Upload cycle_70_lab_L0/exp_rl_pathb_650m_FULL_AUDIT_dapo_20260506_125418/motif_score_postRL_multinom_t1.5_AUDIT.md with huggingface_hub
Browse files
cycle_70_lab_L0/exp_rl_pathb_650m_FULL_AUDIT_dapo_20260506_125418/motif_score_postRL_multinom_t1.5_AUDIT.md
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# T3 enhancer-editing motif scoring
|
| 2 |
+
|
| 3 |
+
**Predictions**: `/extra/zhanglab0/INDV/pengchx3/regureasoner_loop/runs/exp_rl_pathb_650m_FULL_AUDIT_dapo_20260506_125418/predict_test_n200_postRL_multinom_t1.5.jsonl`
|
| 4 |
+
**Gold**: `/extra/zhanglab0/INDV/pengchx3/regureasoner_loop/data/oracle_filtered_t3/test.enhancer_editing.strat7c.n7k.oracle_filtered_top1.jsonl`
|
| 5 |
+
**N**: 200, parse_rate=1.000
|
| 6 |
+
|
| 7 |
+
## Headline
|
| 8 |
+
|
| 9 |
+
| Metric | Value |
|
| 10 |
+
|---|---:|
|
| 11 |
+
| Mean predicted motif hits / seq | **0.240** |
|
| 12 |
+
| Mean gold motif hits / seq | 0.655 |
|
| 13 |
+
| Pred / Gold ratio | 0.366 |
|
| 14 |
+
| Target-TF motif hit rate | **0.025** (5/200) |
|
| 15 |
+
| Mean predicted GC | 0.220 (gold: 0.529) |
|
| 16 |
+
| Shuffle-null baseline (n=10) | 0.655 |
|
| 17 |
+
| **Enrichment (pred / null)** | **0.366** |
|
| 18 |
+
| Motif length filter | ≥6 bp |
|
| 19 |
+
|
| 20 |
+
## Per-cell
|
| 21 |
+
|
| 22 |
+
| Cell | N | Pred | Null | Enrichment | Gold | Pred GC | Gold GC |
|
| 23 |
+
|---|---:|---:|---:|---:|---:|---:|---:|
|
| 24 |
+
| Mic | 44 | 0.250 | 0.693 | 0.361 | 1.136 | 0.187 | 0.546 |
|
| 25 |
+
| In | 25 | 1.400 | 3.436 | 0.407 | 0.280 | 0.234 | 0.518 |
|
| 26 |
+
| Ex | 48 | 0.021 | 0.025 | 0.833 | 0.729 | 0.171 | 0.492 |
|
| 27 |
+
| End | 8 | 0.000 | 0.000 | 0.000 | 0.000 | 0.357 | 0.534 |
|
| 28 |
+
| OPC | 17 | 0.000 | 0.176 | 0.000 | 1.118 | 0.314 | 0.559 |
|
| 29 |
+
| Ast | 26 | 0.000 | 0.138 | 0.000 | 0.154 | 0.286 | 0.549 |
|
| 30 |
+
| Oli | 32 | 0.031 | 0.216 | 0.145 | 0.500 | 0.192 | 0.535 |
|