oracle v2 FDR-only: metrics.json
Browse files
runs/exp_oracle_v2_fdr_only_h100/metrics.json
ADDED
|
@@ -0,0 +1,77 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"best_val_pearson_mean": 0.20035068690776825,
|
| 3 |
+
"val_mse": 118.92063247005713,
|
| 4 |
+
"val_pearson_mean": 0.20035068690776825,
|
| 5 |
+
"val_spearman_mean": 0.13522176444530487,
|
| 6 |
+
"val_pearson_per_cell": [
|
| 7 |
+
0.34732764959335327,
|
| 8 |
+
0.13301433622837067,
|
| 9 |
+
0.12120114266872406,
|
| 10 |
+
0.1172836497426033,
|
| 11 |
+
0.25788310170173645,
|
| 12 |
+
0.38333186507225037,
|
| 13 |
+
0.042413048446178436
|
| 14 |
+
],
|
| 15 |
+
"val_spearman_per_cell": [
|
| 16 |
+
0.29517751932144165,
|
| 17 |
+
0.0760946199297905,
|
| 18 |
+
0.08790204674005508,
|
| 19 |
+
0.10083145648241043,
|
| 20 |
+
0.1377669870853424,
|
| 21 |
+
0.23689420521259308,
|
| 22 |
+
0.011885508894920349
|
| 23 |
+
],
|
| 24 |
+
"config": {
|
| 25 |
+
"oracle": "deepstarr_7cell",
|
| 26 |
+
"cell_types": [
|
| 27 |
+
"Ex",
|
| 28 |
+
"In",
|
| 29 |
+
"OPC",
|
| 30 |
+
"Ast",
|
| 31 |
+
"Oli",
|
| 32 |
+
"Mic",
|
| 33 |
+
"End"
|
| 34 |
+
],
|
| 35 |
+
"input_length": 600,
|
| 36 |
+
"epochs": 200,
|
| 37 |
+
"batch_size": 128,
|
| 38 |
+
"learning_rate": 0.002,
|
| 39 |
+
"weight_decay": 0.0001,
|
| 40 |
+
"val_fraction": 0.05,
|
| 41 |
+
"seed": 1234,
|
| 42 |
+
"early_stop_patience": 20,
|
| 43 |
+
"output_dir": "/dev/shm/dnathinker/runs/exp_oracle_v2_fdr_only_h100",
|
| 44 |
+
"device": "cuda",
|
| 45 |
+
"num_workers": 0,
|
| 46 |
+
"deepstarr_fc_dim": 256,
|
| 47 |
+
"deepstarr_conv_channels": [
|
| 48 |
+
256,
|
| 49 |
+
60,
|
| 50 |
+
60,
|
| 51 |
+
120
|
| 52 |
+
],
|
| 53 |
+
"deepstarr_conv_kernels": [
|
| 54 |
+
7,
|
| 55 |
+
3,
|
| 56 |
+
5,
|
| 57 |
+
3
|
| 58 |
+
],
|
| 59 |
+
"deepstarr_pool_kernels": [
|
| 60 |
+
3,
|
| 61 |
+
3,
|
| 62 |
+
3,
|
| 63 |
+
3
|
| 64 |
+
],
|
| 65 |
+
"deepstarr_dropout": 0.4,
|
| 66 |
+
"enformer_backbone_name": "EleutherAI/enformer-official-rough",
|
| 67 |
+
"enformer_embed_dim": 3072,
|
| 68 |
+
"enformer_input_length": 196608,
|
| 69 |
+
"hyenadna_backbone_name": "LongSafari/hyenadna-tiny-1k-seqlen-hf",
|
| 70 |
+
"hyenadna_embed_dim": 128,
|
| 71 |
+
"hyenadna_input_length": 1000,
|
| 72 |
+
"hyenadna_dtype": "float32",
|
| 73 |
+
"sei_backbone_name": "FunSei",
|
| 74 |
+
"sei_embed_dim": 1024,
|
| 75 |
+
"sei_input_length": 4096
|
| 76 |
+
}
|
| 77 |
+
}
|