 |
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| 66 |
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| 67 |
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| 68 |
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|
| 69 |
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| 70 |
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| 71 |
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| 72 |
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| 73 |
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| 75 |
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| 76 |
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| 77 |
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|
| 78 |
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| 79 |
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| 80 |
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| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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| 85 |
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| 86 |
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|
| 87 |
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| 88 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30986.jpg"
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| 89 |
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}
|
| 90 |
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},
|
| 91 |
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"reason": "already_segmented",
|
| 92 |
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|
| 93 |
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},
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| 94 |
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| 95 |
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|
| 96 |
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| 97 |
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|
| 98 |
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|
| 99 |
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|
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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"started_epoch": 1791383736.3877969
|
| 106 |
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}
|
| 107 |
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],
|
| 108 |
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"message": "Slide features extracted.",
|
| 109 |
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"outputs": {
|
| 110 |
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"patch_features_path": {
|
| 111 |
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"bytes": 1755720,
|
| 112 |
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"exists": true,
|
| 113 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/features_conch_v15/30986.h5"
|
| 114 |
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},
|
| 115 |
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"slide_features_path": {
|
| 116 |
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"bytes": 80048,
|
| 117 |
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"exists": true,
|
| 118 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/slide_features_titan/30986.h5"
|
| 119 |
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}
|
| 120 |
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},
|
| 121 |
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"reason": null,
|
| 122 |
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"status": "completed"
|
| 123 |
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}
|
| 124 |
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|
| 125 |
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|
| 126 |
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"updated_at": "2026-10-07T16:35:36+0200"
|
| 127 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30986__e0fc3e9c396b.json
ADDED
|
@@ -0,0 +1,127 @@
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|
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|
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|
|
|
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|
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|
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|
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|
|
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|
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|
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|
|
|
|
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|
|
|
|
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|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
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|
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|
| 1 |
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{
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| 2 |
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| 3 |
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| 4 |
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| 5 |
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],
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| 8 |
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| 9 |
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| 10 |
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| 11 |
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| 13 |
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| 14 |
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|
| 15 |
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|
| 16 |
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|
| 17 |
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|
| 18 |
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|
| 19 |
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"ext": ".tif",
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| 20 |
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"id": "30986.tif__e0fc3e9c396b",
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| 21 |
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| 22 |
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| 23 |
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| 24 |
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| 25 |
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| 26 |
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| 27 |
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| 28 |
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| 29 |
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| 30 |
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| 31 |
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| 32 |
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| 33 |
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| 34 |
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| 35 |
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| 36 |
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| 37 |
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| 38 |
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| 39 |
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| 40 |
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| 41 |
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| 42 |
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| 47 |
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| 48 |
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| 61 |
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| 62 |
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}
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| 63 |
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],
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| 64 |
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"message": "Patch features extracted.",
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| 65 |
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| 66 |
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| 67 |
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| 68 |
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| 69 |
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| 70 |
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| 71 |
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| 72 |
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| 73 |
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| 75 |
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}
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| 76 |
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| 77 |
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| 78 |
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| 82 |
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| 83 |
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| 84 |
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| 85 |
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| 86 |
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| 87 |
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| 89 |
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| 90 |
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| 105 |
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| 106 |
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}
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| 107 |
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],
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| 108 |
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"message": "Slide features extracted.",
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| 109 |
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"outputs": {
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| 110 |
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| 111 |
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| 112 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/slide_features_titan/30986.h5"
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| 119 |
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}
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| 120 |
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| 121 |
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| 122 |
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| 127 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30986__e83b4ae846ea.json
ADDED
|
@@ -0,0 +1,88 @@
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|
| 1 |
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{
|
| 2 |
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| 3 |
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| 5 |
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| 9 |
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| 10 |
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| 13 |
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"ext": ".tif",
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"id": "30986.tif__e83b4ae846ea",
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| 15 |
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"name": "30986",
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| 19 |
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|
| 22 |
+
"conch_v1": "completed"
|
| 23 |
+
},
|
| 24 |
+
"segmentation": "skipped (already_segmented)"
|
| 25 |
+
},
|
| 26 |
+
"tasks": {
|
| 27 |
+
"coords": {
|
| 28 |
+
"_active_attempt_id": null,
|
| 29 |
+
"attempts": [],
|
| 30 |
+
"message": "Patch coords already generated; skipping.",
|
| 31 |
+
"outputs": {
|
| 32 |
+
"coords_h5": {
|
| 33 |
+
"bytes": 508968,
|
| 34 |
+
"exists": true,
|
| 35 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_256px_0px_overlap/patches/30986_patches.h5"
|
| 36 |
+
}
|
| 37 |
+
},
|
| 38 |
+
"reason": "already_generated",
|
| 39 |
+
"status": "skipped"
|
| 40 |
+
},
|
| 41 |
+
"patch_features:conch_v1": {
|
| 42 |
+
"_active_attempt_id": null,
|
| 43 |
+
"attempts": [
|
| 44 |
+
{
|
| 45 |
+
"attempt_id": "fe47ca362060",
|
| 46 |
+
"duration_s": 290.50899386405945,
|
| 47 |
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"error": null,
|
| 48 |
+
"finished_at": "2026-10-08T01:40:25+0200",
|
| 49 |
+
"finished_epoch": 1791416425.4776928,
|
| 50 |
+
"result": "completed",
|
| 51 |
+
"started_at": "2026-10-08T01:35:34+0200",
|
| 52 |
+
"started_epoch": 1791416134.968699
|
| 53 |
+
}
|
| 54 |
+
],
|
| 55 |
+
"message": "Patch features extracted.",
|
| 56 |
+
"outputs": {
|
| 57 |
+
"coords_path": {
|
| 58 |
+
"bytes": 508968,
|
| 59 |
+
"exists": true,
|
| 60 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_256px_0px_overlap/patches/30986_patches.h5"
|
| 61 |
+
},
|
| 62 |
+
"features_path": {
|
| 63 |
+
"bytes": 17059848,
|
| 64 |
+
"exists": true,
|
| 65 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_256px_0px_overlap/features_conch_v1/30986.h5"
|
| 66 |
+
}
|
| 67 |
+
},
|
| 68 |
+
"reason": null,
|
| 69 |
+
"status": "completed"
|
| 70 |
+
},
|
| 71 |
+
"segmentation": {
|
| 72 |
+
"_active_attempt_id": null,
|
| 73 |
+
"attempts": [],
|
| 74 |
+
"message": "Tissue already segmented; skipping.",
|
| 75 |
+
"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
+
"bytes": 255630,
|
| 78 |
+
"exists": true,
|
| 79 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30986.jpg"
|
| 80 |
+
}
|
| 81 |
+
},
|
| 82 |
+
"reason": "already_segmented",
|
| 83 |
+
"status": "skipped"
|
| 84 |
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}
|
| 85 |
+
},
|
| 86 |
+
"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-08T01:40:25+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30986__eb0530a3ffb0.json
ADDED
|
@@ -0,0 +1,127 @@
|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"dimensions": [
|
| 4 |
+
66911,
|
| 5 |
+
49395
|
| 6 |
+
],
|
| 7 |
+
"level_count": 1,
|
| 8 |
+
"mag": 20,
|
| 9 |
+
"mpp": 0.5
|
| 10 |
+
},
|
| 11 |
+
"resume": {
|
| 12 |
+
"last_status": "completed",
|
| 13 |
+
"last_task": "slide_features:titan",
|
| 14 |
+
"last_updated_at": "2026-10-07T17:17:08+0200"
|
| 15 |
+
},
|
| 16 |
+
"schema_version": 2,
|
| 17 |
+
"slide": {
|
| 18 |
+
"abs_path": "/local/jobs/u25798_16540458/wsi-cache-16540458/gpu_0/batch_16/30986.tif",
|
| 19 |
+
"ext": ".tif",
|
| 20 |
+
"id": "30986.tif__eb0530a3ffb0",
|
| 21 |
+
"name": "30986",
|
| 22 |
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"reader_type": "OpenSlideWSI",
|
| 23 |
+
"rel_path": null
|
| 24 |
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},
|
| 25 |
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"summary": {
|
| 26 |
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"coords": "skipped (already_generated)",
|
| 27 |
+
"patch_features": {
|
| 28 |
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"conch_v15": "completed"
|
| 29 |
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},
|
| 30 |
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"segmentation": "skipped (already_segmented)",
|
| 31 |
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"slide_features": {
|
| 32 |
+
"titan": "completed"
|
| 33 |
+
}
|
| 34 |
+
},
|
| 35 |
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"tasks": {
|
| 36 |
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"coords": {
|
| 37 |
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"_active_attempt_id": null,
|
| 38 |
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"attempts": [],
|
| 39 |
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"message": "Patch coords already generated; skipping.",
|
| 40 |
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"outputs": {
|
| 41 |
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"coords_h5": {
|
| 42 |
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"bytes": 508968,
|
| 43 |
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"exists": true,
|
| 44 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/patches/30986_patches.h5"
|
| 45 |
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}
|
| 46 |
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},
|
| 47 |
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"reason": "already_generated",
|
| 48 |
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"status": "skipped"
|
| 49 |
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},
|
| 50 |
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"patch_features:conch_v15": {
|
| 51 |
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|
| 52 |
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"attempts": [
|
| 53 |
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{
|
| 54 |
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"attempt_id": "2114600bddef",
|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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"finished_epoch": 1791385911.7133362,
|
| 59 |
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"result": "completed",
|
| 60 |
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"started_at": "2026-10-07T17:09:59+0200",
|
| 61 |
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"started_epoch": 1791385799.069501
|
| 62 |
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}
|
| 63 |
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],
|
| 64 |
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"message": "Patch features extracted.",
|
| 65 |
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"outputs": {
|
| 66 |
+
"coords_path": {
|
| 67 |
+
"bytes": 508968,
|
| 68 |
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"exists": true,
|
| 69 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/patches/30986_patches.h5"
|
| 70 |
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},
|
| 71 |
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"features_path": {
|
| 72 |
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"bytes": 25105416,
|
| 73 |
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"exists": true,
|
| 74 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/features_conch_v15/30986.h5"
|
| 75 |
+
}
|
| 76 |
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},
|
| 77 |
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"reason": null,
|
| 78 |
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"status": "completed"
|
| 79 |
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},
|
| 80 |
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"segmentation": {
|
| 81 |
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"_active_attempt_id": null,
|
| 82 |
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"attempts": [],
|
| 83 |
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"message": "Tissue already segmented; skipping.",
|
| 84 |
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"outputs": {
|
| 85 |
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"contour_jpg": {
|
| 86 |
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"bytes": 255630,
|
| 87 |
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"exists": true,
|
| 88 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/30986.jpg"
|
| 89 |
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}
|
| 90 |
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},
|
| 91 |
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"reason": "already_segmented",
|
| 92 |
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"status": "skipped"
|
| 93 |
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},
|
| 94 |
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"slide_features:titan": {
|
| 95 |
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"_active_attempt_id": null,
|
| 96 |
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"attempts": [
|
| 97 |
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{
|
| 98 |
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"attempt_id": "9830044b05b5",
|
| 99 |
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"duration_s": 3.9886057376861572,
|
| 100 |
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|
| 101 |
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"finished_at": "2026-10-07T17:17:08+0200",
|
| 102 |
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"finished_epoch": 1791386228.0676568,
|
| 103 |
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"result": "completed",
|
| 104 |
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"started_at": "2026-10-07T17:17:04+0200",
|
| 105 |
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"started_epoch": 1791386224.079051
|
| 106 |
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}
|
| 107 |
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],
|
| 108 |
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"message": "Slide features extracted.",
|
| 109 |
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"outputs": {
|
| 110 |
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"patch_features_path": {
|
| 111 |
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"bytes": 25105416,
|
| 112 |
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"exists": true,
|
| 113 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/features_conch_v15/30986.h5"
|
| 114 |
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},
|
| 115 |
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"slide_features_path": {
|
| 116 |
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"bytes": 544144,
|
| 117 |
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"exists": true,
|
| 118 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_512px_0px_overlap/slide_features_titan/30986.h5"
|
| 119 |
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}
|
| 120 |
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},
|
| 121 |
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"reason": null,
|
| 122 |
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"status": "completed"
|
| 123 |
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}
|
| 124 |
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},
|
| 125 |
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"trident_version": "0.3.0",
|
| 126 |
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"updated_at": "2026-10-07T17:17:08+0200"
|
| 127 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/30986__ffaeabaccaa1.json
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
|
|
|
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|
| 1 |
+
{
|
| 2 |
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"meta": {
|
| 3 |
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"mpp": 0.5
|
| 4 |
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},
|
| 5 |
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"resume": {
|
| 6 |
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"last_status": "completed",
|
| 7 |
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|
| 8 |
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|
| 9 |
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},
|
| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540615/wsi-cache-16540615/gpu_0/batch_16/30986.tif",
|
| 13 |
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"ext": ".tif",
|
| 14 |
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"id": "30986.tif__ffaeabaccaa1",
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| 15 |
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"name": "30986",
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| 16 |
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"reader_type": "OpenSlideWSI",
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| 17 |
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|
| 18 |
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},
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| 19 |
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"summary": {
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| 20 |
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| 21 |
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| 22 |
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"keep": "completed"
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| 23 |
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},
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| 24 |
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|
| 25 |
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| 26 |
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"tasks": {
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| 27 |
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| 28 |
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|
| 29 |
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|
| 30 |
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"message": "Patch coords already generated; skipping.",
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| 31 |
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"outputs": {
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| 32 |
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"coords_h5": {
|
| 33 |
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"bytes": 46920,
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| 34 |
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"exists": true,
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| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/30986_patches.h5"
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| 36 |
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}
|
| 37 |
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},
|
| 38 |
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| 39 |
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| 40 |
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| 41 |
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| 42 |
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| 43 |
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| 44 |
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{
|
| 45 |
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| 46 |
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| 50 |
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| 52 |
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| 53 |
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}
|
| 54 |
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],
|
| 55 |
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"message": "Patch features extracted.",
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| 56 |
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"outputs": {
|
| 57 |
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"coords_path": {
|
| 58 |
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"bytes": 46920,
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| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/30986_patches.h5"
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| 61 |
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| 62 |
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|
| 63 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/features_keep/30986.h5"
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| 66 |
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}
|
| 67 |
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|
| 68 |
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"reason": null,
|
| 69 |
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|
| 70 |
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},
|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
Run-Information/prep/UBC-OCEAN/wsi_states/3098__343fc9e97fcf.json
ADDED
|
@@ -0,0 +1,442 @@
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| 1 |
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Run-Information/prep/UBC-OCEAN/wsi_states/3098__37499651bc0f.json
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@@ -0,0 +1,88 @@
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| 1 |
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{
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| 34 |
+
"exists": true,
|
| 35 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/3098_patches.h5"
|
| 36 |
+
}
|
| 37 |
+
},
|
| 38 |
+
"reason": "already_generated",
|
| 39 |
+
"status": "skipped"
|
| 40 |
+
},
|
| 41 |
+
"patch_features:conch_v1": {
|
| 42 |
+
"_active_attempt_id": null,
|
| 43 |
+
"attempts": [
|
| 44 |
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{
|
| 45 |
+
"attempt_id": "3249d6147bfe",
|
| 46 |
+
"duration_s": 21.986897230148315,
|
| 47 |
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|
| 48 |
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"finished_at": "2026-10-07T17:12:08+0200",
|
| 49 |
+
"finished_epoch": 1791385928.5047412,
|
| 50 |
+
"result": "completed",
|
| 51 |
+
"started_at": "2026-10-07T17:11:46+0200",
|
| 52 |
+
"started_epoch": 1791385906.517844
|
| 53 |
+
}
|
| 54 |
+
],
|
| 55 |
+
"message": "Patch features extracted.",
|
| 56 |
+
"outputs": {
|
| 57 |
+
"coords_path": {
|
| 58 |
+
"bytes": 17800,
|
| 59 |
+
"exists": true,
|
| 60 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/3098_patches.h5"
|
| 61 |
+
},
|
| 62 |
+
"features_path": {
|
| 63 |
+
"bytes": 185032,
|
| 64 |
+
"exists": true,
|
| 65 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/features_conch_v1/3098.h5"
|
| 66 |
+
}
|
| 67 |
+
},
|
| 68 |
+
"reason": null,
|
| 69 |
+
"status": "completed"
|
| 70 |
+
},
|
| 71 |
+
"segmentation": {
|
| 72 |
+
"_active_attempt_id": null,
|
| 73 |
+
"attempts": [],
|
| 74 |
+
"message": "Tissue already segmented; skipping.",
|
| 75 |
+
"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
+
"bytes": 129591,
|
| 78 |
+
"exists": true,
|
| 79 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3098.jpg"
|
| 80 |
+
}
|
| 81 |
+
},
|
| 82 |
+
"reason": "already_segmented",
|
| 83 |
+
"status": "skipped"
|
| 84 |
+
}
|
| 85 |
+
},
|
| 86 |
+
"trident_version": "0.3.0",
|
| 87 |
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"updated_at": "2026-10-07T17:12:08+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3098__38c1c86180e8.json
ADDED
|
@@ -0,0 +1,127 @@
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|
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|
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|
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|
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|
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|
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|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
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|
|
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|
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|
|
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|
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|
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|
|
|
|
|
|
|
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|
|
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|
|
|
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|
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|
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|
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|
|
|
|
|
|
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|
|
|
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|
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|
|
|
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|
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|
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|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
|
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|
|
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|
|
|
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|
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|
|
|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"dimensions": [
|
| 4 |
+
68160,
|
| 5 |
+
26751
|
| 6 |
+
],
|
| 7 |
+
"level_count": 1,
|
| 8 |
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"mag": 20,
|
| 9 |
+
"mpp": 0.5
|
| 10 |
+
},
|
| 11 |
+
"resume": {
|
| 12 |
+
"last_status": "completed",
|
| 13 |
+
"last_task": "slide_features:titan",
|
| 14 |
+
"last_updated_at": "2026-10-07T18:53:44+0200"
|
| 15 |
+
},
|
| 16 |
+
"schema_version": 2,
|
| 17 |
+
"slide": {
|
| 18 |
+
"abs_path": "/local/jobs/u25798_16540555/wsi-cache-16540555/gpu_0/batch_1/3098.tif",
|
| 19 |
+
"ext": ".tif",
|
| 20 |
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"id": "3098.tif__38c1c86180e8",
|
| 21 |
+
"name": "3098",
|
| 22 |
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"reader_type": "OpenSlideWSI",
|
| 23 |
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"rel_path": null
|
| 24 |
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},
|
| 25 |
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"summary": {
|
| 26 |
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"coords": "skipped (already_generated)",
|
| 27 |
+
"patch_features": {
|
| 28 |
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"conch_v15": "completed"
|
| 29 |
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},
|
| 30 |
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"segmentation": "skipped (already_segmented)",
|
| 31 |
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"slide_features": {
|
| 32 |
+
"titan": "completed"
|
| 33 |
+
}
|
| 34 |
+
},
|
| 35 |
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"tasks": {
|
| 36 |
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|
| 37 |
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"_active_attempt_id": null,
|
| 38 |
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"attempts": [],
|
| 39 |
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"message": "Patch coords already generated; skipping.",
|
| 40 |
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"outputs": {
|
| 41 |
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"coords_h5": {
|
| 42 |
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"bytes": 73992,
|
| 43 |
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"exists": true,
|
| 44 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/3098_patches.h5"
|
| 45 |
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}
|
| 46 |
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},
|
| 47 |
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"reason": "already_generated",
|
| 48 |
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"status": "skipped"
|
| 49 |
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},
|
| 50 |
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"patch_features:conch_v15": {
|
| 51 |
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|
| 52 |
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"attempts": [
|
| 53 |
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{
|
| 54 |
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"attempt_id": "ad6bbde59bb0",
|
| 55 |
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"duration_s": 16.707579851150513,
|
| 56 |
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|
| 57 |
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"finished_at": "2026-10-07T18:51:02+0200",
|
| 58 |
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"finished_epoch": 1791391862.1807687,
|
| 59 |
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|
| 60 |
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"started_at": "2026-10-07T18:50:45+0200",
|
| 61 |
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"started_epoch": 1791391845.4731889
|
| 62 |
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}
|
| 63 |
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],
|
| 64 |
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"message": "Patch features extracted.",
|
| 65 |
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"outputs": {
|
| 66 |
+
"coords_path": {
|
| 67 |
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"bytes": 73992,
|
| 68 |
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"exists": true,
|
| 69 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/patches/3098_patches.h5"
|
| 70 |
+
},
|
| 71 |
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"features_path": {
|
| 72 |
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"bytes": 3124680,
|
| 73 |
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"exists": true,
|
| 74 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/3098.h5"
|
| 75 |
+
}
|
| 76 |
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},
|
| 77 |
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"reason": null,
|
| 78 |
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"status": "completed"
|
| 79 |
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},
|
| 80 |
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"segmentation": {
|
| 81 |
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"_active_attempt_id": null,
|
| 82 |
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"attempts": [],
|
| 83 |
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"message": "Tissue already segmented; skipping.",
|
| 84 |
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"outputs": {
|
| 85 |
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"contour_jpg": {
|
| 86 |
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"bytes": 129591,
|
| 87 |
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"exists": true,
|
| 88 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3098.jpg"
|
| 89 |
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}
|
| 90 |
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},
|
| 91 |
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"reason": "already_segmented",
|
| 92 |
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"status": "skipped"
|
| 93 |
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},
|
| 94 |
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"slide_features:titan": {
|
| 95 |
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"_active_attempt_id": null,
|
| 96 |
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"attempts": [
|
| 97 |
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{
|
| 98 |
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"attempt_id": "28c1f1a16a7e",
|
| 99 |
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"duration_s": 0.24514389038085938,
|
| 100 |
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"error": null,
|
| 101 |
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"finished_at": "2026-10-07T18:53:44+0200",
|
| 102 |
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"finished_epoch": 1791392024.9719112,
|
| 103 |
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"result": "completed",
|
| 104 |
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"started_at": "2026-10-07T18:53:44+0200",
|
| 105 |
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"started_epoch": 1791392024.7267673
|
| 106 |
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}
|
| 107 |
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],
|
| 108 |
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"message": "Slide features extracted.",
|
| 109 |
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"outputs": {
|
| 110 |
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"patch_features_path": {
|
| 111 |
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"bytes": 3124680,
|
| 112 |
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"exists": true,
|
| 113 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/features_conch_v15/3098.h5"
|
| 114 |
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},
|
| 115 |
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"slide_features_path": {
|
| 116 |
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"bytes": 109168,
|
| 117 |
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"exists": true,
|
| 118 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_1024px_0px_overlap/slide_features_titan/3098.h5"
|
| 119 |
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}
|
| 120 |
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},
|
| 121 |
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"reason": null,
|
| 122 |
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"status": "completed"
|
| 123 |
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}
|
| 124 |
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},
|
| 125 |
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"trident_version": "0.3.0",
|
| 126 |
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"updated_at": "2026-10-07T18:53:44+0200"
|
| 127 |
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}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3098__3f7ece364808.json
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
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|
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|
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|
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|
|
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|
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|
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|
|
|
|
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|
|
| 1 |
+
{
|
| 2 |
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"meta": {
|
| 3 |
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"mpp": 0.5
|
| 4 |
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},
|
| 5 |
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"resume": {
|
| 6 |
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"last_status": "completed",
|
| 7 |
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"last_task": "patch_features:conch_v1",
|
| 8 |
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"last_updated_at": "2026-10-07T20:52:56+0200"
|
| 9 |
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},
|
| 10 |
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"schema_version": 2,
|
| 11 |
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"slide": {
|
| 12 |
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"abs_path": "/local/jobs/u25798_16540702/wsi-cache-16540702/gpu_0/batch_1/3098.tif",
|
| 13 |
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"ext": ".tif",
|
| 14 |
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"id": "3098.tif__3f7ece364808",
|
| 15 |
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"name": "3098",
|
| 16 |
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"reader_type": "OpenSlideWSI",
|
| 17 |
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"rel_path": null
|
| 18 |
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},
|
| 19 |
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"summary": {
|
| 20 |
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"coords": "skipped (already_generated)",
|
| 21 |
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"patch_features": {
|
| 22 |
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|
| 23 |
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},
|
| 24 |
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|
| 25 |
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},
|
| 26 |
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"tasks": {
|
| 27 |
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|
| 28 |
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|
| 29 |
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"attempts": [],
|
| 30 |
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"message": "Patch coords already generated; skipping.",
|
| 31 |
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"outputs": {
|
| 32 |
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"coords_h5": {
|
| 33 |
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"bytes": 17800,
|
| 34 |
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"exists": true,
|
| 35 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/3098_patches.h5"
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| 36 |
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}
|
| 37 |
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},
|
| 38 |
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"reason": "already_generated",
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| 39 |
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| 40 |
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| 41 |
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| 42 |
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| 43 |
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| 44 |
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{
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| 45 |
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"attempt_id": "f351fca6771b",
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| 46 |
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| 48 |
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| 50 |
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| 51 |
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| 52 |
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"started_epoch": 1791399125.7924154
|
| 53 |
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}
|
| 54 |
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],
|
| 55 |
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"message": "Patch features extracted.",
|
| 56 |
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"outputs": {
|
| 57 |
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"coords_path": {
|
| 58 |
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"bytes": 17800,
|
| 59 |
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"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/patches/3098_patches.h5"
|
| 61 |
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|
| 62 |
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"features_path": {
|
| 63 |
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"bytes": 185032,
|
| 64 |
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"exists": true,
|
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/10x_2048px_0px_overlap/features_conch_v1/3098.h5"
|
| 66 |
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}
|
| 67 |
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|
| 68 |
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"reason": null,
|
| 69 |
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"status": "completed"
|
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},
|
| 71 |
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"segmentation": {
|
| 72 |
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|
| 73 |
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|
| 74 |
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"message": "Tissue already segmented; skipping.",
|
| 75 |
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"outputs": {
|
| 76 |
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"contour_jpg": {
|
| 77 |
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"bytes": 129591,
|
| 78 |
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"exists": true,
|
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3098.jpg"
|
| 80 |
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}
|
| 81 |
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},
|
| 82 |
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"reason": "already_segmented",
|
| 83 |
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"status": "skipped"
|
| 84 |
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}
|
| 85 |
+
},
|
| 86 |
+
"trident_version": "0.3.0",
|
| 87 |
+
"updated_at": "2026-10-07T20:52:56+0200"
|
| 88 |
+
}
|
Run-Information/prep/UBC-OCEAN/wsi_states/3098__4dc0b9631a98.json
ADDED
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@@ -0,0 +1,88 @@
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|
| 1 |
+
{
|
| 2 |
+
"meta": {
|
| 3 |
+
"mpp": 0.5
|
| 4 |
+
},
|
| 5 |
+
"resume": {
|
| 6 |
+
"last_status": "completed",
|
| 7 |
+
"last_task": "patch_features:keep",
|
| 8 |
+
"last_updated_at": "2026-10-07T15:35:51+0200"
|
| 9 |
+
},
|
| 10 |
+
"schema_version": 2,
|
| 11 |
+
"slide": {
|
| 12 |
+
"abs_path": "/local/jobs/u25798_16540613/wsi-cache-16540613/gpu_0/batch_1/3098.tif",
|
| 13 |
+
"ext": ".tif",
|
| 14 |
+
"id": "3098.tif__4dc0b9631a98",
|
| 15 |
+
"name": "3098",
|
| 16 |
+
"reader_type": "OpenSlideWSI",
|
| 17 |
+
"rel_path": null
|
| 18 |
+
},
|
| 19 |
+
"summary": {
|
| 20 |
+
"coords": "skipped (already_generated)",
|
| 21 |
+
"patch_features": {
|
| 22 |
+
"keep": "completed"
|
| 23 |
+
},
|
| 24 |
+
"segmentation": "skipped (already_segmented)"
|
| 25 |
+
},
|
| 26 |
+
"tasks": {
|
| 27 |
+
"coords": {
|
| 28 |
+
"_active_attempt_id": null,
|
| 29 |
+
"attempts": [],
|
| 30 |
+
"message": "Patch coords already generated; skipping.",
|
| 31 |
+
"outputs": {
|
| 32 |
+
"coords_h5": {
|
| 33 |
+
"bytes": 27920,
|
| 34 |
+
"exists": true,
|
| 35 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/3098_patches.h5"
|
| 36 |
+
}
|
| 37 |
+
},
|
| 38 |
+
"reason": "already_generated",
|
| 39 |
+
"status": "skipped"
|
| 40 |
+
},
|
| 41 |
+
"patch_features:keep": {
|
| 42 |
+
"_active_attempt_id": null,
|
| 43 |
+
"attempts": [
|
| 44 |
+
{
|
| 45 |
+
"attempt_id": "84878bad5e7e",
|
| 46 |
+
"duration_s": 33.26693630218506,
|
| 47 |
+
"error": null,
|
| 48 |
+
"finished_at": "2026-10-07T15:35:51+0200",
|
| 49 |
+
"finished_epoch": 1791380151.9759936,
|
| 50 |
+
"result": "completed",
|
| 51 |
+
"started_at": "2026-10-07T15:35:18+0200",
|
| 52 |
+
"started_epoch": 1791380118.7090573
|
| 53 |
+
}
|
| 54 |
+
],
|
| 55 |
+
"message": "Patch features extracted.",
|
| 56 |
+
"outputs": {
|
| 57 |
+
"coords_path": {
|
| 58 |
+
"bytes": 27920,
|
| 59 |
+
"exists": true,
|
| 60 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/patches/3098_patches.h5"
|
| 61 |
+
},
|
| 62 |
+
"features_path": {
|
| 63 |
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"bytes": 872696,
|
| 64 |
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"exists": true,
|
| 65 |
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"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/20x_2048px_0px_overlap/features_keep/3098.h5"
|
| 66 |
+
}
|
| 67 |
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},
|
| 68 |
+
"reason": null,
|
| 69 |
+
"status": "completed"
|
| 70 |
+
},
|
| 71 |
+
"segmentation": {
|
| 72 |
+
"_active_attempt_id": null,
|
| 73 |
+
"attempts": [],
|
| 74 |
+
"message": "Tissue already segmented; skipping.",
|
| 75 |
+
"outputs": {
|
| 76 |
+
"contour_jpg": {
|
| 77 |
+
"bytes": 129591,
|
| 78 |
+
"exists": true,
|
| 79 |
+
"path": "/projects/extern/kisski/kisski-imm/dir.project/thanm_WSI/runs-information/full-int-UBC-OCEAN/contours/3098.jpg"
|
| 80 |
+
}
|
| 81 |
+
},
|
| 82 |
+
"reason": "already_segmented",
|
| 83 |
+
"status": "skipped"
|
| 84 |
+
}
|
| 85 |
+
},
|
| 86 |
+
"trident_version": "0.3.0",
|
| 87 |
+
"updated_at": "2026-10-07T15:35:51+0200"
|
| 88 |
+
}
|