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results/paper/paper_oracle_panel_best_scoreboards.csv

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+panel,scoreboard,best_feature,auprc,auroc,mrr,recall_at_1,prevalence
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results/s2t/gasperini_gse120861/ensemble_proxy_residual_rank_weights.csv

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results/s2t/gasperini_gse120861/learned_deepset_skip_observed_hic_h64_b025_metrics.csv

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results/s2t/gasperini_gse120861/learned_gene_set_transformer_highconf_h64_heads4_l1_s05_g2_metrics.csv

@@ -0,0 +1,151 @@
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results/s2t/gasperini_gse120861/learned_lightgbm_distance_abc_jaspar2026_pilot_interactions_metrics.csv

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results/s2t/gasperini_gse120861/learned_logistic_e2g_activity_contact_c01_metrics.csv

@@ -0,0 +1,151 @@
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results/s2t/gasperini_gse120861/learned_logistic_lifted_ccre_metrics.csv

@@ -0,0 +1,97 @@
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results/s2t/gasperini_gse120861/learned_logistic_metrics.csv

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results/s2t/gasperini_gse120861/learned_molecular_residual_cage_highconf_c003_selections.csv

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results/s2t/gasperini_gse120861/learned_molecular_residual_proxy_v2_rich_strict_broad_c0p0003_metrics.csv

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results/s2t/gasperini_gse120861/learned_proxy_v2_rich_without_contact_high_confidence_c0p01_metrics.csv

@@ -0,0 +1,151 @@
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results/s2t/gasperini_gse120861/learned_proxy_v2_rich_without_contact_strict_c0p03_metrics.csv

@@ -0,0 +1,151 @@
+split_family,split,n_regions,n_pairs,n_positive,metric,value,logistic_penalty,logistic_c,tuned,tune_metric,training_label_policy,n_fit_pairs,n_fit_positive,model_name,model_version
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results/s2t/gasperini_gse120861/learned_pu_set_molecular_fold_meta.csv

@@ -0,0 +1,6 @@
+split_family,prior,n_train_pairs,n_train_positive
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results/s2t/gasperini_gse120861/learned_regime_ensemble_calibrated_molecular_lgbm_g005_weights.csv

@@ -0,0 +1,41 @@
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results/s2t/gasperini_gse120861/learned_residual_deepset_calibrated_gate_v1_selections.csv

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results/s2t/gasperini_gse120861/learned_residual_deepset_sweep_highconf_s0p75_l20p1_g2_metrics.csv

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results/s2t/gasperini_gse120861/learned_s2t_proxy_v2_without_coupling_interactions_logistic_metrics.csv

@@ -0,0 +1,151 @@
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results/s2t/gasperini_gse120861/learned_s2t_proxy_v2_without_re2g_inputs_logistic_metrics.csv

@@ -0,0 +1,151 @@
+split_family,split,n_regions,n_pairs,n_positive,metric,value,logistic_penalty,logistic_c,tuned,tune_metric,training_label_policy,n_fit_pairs,n_fit_positive,model_name,model_version
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+gene_holdout,val,72,781,82,auroc,0.8873128860043965,l2,0.003,False,,high_confidence,18106,207,s2t_proxy_v2_without_re2g_inputs_logistic,0.1.0
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+gene_holdout_rebalanced,test,1205,9430,155,recall_at_1,0.06390041493775933,l2,0.003,False,,high_confidence,12197,207,s2t_proxy_v2_without_re2g_inputs_logistic,0.1.0
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+gene_holdout_rebalanced,train,3641,25911,427,auprc,0.2527975700218542,l2,0.003,False,,high_confidence,12197,207,s2t_proxy_v2_without_re2g_inputs_logistic,0.1.0
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+gene_holdout_rebalanced,val,699,4981,82,recall_at_5,0.0944206008583691,l2,0.003,False,,high_confidence,12197,207,s2t_proxy_v2_without_re2g_inputs_logistic,0.1.0
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+enhancer_cluster_holdout,test,819,5961,85,recall_at_1,0.06837606837606838,l2,0.003,False,,high_confidence,13377,224,s2t_proxy_v2_without_re2g_inputs_logistic,0.1.0
+enhancer_cluster_holdout,test,819,5961,85,recall_at_3,0.07936507936507936,l2,0.003,False,,high_confidence,13377,224,s2t_proxy_v2_without_re2g_inputs_logistic,0.1.0
+enhancer_cluster_holdout,test,819,5961,85,recall_at_5,0.08058608058608059,l2,0.003,False,,high_confidence,13377,224,s2t_proxy_v2_without_re2g_inputs_logistic,0.1.0
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results/s2t/gasperini_gse120861/residual_sweep_summary.csv

@@ -0,0 +1,7 @@
+model_name,output_prefix,training_label_policy,residual_scale,residual_l2_weight,non_nearest_group_weight,status,strict_auprc,strict_auroc,strict_recall_at_1,strict_mrr,non_nearest_auprc,distance_100_500kb_auprc,mean_abs_residual_logit,meets_strict_floor,selection_rank
+residual_deepset_sweep_highconf_s0p75_l20p02_g2,learned_residual_deepset_sweep_highconf_s0p75_l20p02_g2,high_confidence,0.75,0.02,2.0,complete,0.28019573272547355,0.8794725377322912,0.07975962977622937,0.08812519234647906,0.3251560365046335,0.46732777304759887,0.7240437790860265,True,1.0
+residual_deepset_sweep_highconf_s0p75_l20p05_g2,learned_residual_deepset_sweep_highconf_s0p75_l20p05_g2,high_confidence,0.75,0.05,2.0,complete,0.2780831880322504,0.8780806706618807,0.08025233230769621,0.08829185491334401,0.3260893289724367,0.4580613926355726,0.5672128229105461,False,2.0
+residual_deepset_sweep_highconf_s0p75_l20p02_g4,learned_residual_deepset_sweep_highconf_s0p75_l20p02_g4,high_confidence,0.75,0.02,4.0,complete,0.2763409839071004,0.8776743935749358,0.07960923478370432,0.0878486259635075,0.32132805339945797,0.46465776288549937,0.7106738745986089,False,3.0
+residual_deepset_sweep_highconf_s0p75_l20p05_g4,learned_residual_deepset_sweep_highconf_s0p75_l20p05_g4,high_confidence,0.75,0.05,4.0,complete,0.2731481577816643,0.8760360915729354,0.079113078517914,0.08770733223951829,0.3264511012185879,0.46712255883345166,0.5955653671910836,False,4.0
+residual_deepset_sweep_highconf_s0p75_l20p1_g4,learned_residual_deepset_sweep_highconf_s0p75_l20p1_g4,high_confidence,0.75,0.1,4.0,complete,0.27111594426435903,0.8788864355689372,0.07943155295504208,0.08785273412891381,0.33262739466887625,0.4645434381064769,0.4172248011805765,False,5.0
+residual_deepset_sweep_highconf_s0p75_l20p1_g2,learned_residual_deepset_sweep_highconf_s0p75_l20p1_g2,high_confidence,0.75,0.1,2.0,complete,0.2689506657548334,0.8794158367546725,0.07825056244461161,0.08751604194814708,0.3276439646769132,0.47062304970220525,0.41571990432987505,False,6.0