Add HiLo model card and checkpoints
Browse files- .gitignore +1 -0
- CAS2023_checkpoint_best.pth +3 -0
- ImageCAS_checkpoint_best.pth +3 -0
- README.md +72 -0
.gitignore
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
.DS_Store
|
CAS2023_checkpoint_best.pth
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:9854a56b6f9c0fe13feb54ea822a7845a02a971a379430732c6ffdedf7598e43
|
| 3 |
+
size 271797810
|
ImageCAS_checkpoint_best.pth
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:b2a058b87780e0e19796f2f38289f8dde73af4d8db25acb0d3522c05a0ed928b
|
| 3 |
+
size 271802610
|
README.md
ADDED
|
@@ -0,0 +1,72 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
license: mit
|
| 3 |
+
library_name: pytorch
|
| 4 |
+
pipeline_tag: image-segmentation
|
| 5 |
+
tags:
|
| 6 |
+
- medical-image-segmentation
|
| 7 |
+
- 3d-segmentation
|
| 8 |
+
- vessel-segmentation
|
| 9 |
+
- nnunet
|
| 10 |
+
- pytorch
|
| 11 |
+
---
|
| 12 |
+
|
| 13 |
+
# HiLo: Spatial-Spectral Hybrid High-Low Frequency Activation for Heart and Brain Vessel Segmentation
|
| 14 |
+
|
| 15 |
+
HiLo is a 3D vessel segmentation framework for cardio-cerebrovascular imaging. It jointly models spatial and spectral high-/low-frequency cues to preserve fine tubular details while encoding large-scale anatomical structure.
|
| 16 |
+
|
| 17 |
+
> This work is published in [Expert Systems with Applications](https://www.sciencedirect.com/science/article/pii/S0957417426023626).
|
| 18 |
+
|
| 19 |
+
[](https://github.com/deepang-ai/HiLo)
|
| 20 |
+
[](https://huggingface.co/deepang/HiLo)
|
| 21 |
+
|
| 22 |
+
## Weights
|
| 23 |
+
|
| 24 |
+
- [ImageCAS checkpoint](https://huggingface.co/deepang/HiLo/blob/main/ImageCAS_checkpoint_best.pth)
|
| 25 |
+
- [CAS2023 checkpoint](https://huggingface.co/deepang/HiLo/blob/main/CAS2023_checkpoint_best.pth)
|
| 26 |
+
|
| 27 |
+
## Usage
|
| 28 |
+
|
| 29 |
+
Please use these weights with the official code repository:
|
| 30 |
+
|
| 31 |
+
```bash
|
| 32 |
+
git clone https://github.com/deepang-ai/HiLo.git
|
| 33 |
+
cd HiLo
|
| 34 |
+
```
|
| 35 |
+
|
| 36 |
+
Follow the installation, data preparation, training, evaluation, and inference instructions in the [HiLo README](https://github.com/deepang-ai/HiLo#readme). HiLo depends on the bundled project-adapted `nnUNet/` package in the code repository, so install it with:
|
| 37 |
+
|
| 38 |
+
```bash
|
| 39 |
+
pip install -e ./nnUNet
|
| 40 |
+
```
|
| 41 |
+
|
| 42 |
+
## Citation
|
| 43 |
+
|
| 44 |
+
If you use HiLo or these pretrained weights, please cite:
|
| 45 |
+
|
| 46 |
+
```bibtex
|
| 47 |
+
@article{HUANG2026133453,
|
| 48 |
+
title = {HiLo: Spatial-Spectral Hybrid High-Low Frequency Activation for Heart and Brain Vessel Segmentation},
|
| 49 |
+
journal = {Expert Systems with Applications},
|
| 50 |
+
pages = {133453},
|
| 51 |
+
year = {2026},
|
| 52 |
+
issn = {0957-4174},
|
| 53 |
+
doi = {https://doi.org/10.1016/j.eswa.2026.133453},
|
| 54 |
+
url = {https://www.sciencedirect.com/science/article/pii/S0957417426023626},
|
| 55 |
+
author = {Jiahui Huang and Xin Lei and Qiong Wang and Valentin Sinitsyn and Yun Zhu and Ying Hu and Hao Chen and Yan Pang}
|
| 56 |
+
}
|
| 57 |
+
```
|
| 58 |
+
|
| 59 |
+
Please also cite nnU-Net when using the bundled training framework:
|
| 60 |
+
|
| 61 |
+
```bibtex
|
| 62 |
+
@article{isensee2021nnunet,
|
| 63 |
+
title={nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation},
|
| 64 |
+
author={Isensee, Fabian and Jaeger, Paul F and Kohl, Simon AA and Petersen, Jens and Maier-Hein, Klaus H},
|
| 65 |
+
journal={Nature Methods},
|
| 66 |
+
volume={18},
|
| 67 |
+
number={2},
|
| 68 |
+
pages={203--211},
|
| 69 |
+
year={2021},
|
| 70 |
+
publisher={Nature Publishing Group}
|
| 71 |
+
}
|
| 72 |
+
```
|