Update Mimic4Dataset.py
Browse files- Mimic4Dataset.py +2 -2
Mimic4Dataset.py
CHANGED
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@@ -136,7 +136,7 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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if self.config.name == 'Readmission' and self.config_path is None : self.config_path = _CONFIG_URLS['readmission']
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if self.config.name == 'Length of Stay' and self.config_path is None : self.config_path = _CONFIG_URLS['los']
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if self.config.name == 'Mortality' and self.config_path is None : self.config_path = _CONFIG_URLS['mortality']
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repo_url='https://github.com/healthylaife/MIMIC-IV-Data-Pipeline'
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if os.path.exists(os.path.dirname(os.path.abspath('MIMIC-IV-Data-Pipeline-main'))):
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path_bench = os.path.dirname(os.path.abspath('MIMIC-IV-Data-Pipeline-main'))+'/MIMIC-IV-Data-Pipeline-main'
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@@ -161,7 +161,7 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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shutil.move(file_path, path_bench+'/model')
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data_dir = path_bench + "/data/dataDic"
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task_cohort(self.name,self.mimic_path, path_bench, self.config_path)
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return [
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datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": data_dir}),
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]
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if self.config.name == 'Readmission' and self.config_path is None : self.config_path = _CONFIG_URLS['readmission']
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if self.config.name == 'Length of Stay' and self.config_path is None : self.config_path = _CONFIG_URLS['los']
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if self.config.name == 'Mortality' and self.config_path is None : self.config_path = _CONFIG_URLS['mortality']
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+
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repo_url='https://github.com/healthylaife/MIMIC-IV-Data-Pipeline'
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if os.path.exists(os.path.dirname(os.path.abspath('MIMIC-IV-Data-Pipeline-main'))):
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path_bench = os.path.dirname(os.path.abspath('MIMIC-IV-Data-Pipeline-main'))+'/MIMIC-IV-Data-Pipeline-main'
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shutil.move(file_path, path_bench+'/model')
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data_dir = path_bench + "/data/dataDic"
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task_cohort(self.config.name,self.mimic_path, path_bench, self.config_path)
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return [
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datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": data_dir}),
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]
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