Datasets:

xiangjx
/

MuPaD-examples

@@ -58,3 +58,9 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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+dataset_title,id,image_filename,organ,disease_state,oncotree_code,species,patient,st_technology,data_publication_date,license,study_link,download_page_link1,inter_spot_dist,spot_diameter,spots_under_tissue,preservation_method,nb_genes,treatment_comment,pixel_size_um_embedded,pixel_size_um_estimated,magnification,fullres_px_width,fullres_px_height,tissue,disease_comment,subseries,hest_version_added
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+Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,NCBI920,NCBI920.tif,Breast,Cancer,,Homo sapiens,B5,Xenium,2026-03-27,,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311609,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311609,100.0,100.0,3482,FFPE,541,,0.01,0.087024114237679,,65024,80130,Breast,"Carcinoma, NOS",Xenium Human Breast; GEO sample GSM9509171 (breast_breast_B5_B5),v1_3_1

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+{
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+  "subject": "Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples|B7",
+  "oncotree": "nan",
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+    "ADH1B",
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+    "AGR3",
+    "ALDH1A3",
+    "ANKRD30A",
+    "APOC1",
+    "AQP1",
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+    "AR",
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+    "C15orf48",
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+    "EGFR",
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+    "LYPD3",
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+    "MLPH",
+    "MMP12",
+    "MMP2",
+    "MS4A1",
+    "MUC6",
+    "MYH11",
+    "MYLK",
+    "MYO5B",
+    "NDUFA4L2",
+    "OPRPN",
+    "OXTR",
+    "PDGFRB",
+    "PECAM1",
+    "PGR",
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+    "PTN",
+    "S100A14",
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+    "SCGB2A1",
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+    "TFAP2A",
+    "TIGIT",
+    "TOMM7",
+    "TOP2A",
+    "TPD52",
+    "TRAC",
+    "TRAF4",
+    "VWF"
+  ]
+}

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+    "ANKRD30A",
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+    "MKI67",
+    "MLPH",
+    "MMP12",
+    "MMP2",
+    "MS4A1",
+    "MUC6",
+    "MYH11",
+    "MYLK",
+    "MYO5B",
+    "NDUFA4L2",
+    "OPRPN",
+    "OXTR",
+    "PDGFRB",
+    "PECAM1",
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+    "SERPINA3",
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+  ]
+}

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+{
+ "organ": "Breast",
+ "n_val": 3,
+ "n_test": 3,
+ "seed": 42,
+ "train": [
+  "NCBI917"
+ ],
+ "val": [
+  "NCBI920"
+ ],
+ "test": [
+  "NCBI920"
+ ]
+}