code stringlengths 114 1.05M | path stringlengths 3 312 | quality_prob float64 0.5 0.99 | learning_prob float64 0.2 1 | filename stringlengths 3 168 | kind stringclasses 1
value |
|---|---|---|---|---|---|
# Samplitude [](https://travis-ci.com/pgdr/samplitude)
CLI generation and plotting of random variables:
```bash
$ samplitude "sin(0.31415) | sample(6) | round | cli"
0.0
0.309
0.588
0.809
0.951
1.0
```
The word _samplitude_ is a portmanteau of _... | /samplitude-0.2.0.tar.gz/samplitude-0.2.0/README.md | 0.765243 | 0.970882 | README.md | pypi |
import numpy as np
from .jit_compiled_functions import (sampling_get_potential_targets,
sampling_sample_from_array_condition)
class BaseSamplingSingleSpecies:
"""
Base Class for single species sampling.
"""
def __init__(self, target_species=None, **kwargs):
... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/intervention/sampling.py | 0.878536 | 0.372077 | sampling.py | pypi |
import numpy as np
from ..pandas_xs.pandas_xs import DataFrameXS
from .jit_compiled_functions import vaccination_apply_vaccine_from_array_condition
class BaseVaccinationSingleSpeciesDisease:
def __init__(self, disease=None, **kwargs):
if disease is None:
raise ValueError(
"No d... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/intervention/vaccination.py | 0.744099 | 0.390243 | vaccination.py | pypi |
import numpy as np
from .jit_compiled_functions import culling_apply_culling_from_array_condition
class BaseCullingSingleSpecies:
def __init__(self, species=None, **kwargs):
if species is None:
raise ValueError(
"No agent object provided for the culling. Should be provided usin... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/intervention/culling.py | 0.804521 | 0.364353 | culling.py | pypi |
from .base import BaseTwoSpeciesDisease
from .transition import TransitionCustomProbPermanentImmunity
from .transmission import ContactTransmissionSameGraph
from ...utils.decorators import sampy_class
@sampy_class
class TwoSpeciesContactCustomProbTransitionPermanentImmunity(BaseTwoSpeciesDisease,
... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/disease/two_species/builtin_disease.py | 0.847148 | 0.556038 | builtin_disease.py | pypi |
import numpy as np
from .jit_compiled_functions import base_contaminate_vertices
class BaseTwoSpeciesDisease:
"""Base class for two species disease. This building block expects the following kwargs:
:param disease_name: mandatory kwargs. String.
:param host1: mandatory kwargs. Population object of the fi... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/disease/two_species/base.py | 0.77081 | 0.367185 | base.py | pypi |
import numpy as np
from .jit_compiled_functions import *
from ...utils.errors_shortcut import check_col_exists_good_type
class BaseSingleSpeciesDisease:
def __init__(self, disease_name=None, host=None, **kwargs):
# check values have been given
if host is None:
raise ValueError("No host... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/disease/single_species/base.py | 0.763043 | 0.289711 | base.py | pypi |
import numpy as np
import math
import numba as nb
@nb.njit
def topology_convert_1d_array_to_2d_array(arr_1d, arr_fast_squarify, shape_0, shape_1):
rv = np.full((shape_0, shape_1), arr_1d[0])
for i in range(arr_1d.shape[0]):
rv[arr_fast_squarify[i][0]][arr_fast_squarify[i][1]] = arr_1d[i]
return rv... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/graph/jit_compiled_functions.py | 0.487063 | 0.543045 | jit_compiled_functions.py | pypi |
from .misc import (create_grid_hexagonal_cells,
create_grid_square_cells,
create_grid_square_with_diagonals,
SubdividedIcosahedron)
from .jit_compiled_functions import (get_oriented_neighborhood_of_vertices,
get_surface_array,... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/graph/topology.py | 0.840357 | 0.441553 | topology.py | pypi |
import numpy as np
from .jit_compiled_functions import compute_sin_attr_with_condition
from ..pandas_xs.pandas_xs import DataFrameXS
class BaseVertexAttributes:
def __init__(self, **kwargs):
if not hasattr(self, 'df_attributes'):
self.df_attributes = DataFrameXS()
def _sampy_debug_create_... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/graph/vertex_attributes.py | 0.741487 | 0.456168 | vertex_attributes.py | pypi |
from .topology import (SquareGridWithDiagTopology,
SquareGridTopology,
SquareGridsConvertBetween1DArrayAnd2DArrays,
IcosphereTopology)
from .vertex_attributes import PeriodicAttributes, BaseVertexAttributes, AttributesFrom2DArraysSquareGrids
from .fro... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/graph/builtin_graph.py | 0.790207 | 0.266584 | builtin_graph.py | pypi |
import numpy as np
def create_2d_coords_from_oriented_connection_matrix(connections, index_first_vertex, coord_first_vertex,
list_vectors):
"""
WARNING: The graph is assumed to be connected.
Create the coordinates (2D) of each vertex of the graph. The ... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/graph/spatial_functions.py | 0.744749 | 0.927462 | spatial_functions.py | pypi |
from ..pandas_xs.pandas_xs import DataFrameXS
from .misc import convert_graph_structure_to_dictionary
import numpy as np
import os
import shutil
import json
import glob
class SaveAndLoadSquareGrids:
"""
Add to the square grids graphs the possibility to save them using their own special format.
We also p... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/graph/from_files.py | 0.582016 | 0.280302 | from_files.py | pypi |
import numpy as np
from .jit_compiled_functions import *
from ..pandas_xs.pandas_xs import DataFrameXS
from ..utils.errors_shortcut import (check_col_exists_good_type,
check_input_array)
class TerritorialMovementWithoutResistance:
"""
Add graph based movements abilities to... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/agent/movement.py | 0.772359 | 0.540378 | movement.py | pypi |
import pandas as pd
import numpy as np
from .jit_compiled_functions import (count_nb_agent_per_vertex,
conditional_count_nb_agent_per_vertex)
from ..pandas_xs.pandas_xs import DataFrameXS
class BaseAgingAgent:
"""
Base class for aging agents, i.e. agents having an age attr... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/agent/base.py | 0.607547 | 0.419707 | base.py | pypi |
import numpy as np
from .jit_compiled_functions import (reproduction_find_random_mate_on_position,
reproduction_find_random_mate_on_position_condition,
reproduction_find_random_mate_on_position_polygamous,
rep... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/agent/reproduction.py | 0.5769 | 0.343287 | reproduction.py | pypi |
import numpy as np
class ParamManager:
def __init__(self, names, values):
for name, value in zip(names, values):
setattr(self, name, value)
class CsvManager:
"""
Realistically, most of Sampy's run will be done during sensitivity analysis to assert that the model is a faithful
rep... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/data_processing/csv_manager.py | 0.657098 | 0.599133 | csv_manager.py | pypi |
import numpy as np
import numba as nb
@nb.njit
def conditional_proximity_is_step_allowed_return_infos(arr_selected_agents, distances, indices, arr_radius_point,
condition_on_grid):
rv = np.full(arr_selected_agents.shape, False, dtype=np.bool_)
r_d = np.fu... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/spatial/jit_compiled_functions.py | 0.410756 | 0.516717 | jit_compiled_functions.py | pypi |
import numpy as np
def check_input_array(array, name_argument, prefix_dtype, nb_dim=None, shape=None):
if not isinstance(array, np.ndarray):
raise TypeError("The parameter " + name_argument + " should be an array.")
if not str(array.dtype).startswith(prefix_dtype):
raise TypeError("The paramet... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/utils/errors_shortcut.py | 0.515376 | 0.450722 | errors_shortcut.py | pypi |
from ...agent.base import BaseAgingAgent
from ...agent.mortality import NaturalMortalityOrmMethodology, OffspringDependantOnParents
from ...agent.reproduction import (OffspringCreationWithCustomProb,
FindMateMonogamous,
FindMatePolygamous)
from... | /sampy_abm-1.0.2-py3-none-any.whl/sampy/addons/ORM_related_addons/ORM_like_agents.py | 0.844313 | 0.558026 | ORM_like_agents.py | pypi |
import collections
from sampyl.core import auto_grad_logp, np
from sampyl.state import func_var_names, State
class BasePosterior(object):
""" Base posterior model for subclassing. """
def __init__(self):
self._logp_cache = {}
self._grad_cache = {}
def logp(self, state):
""" Retur... | /sampyl-mcmc-0.3.tar.gz/sampyl-mcmc-0.3/sampyl/posterior.py | 0.830319 | 0.45308 | posterior.py | pypi |
import numbers
from sampyl.core import np
from scipy.special import gamma
def fails_constraints(*conditions):
""" Utility function for catching out of bound parameters. Returns True if
any of the conditions aren't met. Typically you'll use this at the
beginning of defining the log P(X) functions.... | /sampyl-mcmc-0.3.tar.gz/sampyl-mcmc-0.3/sampyl/distributions.py | 0.902523 | 0.605158 | distributions.py | pypi |
from __future__ import division
import sampyl
from sampyl.core import np
import collections
class State(collections.OrderedDict):
""" State object for storing parameter values.
Inherits from OrderedDict.
"""
def tovector(self):
""" Return the parameter values as a flat vector. ... | /sampyl-mcmc-0.3.tar.gz/sampyl-mcmc-0.3/sampyl/state.py | 0.828384 | 0.466299 | state.py | pypi |
from __future__ import division
from ..core import np
from ..state import State
from .base import Sampler
from ..model import Model
class Hamiltonian(Sampler):
def __init__(self, logp, start, step_size=1, n_steps=5, **kwargs):
""" Hamiltonian MCMC sampler. Uses the gradient of log P(theta) to
... | /sampyl-mcmc-0.3.tar.gz/sampyl-mcmc-0.3/sampyl/samplers/hamiltonian.py | 0.881806 | 0.62478 | hamiltonian.py | pypi |
from __future__ import division
from ..core import np
from ..state import State
from .base import Sampler
class Metropolis(Sampler):
# TODO: Allow for sticking in different proposal distributions.
""" Metropolis-Hastings sampler for drawing from a distribution
defined by a logp function.
Has... | /sampyl-mcmc-0.3.tar.gz/sampyl-mcmc-0.3/sampyl/samplers/metropolis.py | 0.613237 | 0.562717 | metropolis.py | pypi |
from itertools import count
import time
import unicodedata
from ..core import np, auto_grad_logp, AUTOGRAD
from ..parallel import parallel
from ..progressbar import update_progress
from ..state import State, func_var_names
from ..posterior import init_posterior
class Sampler(object):
def __init__(self, logp, sta... | /sampyl-mcmc-0.3.tar.gz/sampyl-mcmc-0.3/sampyl/samplers/base.py | 0.569853 | 0.248096 | base.py | pypi |
from __future__ import division
from ..core import np
from ..state import State
from .base import Sampler
class Slice(Sampler):
""" Slice sampler (Neal, 2003) for creating a Markov chain that
leaves the the distribution defined by logp invariant
For technical details, see Neal's paper:
... | /sampyl-mcmc-0.3.tar.gz/sampyl-mcmc-0.3/sampyl/samplers/slice.py | 0.822082 | 0.421254 | slice.py | pypi |
from __future__ import division
import collections
from ..core import np
from .base import Sampler
from .hamiltonian import energy, leapfrog, initial_momentum
class NUTS(Sampler):
""" No-U-Turn sampler (Hoffman & Gelman, 2014) for sampling from a
probability distribution defined by a log P(theta) functi... | /sampyl-mcmc-0.3.tar.gz/sampyl-mcmc-0.3/sampyl/samplers/NUTS.py | 0.899881 | 0.649912 | NUTS.py | pypi |
""""""""""""
SamRand
""""""""""""
============
Introduction
============
SamRand is a tool designed to sample datasets and produce statistically representative samples for research purposes.
----------------
Who is this for?
----------------
I developed this primarily for researchers who deal with large datasets, an... | /samrand-0.1.0.tar.gz/samrand-0.1.0/README.rst | 0.949412 | 0.885186 | README.rst | pypi |
from bson import ObjectId
from typing import Dict, List, Tuple, Any, Union
try:
# When used in the SAMS API errors will inherit from Werkzeug errors
# to ensure Eve Validation errors are passed through here
from werkzeug.exceptions import HTTPException, BadRequest as BaseException
except ImportError:
... | /sams-client-0.3.2.tar.gz/sams-client-0.3.2/sams_client/errors.py | 0.894654 | 0.214362 | errors.py | pypi |
from typing import Dict, Any, List
from requests import Response
from superdesk.default_settings import env
import sams_client.default_settings as default_config
from .constants import DEFAULT_HOST, DEFAULT_PORT, DEFAULT_PROTOCOL
not_analyzed = {'type': 'string', 'index': 'not_analyzed'}
def load_config(config: D... | /sams-client-0.3.2.tar.gz/sams-client-0.3.2/sams_client/utils.py | 0.896546 | 0.183685 | utils.py | pypi |
from typing import NamedTuple, List, Dict, Any, Union
from typing_extensions import TypedDict
from datetime import datetime
from bson import ObjectId
from sams_client.utils import schema_relation, not_analyzed
class AssetStates(NamedTuple):
"""Named tuple for Asset states
The state of an *Asset* defines th... | /sams-client-0.3.2.tar.gz/sams-client-0.3.2/sams_client/schemas/assets.py | 0.92948 | 0.339992 | assets.py | pypi |
from typing import NamedTuple
#: Set states
class SetStates(NamedTuple):
DRAFT: str
USABLE: str
DISABLED: str
SET_STATES: SetStates = SetStates('draft', 'usable', 'disabled')
"""
The state of a *Set* defines the available actions on it. \
A *Set* can be in any one of the following states:
* **DRAFT:**... | /sams-client-0.3.2.tar.gz/sams-client-0.3.2/sams_client/schemas/sets.py | 0.889096 | 0.576989 | sets.py | pypi |
from typing import Dict, Any, Callable, Union, Optional
from bson import ObjectId
import requests
class SamsImagesEndpoint:
"""Helper class for Image Assets"""
_download_image_url = '/consume/assets/images'
_generate_image_rendition_url = '/produce/assets/images'
def __init__(self, client):
... | /sams-client-0.3.2.tar.gz/sams-client-0.3.2/sams_client/endpoints/images.py | 0.945311 | 0.170992 | images.py | pypi |
import math
import matplotlib.pyplot as plt
from .Generaldistribution import Distribution
class Gaussian(Distribution):
""" Gaussian distribution class for calculating and
visualizing a Gaussian distribution.
Attributes:
mean (float) representing the mean value of the distribution
stdev (float) representing ... | /sams_dsnd_probability-1.2.tar.gz/sams_dsnd_probability-1.2/sams_dsnd_probability/Gaussiandistribution.py | 0.688364 | 0.853058 | Gaussiandistribution.py | pypi |
from typing import Dict, List, Any
from eve.utils import ParsedRequest
from flask import json
from bson import ObjectId
from pymongo.cursor import Cursor as MongoCursor
from eve_elastic.elastic import ElasticCursor
from superdesk.services import BaseService
from sams_client.errors import SamsSystemErrors
from sams.f... | /sams-server-0.3.2.tar.gz/sams-server-0.3.2/sams/api/service.py | 0.892281 | 0.340814 | service.py | pypi |
from typing import Dict, List
from sams_client.errors import SamsStorageDestinationErrors
from .providers import Provider, providers
from .providers.base import SamsBaseStorageProvider
class Destination:
"""A Destination instance
:var str config_string: A string from any ``STORAGE_DESTINATION`` config att... | /sams-server-0.3.2.tar.gz/sams-server-0.3.2/sams/storage/destinations.py | 0.920812 | 0.280696 | destinations.py | pypi |
from typing import Union, BinaryIO
from bson import ObjectId
from superdesk.storage.superdesk_file import SuperdeskFile
from sams_client.errors import SamsConfigErrors
class SamsBaseStorageProvider(object):
"""An instance of SamsBaseStorageProvider
"""
type_name: str = None
name: str = None
co... | /sams-server-0.3.2.tar.gz/sams-server-0.3.2/sams/storage/providers/base.py | 0.939955 | 0.183942 | base.py | pypi |
from typing import BinaryIO, Union
from pymongo import MongoClient
from gridfs import GridFS
from gridfs.errors import NoFile
from gridfs.grid_file import GridOut, EMPTY
from bson import ObjectId
from superdesk.storage.superdesk_file import SuperdeskFile
from .base import SamsBaseStorageProvider
from sams_client.err... | /sams-server-0.3.2.tar.gz/sams-server-0.3.2/sams/storage/providers/mongo.py | 0.923264 | 0.216229 | mongo.py | pypi |
from importlib import import_module
from typing import Dict, List, Type
from sams_client.errors import SamsStorageProviderErrors
from .base import SamsBaseStorageProvider
class Provider:
"""A Provider instance
:var str config_string: An entry from the ``STORAGE_PROVIDERS`` config attribute
:var list[s... | /sams-server-0.3.2.tar.gz/sams-server-0.3.2/sams/storage/providers/__init__.py | 0.83545 | 0.229352 | __init__.py | pypi |
from typing import Dict, Any, List
from copy import deepcopy
from bson import ObjectId
from flask import current_app as app
from sams_client.schemas import SET_STATES
from sams.factory.service import SamsService
from sams.storage.destinations import Destination, destinations
from sams.storage.providers.base import ... | /sams-server-0.3.2.tar.gz/sams-server-0.3.2/sams/sets/service.py | 0.832203 | 0.195709 | service.py | pypi |
from typing import Union
from eve.utils import config
from bson import ObjectId
from superdesk.services import Service
from sams_client.errors import SamsResourceErrors
class SamsService(Service):
"""Sams Service
Base service for all endpoints, defines the basic implementation for CRUD functionality.
... | /sams-server-0.3.2.tar.gz/sams-server-0.3.2/sams/factory/service.py | 0.924756 | 0.209247 | service.py | pypi |
import os
import shutil
import numpy as np
import scipy.ndimage
import scipy.stats
import surfa as sf
from samseg.subregions import utils
from samseg.subregions.core import MeshModel
class HippoAmygdalaSubfields(MeshModel):
def __init__(self, side, wmParcFileName, resolution=0.33333, **kwargs):
atlasDi... | /subregions/hippocampus.py | 0.531209 | 0.445831 | hippocampus.py | pypi |
import os
import shutil
import numpy as np
import scipy.ndimage
import surfa as sf
from samseg.subregions import utils
from samseg.subregions.core import MeshModel
class ThalamicNuclei(MeshModel):
def __init__(self, **kwargs):
atlasDir = os.path.join(os.environ.get('FREESURFER_HOME'), 'average', 'Thalam... | /subregions/thalamus.py | 0.519278 | 0.397354 | thalamus.py | pypi |
import os
import shutil
import numpy as np
import scipy.ndimage
import surfa as sf
from samseg.subregions import utils
from samseg.subregions.core import MeshModel
class BrainstemSubstructures(MeshModel):
def __init__(self, **kwargs):
atlasDir = os.path.join(os.environ.get('FREESURFER_HOME'), 'average'... | /subregions/brainstem.py | 0.619817 | 0.338829 | brainstem.py | pypi |
import os
import scipy.ndimage
import numpy as np
import surfa as sf
from samseg import gems
def run(cmd):
"""
Run a command in a bash shell. Output is silenced, but is printed if an error occurs.
"""
print(f'Running command: {cmd}')
output, ret = sf.system.collect_output(cmd)
if ret != 0:
... | /subregions/utils.py | 0.459804 | 0.503723 | utils.py | pypi |
import os
import numpy as np
import datetime as dt
import surfa as sf
from samseg import gems
from samseg.subregions import utils
from samseg.subregions.thalamus import ThalamicNuclei
from samseg.subregions.brainstem import BrainstemSubstructures
from samseg.subregions.hippocampus import HippoAmygdalaSubfields
model_... | /subregions/process.py | 0.640523 | 0.357371 | process.py | pypi |
# Samshee
A schema-agnostic parser and writer for illumina® sample sheets v2 and similar documents.
## Features
- parsing and writing illumina® Sample Sheet v2 files.
- encoding to and parsing from json
- customizable validation, ships with a default validation schema that follows illumina® specs
## Examples
### R... | /samshee-0.1.10.tar.gz/samshee-0.1.10/README.md | 0.867219 | 0.928668 | README.md | pypi |
from samson.constructions.merkle_damgard_construction import MerkleDamgardConstruction
from samson.utilities.bytes import Bytes
from samson.utilities.manipulation import right_rotate, get_blocks
from samson.core.primitives import Primitive
from samson.core.metadata import ConstructionType, SizeSpec, SizeType, Frequency... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/hashes/sha2.py | 0.464902 | 0.261573 | sha2.py | pypi |
from samson.utilities.manipulation import right_rotate
from samson.utilities.bytes import Bytes
from samson.hashes.sha2 import H_512, H_256
from samson.core.primitives import Hash, Primitive
from samson.core.metadata import ConstructionType, SizeSpec, SizeType, FrequencyType
from samson.ace.decorators import register_p... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/hashes/blake2.py | 0.639736 | 0.415314 | blake2.py | pypi |
from samson.utilities.manipulation import left_rotate
from samson.constructions.merkle_damgard_construction import MerkleDamgardConstruction
from samson.hashes.md5 import state_to_bytes, bytes_to_state
from samson.utilities.bytes import Bytes
from samson.core.primitives import Primitive
from samson.core.metadata import... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/hashes/md4.py | 0.44553 | 0.278741 | md4.py | pypi |
import struct
from samson.utilities.manipulation import left_rotate
from samson.utilities.bytes import Bytes
from samson.constructions.merkle_damgard_construction import MerkleDamgardConstruction
from samson.core.primitives import Primitive
from samson.core.metadata import SizeSpec, SizeType, FrequencyType
from samson.... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/hashes/sha1.py | 0.658966 | 0.460835 | sha1.py | pypi |
from math import log
from samson.utilities.bytes import Bytes
from samson.utilities.manipulation import left_rotate
from samson.constructions.sponge_construction import SpongeConstruction
from samson.core.primitives import Hash, Primitive
from samson.core.metadata import ConstructionType, SizeSpec, SizeType, FrequencyT... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/hashes/keccak.py | 0.781581 | 0.307131 | keccak.py | pypi |
from samson.constructions.merkle_damgard_construction import MerkleDamgardConstruction
from samson.utilities.manipulation import left_rotate
from samson.utilities.bytes import Bytes
from samson.core.primitives import Primitive
from samson.core.metadata import SizeSpec, SizeType, FrequencyType
from samson.ace.decorators... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/hashes/md5.py | 0.547464 | 0.272049 | md5.py | pypi |
from samson.utilities.bytes import Bytes
from samson.utilities.manipulation import left_rotate
from samson.constructions.merkle_damgard_construction import MerkleDamgardConstruction
from samson.core.primitives import Primitive
from samson.core.metadata import SizeSpec, SizeType
from samson.ace.decorators import registe... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/hashes/ripemd160.py | 0.505615 | 0.290132 | ripemd160.py | pypi |
from samson.hashes.keccak import Keccak
from samson.core.primitives import Primitive
from samson.core.metadata import SizeSpec, SizeType, FrequencyType
from samson.ace.decorators import register_primitive
from samson.utilities.bytes import Bytes
@register_primitive()
class SHA3_224(Keccak):
OUTPUT_SIZE = SizeSpe... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/hashes/sha3.py | 0.770508 | 0.163379 | sha3.py | pypi |
from samson.block_ciphers.des import DES
from samson.utilities.bytes import Bytes
from samson.utilities.runtime import RUNTIME
from samson.core.base_object import BaseObject
import itertools
import string
class LM(BaseObject):
def __init__(self, plaintext: bytes=b'KGS!@#$%'):
self.plaintext = plaintext
... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/hashes/lm.py | 0.771241 | 0.213336 | lm.py | pypi |
from samson.utilities.bytes import Bytes
from samson.kdfs.s2v import dbl
from samson.core.primitives import MAC, Primitive, EncryptionAlg
from samson.ace.decorators import register_primitive
@register_primitive()
class PMAC(MAC):
"""
Parallelizable message authentication code.
http://web.cs.ucdavis.edu/~ro... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/macs/pmac.py | 0.752468 | 0.245922 | pmac.py | pypi |
from samson.utilities.bytes import Bytes
from samson.core.primitives import MAC, Primitive
from samson.core.metadata import FrequencyType, ConstructionType, SecurityProofType
from samson.ace.decorators import register_primitive
_MOD_128 = 2**128
@register_primitive()
class Poly1305(MAC):
"""
Message authentic... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/macs/poly1305.py | 0.902915 | 0.405478 | poly1305.py | pypi |
from samson.utilities.bytes import Bytes
from samson.core.primitives import MAC, Primitive
from samson.core.metadata import FrequencyType, UsageType
from samson.ace.decorators import register_primitive
@register_primitive()
class Michael(MAC):
"""
References:
"A Note on the Fragility of the 'Michael' ... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/macs/michael.py | 0.833731 | 0.327211 | michael.py | pypi |
from samson.macs.cbc_mac import CBCMAC
from samson.utilities.bytes import Bytes
from samson.block_ciphers.rijndael import Rijndael
from samson.core.primitives import MAC, Primitive, EncryptionAlg
from samson.core.metadata import FrequencyType
from samson.ace.decorators import register_primitive
@register_primitive()
c... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/macs/cmac.py | 0.697712 | 0.206854 | cmac.py | pypi |
from samson.utilities.bytes import Bytes
from samson.core.primitives import MAC, Primitive
from samson.core.metadata import FrequencyType
from samson.ace.decorators import register_primitive
from samson.hashes.sha3 import cSHAKE128, cSHAKE256
class KMAC(MAC):
USAGE_FREQUENCY = FrequencyType.UNUSUAL
def __init... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/macs/kmac.py | 0.848471 | 0.150434 | kmac.py | pypi |
from samson.math.general import is_primitive_root, find_prime, is_safe_prime, is_sophie_germain_prime, next_prime, is_prime
from samson.math.factorization.factors import Factors
from samson.utilities.exceptions import SearchspaceExhaustedException
from samson.auxiliary.roca import gen_roca_prime
import math
class PGen... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/prime_gen.py | 0.502441 | 0.298977 | prime_gen.py | pypi |
from samson.math.dense_vector import DenseVector
from samson.math.algebra.rings.ring import Ring, RingElement
from samson.math.algebra.rings.integer_ring import ZZ
from samson.math.general import gaussian_elimination, lll, gram_schmidt
from samson.utilities.runtime import RUNTIME
from shutil import get_terminal_size
fr... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/matrix.py | 0.738009 | 0.337395 | matrix.py | pypi |
from samson.core.base_object import BaseObject
def _calc_continued_fraction(frac: 'FractionFieldElement') -> list:
"""
Calculates the continued fraction form of `frac`.
Parameters:
frac (FractionFieldElement): Fraction.
Returns:
list: Continued fraction.
"""
n, d = frac.nu... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/continued_fraction.py | 0.887814 | 0.384623 | continued_fraction.py | pypi |
from samson.utilities.general import binary_search_list
from samson.core.base_object import BaseObject
from sortedcontainers import SortedDict
from copy import copy
class SparseVector(BaseObject):
"""
Sparse vector implementation. Saves on memory when representing high-dimensional vectors with many zeroes.
... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/sparse_vector.py | 0.630116 | 0.344995 | sparse_vector.py | pypi |
from samson.utilities.general import rand_bytes
from samson.utilities.exceptions import NotInvertibleException, ProbabilisticFailureException, SearchspaceExhaustedException, NoSolutionException
from samson.auxiliary.complexity import add_complexity, KnownComplexities
from samson.utilities.runtime import RUNTIME
from fu... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/general.py | 0.917344 | 0.358269 | general.py | pypi |
from samson.utilities.runtime import RUNTIME
from samson.core.base_object import BaseObject
from samson.math.general import gcd
from samson.math.algebra.rings.integer_ring import ZZ
from samson.math.fft.all import ntt_convolution, gss_convolution
from types import FunctionType
class DenseVector(BaseObject):
def __... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/dense_vector.py | 0.659953 | 0.444746 | dense_vector.py | pypi |
from samson.math.sparse_vector import SparseVector
from math import ceil, log
def _split(v, m, k):
K = 1 << (k-1)
zero = v[0].ring.zero
zeroes = [zero] * K
return [v[i:i+K] + zeroes for i in range(0, K << m, K)]
def _combine(L, m, k):
M = 1 << m
half_K = 1 << (k-1)
return L[0][:ha... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/fft/gss.py | 0.54359 | 0.537891 | gss.py | pypi |
from samson.math.algebra.rings.ring import Ring, RingElement
from samson.math.algebra.rings.integer_ring import ZZ
from samson.math.factorization.general import factor
from samson.math.map import Map
from samson.utilities.bytes import Bytes
from samson.utilities.exceptions import CoercionException
from typing import Tu... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/curves/montgomery_curve.py | 0.956759 | 0.425128 | montgomery_curve.py | pypi |
from samson.math.algebra.rings.ring import Ring, RingElement
from samson.math.general import random_int
from samson.utilities.bytes import Bytes
def bit(h,i):
return (h[i//8] >> (i%8)) & 1
# https://ed25519.cr.yp.to/python/ed25519.py
# https://tools.ietf.org/html/rfc8032
class TwistedEdwardsCurve(Ring):
"""
... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/curves/twisted_edwards_curve.py | 0.849191 | 0.410697 | twisted_edwards_curve.py | pypi |
from samson.math.algebra.curves.weierstrass_curve import EllipticCurve, WeierstrassPoint
from samson.math.map import Map
from samson.utilities.exceptions import NoSolutionException
from samson.utilities.runtime import RUNTIME
from samson.core.base_object import BaseObject
class EllipticCurveIsomorphism(Map):
def _... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/curves/elliptic_curve_isomorphism.py | 0.517083 | 0.204521 | elliptic_curve_isomorphism.py | pypi |
from samson.math.algebra.rings.ring import Ring, RingElement
from samson.math.general import mod_inv, xgcd, gcd, tonelli, generalized_eulers_criterion, ResidueSymbol, random_int
from samson.utilities.exceptions import CoercionException
from samson.auxiliary.lazy_loader import LazyLoader
_integer_ring = LazyLoader('_in... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/rings/quotient_ring.py | 0.876925 | 0.386995 | quotient_ring.py | pypi |
from samson.math.algebra.rings.ring import Ring
from samson.utilities.exceptions import CoercionException, NoSolutionException
from samson.math.matrix import Matrix
class MatrixRing(Ring):
"""
Ring of square matrices over a ring.
Examples:
>>> from samson.math.all import *
>>> M = MatrixRi... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/rings/matrix_ring.py | 0.900836 | 0.419172 | matrix_ring.py | pypi |
from samson.math.algebra.rings.ring import Ring, RingElement
from samson.utilities.exceptions import CoercionException
from samson.math.general import random_int
from samson.math.map import Map
from types import FunctionType
_NEG_MAP = lambda e: -e
class Endomorphism(RingElement):
def __init__(self, val: int, ri... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/rings/endomorphism_ring.py | 0.852014 | 0.299765 | endomorphism_ring.py | pypi |
from samson.math.algebra.rings.ring import Ring, RingElement
from samson.utilities.exceptions import CoercionException
from samson.auxiliary.lazy_loader import LazyLoader
from samson.math.general import mod_inv
from samson.math.symbols import oo
from samson.auxiliary.theme import PADIC_COEFF, PADIC_DEGREE, color_format... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/rings/padic_integers.py | 0.76454 | 0.238462 | padic_integers.py | pypi |
from samson.math.algebra.rings.ring import Ring, RingElement
from samson.utilities.exceptions import CoercionException
from samson.math.algebra.rings.polynomial_ring import PolynomialRing
from samson.math.polynomial import Polynomial
class CurvePolynomialElement(RingElement):
"""
Element of a `CurvePolynomialR... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/rings/curve_polynomial_ring.py | 0.901258 | 0.578805 | curve_polynomial_ring.py | pypi |
from samson.math.algebra.rings.ring import Ring, RingElement
from samson.math.general import totient, index_calculus
from samson.math.symbols import oo
from samson.utilities.runtime import RUNTIME
class MultiplicativeGroupElement(RingElement):
"""
Element of a `MultiplicativeGroup`.
"""
def __init__(s... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/rings/multiplicative_group.py | 0.870529 | 0.231973 | multiplicative_group.py | pypi |
from samson.math.algebra.rings.ring import Ring, RingElement
from samson.utilities.exceptions import CoercionException, NoSolutionException
from samson.math.general import is_prime, kth_root
from samson.math.factorization.general import factor
from samson.math.factorization.factors import Factors
from samson.math.symbo... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/rings/integer_ring.py | 0.843992 | 0.298364 | integer_ring.py | pypi |
from samson.math.algebra.rings.ring import Ring
from samson.math.algebra.rings.padic_integers import PAdicIntegerRing
from samson.math.algebra.fields.negative_degree_field import NegativeDegreeElement, NegativeDegreeField
from samson.auxiliary.lazy_loader import LazyLoader
_integer_ring = LazyLoader('_integer_ring', g... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/rings/padic_numbers.py | 0.842831 | 0.353958 | padic_numbers.py | pypi |
from samson.math.general import fast_mul, square_and_mul, is_prime, pohlig_hellman, bsgs, pollards_rho_log, mod_inv, xlcm, gcd
from samson.math.factorization.general import factor
from samson.math.factorization.factors import Factors
from types import FunctionType
from samson.utilities.runtime import RUNTIME
from samso... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/rings/ring.py | 0.881104 | 0.237686 | ring.py | pypi |
from samson.math.algebra.rings.ring import RingElement
from samson.math.algebra.rings.ring import Ring
from samson.utilities.exceptions import CoercionException
from samson.math.polynomial import Polynomial
from samson.math.symbols import Symbol
from samson.math.general import random_int
class PolynomialRing(Ring):
... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/rings/polynomial_ring.py | 0.931688 | 0.332825 | polynomial_ring.py | pypi |
from samson.math.algebra.rings.ring import Ring, RingElement
from samson.utilities.exceptions import CoercionException, NotInvertibleException
from samson.math.general import newton_method_sizes
from samson.math.symbols import oo, Symbol
from samson.math.algebra.rings.polynomial_ring import PolynomialRing, Polynomial
f... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/rings/power_series_ring.py | 0.829008 | 0.336713 | power_series_ring.py | pypi |
from samson.math.algebra.fields.real_field import RealField, RealElement
from samson.utilities.exceptions import CoercionException
class ComplexElement(RealElement):
"""
Element of a `ComplexField`.
"""
def sqrt(self) -> 'ComplexElement':
return self.field(self.field.ctx.sqrt(self.val))
... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/fields/complex_field.py | 0.766905 | 0.284446 | complex_field.py | pypi |
from samson.math.algebra.rings.ring import Ring, RingElement
from samson.utilities.exceptions import CoercionException
from samson.math.symbols import oo
import operator
class NegativeDegreeElement(RingElement):
"""
Element of an `NegativeDegreeField`.
"""
def __init__(self, val: RingElement, shift: ... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/fields/negative_degree_field.py | 0.82308 | 0.24049 | negative_degree_field.py | pypi |
from samson.math.general import is_prime
from samson.math.algebra.fields.field import Field, FieldElement
from samson.math.symbols import Symbol
from samson.math.polynomial import Polynomial
class FiniteFieldElement(FieldElement):
"""
Element of a `FiniteField`.
"""
def __init__(self, val: Polynomial,... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/fields/finite_field.py | 0.885173 | 0.535524 | finite_field.py | pypi |
from samson.math.algebra.fields.field import Field, FieldElement
from samson.math.algebra.rings.ring import Ring
from samson.math.algebra.rings.integer_ring import ZZ
from fractions import Fraction
class FractionFieldElement(FieldElement):
"""
Element of a `FractionField`.
"""
def __init__(self, nume... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/fields/fraction_field.py | 0.856182 | 0.241752 | fraction_field.py | pypi |
from samson.math.algebra.fields.field import Field, FieldElement
from samson.utilities.exceptions import CoercionException, NoSolutionException
from samson.utilities.runtime import RUNTIME
import mpmath
import math
class RealElement(FieldElement):
"""
Element of a `RealField`.
"""
def __init__(self, v... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/fields/real_field.py | 0.756762 | 0.223441 | real_field.py | pypi |
from samson.math.algebra.rings.ring import Ring
from samson.math.algebra.rings.power_series_ring import PowerSeriesElement
from samson.math.algebra.rings.polynomial_ring import Polynomial
from samson.math.algebra.fields.negative_degree_field import NegativeDegreeElement, NegativeDegreeField
class LaurentSeriesElement... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/algebra/fields/laurent_series.py | 0.730866 | 0.283639 | laurent_series.py | pypi |
from samson.utilities.general import add_or_increment
from samson.analysis.general import count_items
from samson.math.general import kth_root
from samson.core.base_object import BaseObject
from functools import reduce
from itertools import combinations, chain
from sortedcontainers import SortedDict
class Factors(Base... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/math/factorization/factors.py | 0.543348 | 0.169991 | factors.py | pypi |
from samson.math.algebra.curves.named import P256
from samson.math.algebra.curves.weierstrass_curve import WeierstrassPoint
from samson.math.general import random_int
from samson.utilities.bytes import Bytes
from samson.core.primitives import KeyExchangeAlg, Primitive
from samson.core.metadata import SizeType, SizeSpec... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/protocols/ecdhe.py | 0.887674 | 0.22448 | ecdhe.py | pypi |
from samson.public_key.rsa import RSA
from samson.padding.pkcs1v15_padding import PKCS1v15Padding
from samson.encoding.general import bytes_to_der_sequence
from samson.encoding.asn1 import HASH_OID_LOOKUP, INVERSE_HASH_OID_LOOKUP
from samson.utilities.bytes import Bytes
from pyasn1.type.univ import Sequence, OctetStrin... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/protocols/pkcs1v15_rsa_signer.py | 0.831246 | 0.153422 | pkcs1v15_rsa_signer.py | pypi |
from samson.utilities.bytes import Bytes
from samson.hashes.md5 import MD5
from samson.core.base_object import BaseObject
class RADIUS(BaseObject):
"""
Remote Authentication Dial In User Service (https://tools.ietf.org/html/rfc2865)
"""
def __init__(self, key: bytes):
"""
Parameters:
... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/protocols/radius.py | 0.840029 | 0.194062 | radius.py | pypi |
from samson.protocols.diffie_hellman import DiffieHellman
from samson.math.general import mod_inv
from samson.utilities.bytes import Bytes
from samson.core.base_object import BaseObject
class SocialistMillionare(BaseObject):
"""
Zero-Knowledge Proof of a secret using Diffie-Hellman exchanges.
"""
def ... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/protocols/socialist_millionare.py | 0.807802 | 0.353986 | socialist_millionare.py | pypi |
from samson.hashes.sha3 import SHAKE256
from samson.utilities.bytes import Bytes
from samson.ace.decorators import register_primitive
from samson.core.primitives import KeyExchangeAlg, Primitive
from samson.core.metadata import SizeType, SizeSpec, FrequencyType
from samson.protocols.sidh import SIDH, extract_prime_powe... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/protocols/sike.py | 0.747984 | 0.330228 | sike.py | pypi |
from samson.protocols.srp_client import SRPClient
from samson.hashes.sha2 import SHA256
from samson.utilities.bytes import Bytes
class SRPServer(object):
"""
Secure Remote Password protocol server
"""
def __init__(self, g: int=2, N: int=SRPClient.MODP_1024, hash_obj: object=SHA256(), b: int=None):
... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/protocols/srp_server.py | 0.844216 | 0.307293 | srp_server.py | pypi |
from samson.math.algebra.curves.montgomery_curve import MontgomeryCurve
from samson.math.algebra.curves.named import Curve25519
from samson.math.general import random_int_between
from samson.utilities.bytes import Bytes
from samson.core.primitives import KeyExchangeAlg, Primitive
from samson.core.metadata import SizeTy... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/protocols/dh25519.py | 0.912834 | 0.153771 | dh25519.py | pypi |
from samson.encoding.general import url_b64_decode, url_b64_encode
from samson.utilities.bytes import Bytes
from samson.utilities.exceptions import DecryptionException
from samson.protocols.jwt.jwa import JWA_ALG_MAP, JWAContentEncryptionAlg, JWAKeyEncryptionAlg
from samson.core.base_object import BaseObject
import jso... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/protocols/jwt/jwe.py | 0.808899 | 0.219902 | jwe.py | pypi |
from samson.encoding.general import url_b64_decode, url_b64_encode
from samson.utilities.bytes import Bytes
from samson.protocols.jwt.jwa import JWA_ALG_MAP, JWASignatureAlg
from samson.core.base_object import BaseObject
import json
class JWS(BaseObject):
"""
JSON Web Signature
"""
def __init__(self,... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/protocols/jwt/jws.py | 0.797793 | 0.247135 | jws.py | pypi |
from samson.analysis.general import count_items
from samson.math.general import is_prime, is_sophie_germain_prime, smoothness
from samson.math.factorization.general import factor
from samson.core.base_object import BaseObject
from samson.protocols.diffie_hellman import DiffieHellman
WELL_KNOWN_GROUPS = {
DiffieHel... | /samson-crypto-0.3.0.tar.gz/samson-crypto-0.3.0/samson/analysis/integer_analysis.py | 0.667148 | 0.237211 | integer_analysis.py | pypi |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.