Safetensors
PyTorch
Transformers
custom
peptedgev2
biology
bioinformatics
peptides
protein
antimicrobial-peptide
amp
protein-sequence
sequence-classification
Eval Results (legacy)
Instructions to use devansh0703/PeptEdgeV2 with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use devansh0703/PeptEdgeV2 with Transformers:
# pip install -U transformers accelerate # Load model directly from transformers import PeptEdgeV2 model = PeptEdgeV2.from_pretrained("devansh0703/PeptEdgeV2", device_map="auto") - Notebooks
- Google Colab
- Kaggle
Link HF dataset (devansh0703/GenPept-Curated-2025) + add dataset citation/license
Browse files
README.md
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type: text-classification
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name: Antimicrobial Peptide (AMP) Binary Classification
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dataset:
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type: GenPept-Curated-2025
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name: GenPept-Curated-2025 (balanced_11000)
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split: test
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metrics:
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## Dataset
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Trained on the
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- 11,000 peptide sequences (5,500 AMP / 5,500 non-AMP)
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- Sequence lengths 10–200 amino acids
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- Taxonomy: Bacteria, Archaea, Fungi
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## Citation
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```bibtex
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@article{peptedgev2,
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title={PeptEdgeV2: A Parameter-Efficient Multi-Scale Hybrid Architecture for Antimicrobial Peptide Classification},
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}
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```
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## License
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MIT
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type: text-classification
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name: Antimicrobial Peptide (AMP) Binary Classification
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dataset:
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type: devansh0703/GenPept-Curated-2025
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id: devansh0703/GenPept-Curated-2025
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name: GenPept-Curated-2025 (balanced_11000)
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split: test
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metrics:
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## Dataset
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Trained on the **GenPept-Curated-2025** benchmark. The curated tables are mirrored on the Hub as a
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dataset repo:
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- **HF dataset:** [devansh0703/GenPept-Curated-2025](https://huggingface.co/datasets/devansh0703/GenPept-Curated-2025)
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- **Original source:** https://github.com/biochem-data-sci/GenPept-Curated-2025
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- **Paper (bioRxiv):** https://doi.org/10.64898/2026.04.25.720793
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- **License:** CC-BY-NC 4.0 (dataset belongs to its original authors — see dataset card)
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Dataset summary:
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- 11,000 peptide sequences (5,500 AMP / 5,500 non-AMP)
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- Sequence lengths 10–200 amino acids
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- Taxonomy: Bacteria, Archaea, Fungi
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## Citation
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If you use this model, cite the model:
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```bibtex
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@article{peptedgev2,
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title={PeptEdgeV2: A Parameter-Efficient Multi-Scale Hybrid Architecture for Antimicrobial Peptide Classification},
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}
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```
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If you use the dataset, cite its original authors:
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```bibtex
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@article{Pham2026GenPeptCurated2025,
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title={GenPept-Curated-2025: A Benchmark Dataset for Antimicrobial Peptide Prediction with Homology-Controlled Partitioning},
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author={Huynh Trong Pham and Bao Huynh and Thanh-Hoang Nguyen-Vo},
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journal={bioRxiv},
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year={2026},
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doi={10.64898/2026.04.25.720793}
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}
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```
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## License
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MIT
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