sync: runs/exp_oracle_ds_7cell_100k_20260424_003143/metrics.json
Browse files
runs/exp_oracle_ds_7cell_100k_20260424_003143/metrics.json
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{
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"best_val_pearson_mean": 0.32036450505256653,
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"val_mse": 0.10824030174722477,
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"val_pearson_mean": 0.32036450505256653,
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"val_spearman_mean": 0.15228281915187836,
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"val_pearson_per_cell": [
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0.23956380784511566,
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0.2181856781244278,
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0.1609852910041809,
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0.4852559566497803,
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0.1890462040901184,
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0.17005324363708496,
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0.7794613838195801
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],
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"val_spearman_per_cell": [
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0.14280059933662415,
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0.12914180755615234,
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0.08742377907037735,
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0.1983763426542282,
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0.11841922998428345,
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0.1035899892449379,
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0.2862279415130615
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],
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"config": {
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"oracle": "deepstarr_7cell",
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"cell_types": [
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"Ex",
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"In",
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"OPC",
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"Ast",
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"Oli",
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"Mic",
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"End"
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],
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"input_length": 512,
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"epochs": 10,
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"batch_size": 256,
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"learning_rate": 0.002,
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"weight_decay": 0.0001,
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"val_fraction": 0.1,
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"seed": 1234,
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"early_stop_patience": 10,
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| 43 |
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"output_dir": "/extra/zhanglab0/INDV/pengchx3/regureasoner_loop/runs/exp_oracle_ds_7cell_100k_20260424_003143",
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"device": "cuda",
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| 45 |
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"num_workers": 0,
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| 46 |
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"deepstarr_fc_dim": 256,
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| 47 |
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"deepstarr_conv_channels": [
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256,
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60,
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60,
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120
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],
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"deepstarr_conv_kernels": [
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7,
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3,
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5,
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3
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],
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"deepstarr_pool_kernels": [
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3,
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3,
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3,
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3
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],
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"deepstarr_dropout": 0.4,
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| 66 |
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"enformer_backbone_name": "EleutherAI/enformer-official-rough",
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| 67 |
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"enformer_embed_dim": 3072,
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| 68 |
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"enformer_input_length": 196608,
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| 69 |
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"sei_backbone_name": "FunSei",
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| 70 |
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"sei_embed_dim": 1024,
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| 71 |
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"sei_input_length": 4096
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| 72 |
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}
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| 73 |
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}
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