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import torch
from torch import nn, einsum
import torch.nn.functional as F
from einops import rearrange, repeat
# Removed Rearrange import - not used in inference
# Removed unused imports for inference
from math import sqrt
from config_ftcn import config as my_cfg
# Initialize config
my_cfg.init_with_yaml()
my_cfg.update_with_yaml("ftcn_tt.yaml")
my_cfg.freeze()
# =============================================================================
# Basic Transformer Components
# =============================================================================
class Residual(nn.Module):
def __init__(self, fn):
super().__init__()
self.fn = fn
def forward(self, x, **kwargs):
return self.fn(x, **kwargs) + x
class PreNorm(nn.Module):
def __init__(self, dim, fn):
super().__init__()
self.norm = nn.LayerNorm(dim)
self.fn = fn
def forward(self, x, **kwargs):
return self.fn(self.norm(x), **kwargs)
class FeedForward(nn.Module):
def __init__(self, dim, hidden_dim, dropout = 0.):
super().__init__()
self.net = nn.Sequential(
nn.Linear(dim, hidden_dim),
nn.GELU(),
nn.Dropout(dropout),
nn.Linear(hidden_dim, dim),
nn.Dropout(dropout)
)
def forward(self, x):
return self.net(x)
class Attention(nn.Module):
def __init__(self, dim, heads = 8, dim_head = 64, dropout = 0.):
super().__init__()
inner_dim = dim_head * heads
project_out = not (heads == 1 and dim_head == dim)
self.heads = heads
self.scale = dim_head ** -0.5
self.to_qkv = nn.Linear(dim, inner_dim * 3, bias = False)
self.to_out = nn.Sequential(
nn.Linear(inner_dim, dim),
nn.Dropout(dropout)
) if project_out else nn.Identity()
def forward(self, x, mask = None):
b, n, _, h = *x.shape, self.heads
qkv = self.to_qkv(x).chunk(3, dim = -1)
q, k, v = map(lambda t: rearrange(t, 'b n (h d) -> b h n d', h = h), qkv)
dots = einsum('b h i d, b h j d -> b h i j', q, k) * self.scale
mask_value = -torch.finfo(dots.dtype).max
if mask is not None:
mask = F.pad(mask.flatten(1), (1, 0), value = True)
assert mask.shape[-1] == dots.shape[-1], 'mask has incorrect dimensions'
mask = rearrange(mask, 'b i -> b () i ()') * rearrange(mask, 'b j -> b () () j')
dots.masked_fill_(~mask, mask_value)
del mask
attn = dots.softmax(dim=-1)
out = einsum('b h i j, b h j d -> b h i d', attn, v)
out = rearrange(out, 'b h n d -> b n (h d)')
out = self.to_out(out)
return out
class Transformer(nn.Module):
def __init__(self, dim, depth, heads, dim_head, mlp_dim, dropout = 0.):
super().__init__()
self.layers = nn.ModuleList([])
for _ in range(depth):
self.layers.append(nn.ModuleList([
Residual(PreNorm(dim, Attention(dim, heads = heads, dim_head = dim_head, dropout = dropout))),
Residual(PreNorm(dim, FeedForward(dim, mlp_dim, dropout = dropout)))
]))
def forward(self, x, mask = None):
for attn, ff in self.layers:
x = attn(x, mask = mask)
x = ff(x)
return x
# =============================================================================
# Utility Functions
# =============================================================================
def valid_idx(idx, h):
i = idx // h
j = idx % h
if j == 0 or i == h - 1 or j == h - 1:
return False
else:
return True
# =============================================================================
# Patch Pooling Classes (Simplified for Inference)
# =============================================================================
class CenterPatchPool(nn.Module):
"""Simplified patch pooling for inference - always use center patch"""
def __init__(self):
super().__init__()
def forward(self, x):
# batch,channel,16,7x7
b, c, t, h, w = x.shape
x = x.reshape(b, c, t, h * w)
idx = h * w // 2 # Always use center patch for inference
x = x[..., idx]
return x
class CenterAvgPool(nn.Module):
"""Simplified average pooling for inference - use all valid patches"""
def __init__(self):
super().__init__()
def forward(self, x):
# batch,channel,16,7x7
b, c, t, h, w = x.shape
x = x.reshape(b, c, t, h * w)
candidates = list(range(h * w))
candidates = [idx for idx in candidates if valid_idx(idx, h)]
x = x[..., candidates].mean(-1)
return x
class CenterSelect(nn.Module):
"""Simplified selection for inference - use all valid patches"""
def __init__(self):
super().__init__()
def forward(self, x):
# batch,7x7
size = x.shape[1]
h = int(sqrt(size))
candidates = list(range(size))
candidates = [idx for idx in candidates if valid_idx(idx, h)]
x = x[:, candidates]
return x
# =============================================================================
# Vision Transformer Classes
# =============================================================================
# Removed ViT and VideoiT classes - not used in inference
# =============================================================================
# Specialized Transformer Classes
# =============================================================================
# SpatialTransformer class - used by SpatialTransformerE
class SpatialTransformer(nn.Module):
def __init__(self,num_patches, num_classes, dim, depth, heads, mlp_dim, pool = 'cls', dim_head = 64, dropout = 0., emb_dropout = 0.):
super().__init__()
self.dim =dim
self.num_patches=num_patches
self.pos_embedding = nn.Parameter(posemb_sincos_2d(14,14,dim))
self.cls_token = nn.Parameter(torch.randn(1, 1, dim))
self.dropout = nn.Dropout(emb_dropout)
self.fre_pos = nn.Parameter(torch.randn(1, 1, dim))
self.transformer = Transformer(1024, depth, heads, dim_head, mlp_dim, dropout)
self.pool = pool
self.to_latent = nn.Identity()
self.mlp_head = nn.Sequential(
nn.LayerNorm(1024), nn.Linear(1024, 1024)
)
self.freq_embedding = nn.Sequential(nn.LayerNorm(dim),nn.Linear(dim,dim))
self.cls_token_pos = nn.Parameter(torch.randn(1, 1, dim))
self.mlp_head_ste = nn.Linear(dim, 1)
def posemb_loc(self, locs,batch_size):
if locs is not None:
b,n,_ = locs.shape
pos224 =self.pos_embedding.view(14,14,-1)
pos_locs = torch.zeros(batch_size,n, self.dim)
if locs is not None:
# locs[locs>=1] = 0.999999
loc_x = torch.floor(locs[:,:,0]*6)
loc_y = torch.floor(locs[:,:,1]*6)
loc_x = loc_x.long()
loc_y = loc_y.long()
x_a = locs[:,:,0]*6 - loc_x
y_a = locs[:,:,0]*6 - loc_y
x1_a = torch.sqrt( torch.pow(1-x_a,2) + torch.pow(1-y_a,2))
x2_a = torch.sqrt( torch.pow(1-x_a,2) + torch.pow(y_a,2))
x3_a = torch.sqrt( torch.pow(x_a,2) + torch.pow(1-y_a,2))
x4_a = torch.sqrt( torch.pow(x_a,2) + torch.pow(y_a,2))
pos_locs[:, :, :] = pos224[loc_x,loc_y,:]*x1_a.unsqueeze(-1)\
+pos224[loc_x+1,loc_y,:]*x2_a.unsqueeze(-1)\
+pos224[loc_x,loc_y+1,:]*x3_a.unsqueeze(-1)\
+pos224[loc_x+1,loc_y+1,:]*x4_a.unsqueeze(-1)
return pos_locs
def forward(self, x,ft_feature,locs):
b, n, _ = x.shape #batch,num_patches,channels #
cls_tokens_pos = repeat(self.cls_token_pos, '() n d -> b n d', b = b)
cls_tokens = repeat(self.cls_token, '() n d -> b n d', b = b)
cls_tokens = cls_tokens+cls_tokens_pos
x += self.pos_embedding
if locs is not None:
posemb_loc = self.posemb_loc(locs,b).clone().detach()
if torch.cuda.is_available() and x.is_cuda:
posemb_loc = posemb_loc.cuda()
posemb_loc += self.fre_pos
ft_feature = ft_feature+posemb_loc
ft_feature = self.freq_embedding(ft_feature)
x = torch.cat((cls_tokens, x,ft_feature), dim=1)
else :
x = torch.cat((cls_tokens, x), dim=1)
x = self.dropout(x)
x = self.transformer(x, mask=None)
x = x.mean(dim = 1) if self.pool == 'mean' else x[:, 0]
x = self.to_latent(x)
x = self.mlp_head(x)
return x, self.mlp_head_ste(x.clone())
import torch
from torch import nn
import torch.nn.functional as F
from einops import repeat
def posemb_sincos_2d(h, w, dim, temperature: int = 10000, dtype=torch.float32):
assert (dim % 4) == 0, "dim must be multiple of 4"
y, x = torch.meshgrid(torch.arange(h), torch.arange(w), indexing="ij")
omega = torch.arange(dim // 4) / (dim // 4 - 1)
omega = 1.0 / (temperature ** omega)
y = y.flatten()[:, None] * omega[None, :]
x = x.flatten()[:, None] * omega[None, :]
pe = torch.cat((x.sin(), x.cos(), y.sin(), y.cos()), dim=1)
return pe.type(dtype)
class SpatialTransformer(nn.Module):
def __init__(self, num_patches, num_classes, dim, depth, heads, mlp_dim,
pool='cls', dim_head=64, dropout=0., emb_dropout=0.):
super().__init__()
self.dim = dim
self.num_patches = num_patches
self.register_buffer('pos_embedding', posemb_sincos_2d(14, 14, dim))
self.cls_token = nn.Parameter(torch.randn(1, 1, dim))
self.cls_token_pos = nn.Parameter(torch.randn(1, 1, dim))
self.fre_pos = nn.Parameter(torch.randn(1, 1, dim))
self.dropout = nn.Dropout(emb_dropout)
self.spatial_proj = nn.Linear(dim, dim)
self.freq_embedding = nn.Sequential(nn.LayerNorm(dim), nn.Linear(dim, dim))
self.transformer = Transformer(dim, depth, heads, dim_head, mlp_dim, dropout)
self.pool = pool
self.to_latent = nn.Identity()
# output ES ∈ R^1024
self.mlp_head = nn.Sequential(nn.LayerNorm(dim), nn.Linear(dim, 1024))
self.mlp_head_ste = nn.Linear(dim, 1)
@torch.no_grad()
def posemb_loc(self, locs, batch_size):
if locs is None:
return None
# locs: (B, P, 2) in [0,1]
B, P, _ = locs.shape
device, dtype = locs.device, locs.dtype
pos_grid = self.pos_embedding.view(14, 14, self.dim).to(device) # (14,14,dim) - already [196, dim]
S = 13.0
x_f = (locs[:, :, 0] * S).clamp(0, 13 - 1e-6)
y_f = (locs[:, :, 1] * S).clamp(0, 13 - 1e-6)
ix = torch.floor(x_f).long().clamp(0, 12)
iy = torch.floor(y_f).long().clamp(0, 12)
ix1 = (ix + 1).clamp(max=13)
iy1 = (iy + 1).clamp(max=13)
x_a = (x_f - ix).to(dtype) # frac
y_a = (y_f - iy).to(dtype)
w11 = (1 - x_a) * (1 - y_a)
w12 = x_a * (1 - y_a)
w21 = (1 - x_a) * y_a
w22 = x_a * y_a
p11 = pos_grid[ix, iy, :] # (B,P,dim) via advanced indexing
p12 = pos_grid[ix1, iy, :]
p21 = pos_grid[ix, iy1, :]
p22 = pos_grid[ix1, iy1, :]
pos_locs = (p11 * w11.unsqueeze(-1) +
p12 * w12.unsqueeze(-1) +
p21 * w21.unsqueeze(-1) +
p22 * w22.unsqueeze(-1)) # (B,P,dim)
return pos_locs
def forward(self, x, ft_feature, locs):
# x: (B, N=14*14, dim), ft_feature: (B, P, dim), locs: (B, P, 2)
B, N, _ = x.shape
# cls token (+ pos)
cls_tokens = repeat(self.cls_token, '() n d -> b n d', b=B)
cls_tokens_pos = repeat(self.cls_token_pos, '() n d -> b n d', b=B)
cls_tokens = cls_tokens + cls_tokens_pos
# Wsp z_sp + pos_sp
x = self.spatial_proj(x)
x = x + self.pos_embedding.unsqueeze(0).to(x.device)
# part tokens: Wfreq Z_p + (interp(pos_sp) + pos_freq)
if locs is not None and ft_feature is not None:
pospart = self.posemb_loc(locs, B) # (B,P,dim)
if pospart is not None:
pospart = pospart + self.fre_pos # + posfreq
ft_feature = self.freq_embedding(ft_feature) # Wfreq
if pospart is not None:
ft_feature = ft_feature + pospart
tokens = torch.cat((cls_tokens, x, ft_feature), dim=1)
else:
tokens = torch.cat((cls_tokens, x), dim=1)
tokens = self.dropout(tokens)
tokens = self.transformer(tokens, mask=None)
out = tokens.mean(dim=1) if self.pool == 'mean' else tokens[:, 0]
out = self.to_latent(out)
es = self.mlp_head(out) # ES ∈ R^1024
ste_score = self.mlp_head_ste(out) # optional head
return es, ste_score
class TimeTransformer(nn.Module):
def __init__(self,num_patches, num_classes, dim, depth, heads, mlp_dim, pool = 'cls', dim_head = 64, dropout = 0., emb_dropout = 0.):
super().__init__()
assert pool in {'cls', 'mean'}, 'pool type must be either cls (cls token) or mean (mean pooling)'
self.num_patches=num_patches
self.pos_embedding = nn.Parameter(torch.randn(1, num_patches + 1, dim))
self.cls_token = nn.Parameter(torch.randn(1, 1, dim))
self.dropout = nn.Dropout(emb_dropout)
self.transformer = Transformer(dim, depth, heads, dim_head, mlp_dim, dropout)
self.freq_embedding = nn.Sequential(nn.LayerNorm(dim),nn.Linear(dim,dim))
self.pool = pool
self.to_latent = nn.Identity()
self.LN = nn.LayerNorm(dim)
def forward(self, x,ft_t):
b, n, _ = x.shape #batch,num_patches,channels #
cls_tokens = repeat(self.cls_token, '() n d -> b n d', b = b)
ft_t = self.freq_embedding(ft_t)
x +=ft_t.unsqueeze(1)
x = torch.cat((cls_tokens, x), dim=1)
x += self.pos_embedding[:, :(n + 1)]
# x = torch.cat((x,ft_t), dim=1)
x = self.dropout(x)
x = self.transformer(x, mask=None)
x = x.mean(dim = 1) if self.pool == 'mean' else x[:, 0]
x = self.to_latent(x)
x = self.LN(x)
return x, None
# =============================================================================
# FTCN-specific Transformer Classes
# =============================================================================
class SpatialTransformerE(nn.Module):
def __init__(self, spatial_size=14, time_size = 16, in_channels = 1024, num_parts=5):
super().__init__()
self.num_parts = num_parts
self.in_channels = in_channels
default_params= dict(
dim=self.in_channels, depth=1, heads=16, mlp_dim=2048, dropout=0.1, emb_dropout=0.1,
num_patches = spatial_size ** 2, num_classes = 1
)
self.num_patches = spatial_size ** 2
self.freq_embedding = nn.Linear(2048,1024)
self.freq_embedding.weight.data.normal_(mean=0.0, std=0.02)
self.freq_embedding.bias.data.zero_()
self.pool = nn.AvgPool3d((time_size, 1, 1))
self.spatial_T = SpatialTransformer( **default_params )
def forward(self, x, ft, locs):
batch_size = x.shape[0]
x = self.pool(x)
if self.num_parts > 0:
ft = self.freq_embedding(ft.reshape(batch_size*self.num_parts,2048))
ft = ft.view(batch_size,self.num_parts,1024)
locs = locs.reshape(-1, self.num_parts, 2)
x = x.view(batch_size,self.num_patches,1024)
x = self.spatial_T(x,ft,locs)
return x
class TransformerHead(nn.Module):
def __init__(self, spatial_size=7, time_size=16, in_channels=1024, num_parts=5):
super().__init__()
if my_cfg.model.inco.no_time_pool:
time_size = time_size * 2
patch_type = my_cfg.model.transformer.patch_type # time
if patch_type == "time":
self.pool = nn.AvgPool3d((1, spatial_size, spatial_size))
self.num_patches = time_size
elif patch_type == "spatial":
self.pool = nn.AvgPool3d((time_size, 1, 1))
self.num_patches = spatial_size ** 2
elif patch_type == "random":
self.pool = CenterPatchPool()
self.num_patches = time_size
elif patch_type == "random_avg":
self.pool = CenterAvgPool()
self.num_patches = time_size
elif patch_type == "all":
self.pool = nn.Identity()
self.num_patches = time_size * spatial_size * spatial_size
else:
raise NotImplementedError(patch_type)
self.dim = my_cfg.model.transformer.dim # False
if self.dim == -1:
self.dim = in_channels # 2048
my_cfg.model.transformer.dim = self.dim
self.in_channels = in_channels
if self.dim != self.in_channels:
self.fc = nn.Linear(self.in_channels, self.dim)
default_params = dict(
dim=self.dim, depth=6, heads=16, mlp_dim=2048, dropout=0.1, emb_dropout=0.1,
)
params = my_cfg.model.transformer.to_dict()
for key in default_params:
if key in params:
default_params[key] = params[key]
self.time_T = TimeTransformer(
num_patches=self.num_patches, num_classes=1, **default_params
)
self.sigmoid = nn.Sigmoid()
def forward(self, x,ft_t):
x = self.pool(x)
x = x.reshape(-1, self.in_channels, self.num_patches)
x = x.permute(0, 2, 1)
if self.dim != self.in_channels:
x = self.fc(x.reshape(-1, self.in_channels))
x = x.reshape(-1, self.num_patches, self.dim)
x = self.time_T(x,ft_t)
return x |