ALADIN / 3_lead_model /plans.json
Lukas Arts
Upload folder using huggingface_hub
c0c4fc6 verified
Raw History Blame Contribute Delete
70.6 kB
{
"dataset_name": "Dataset201_all_101",
"plans_name": "nnUNetWithClassificationPlans",
"original_median_spacing_after_transp": [
999.0,
999.0,
1.0
],
"original_median_shape_after_transp": [
1,
1,
2048
],
"image_reader_writer": "NumpyIO",
"transpose_forward": [
0,
1,
2
],
"transpose_backward": [
0,
1,
2
],
"configurations": {
"1d_encoding": {
"data_identifier": "nnUNetWithClassificationPlans_1d",
"preprocessor_name": "WithClassificationPreprocessor",
"batch_size": 141,
"patch_size": [
2048,
2048,
2048
],
"median_image_size_in_voxels": [
2048.0,
2048.0,
2048.0
],
"spacing": [
1.0,
1.0,
1.0
],
"normalization_schemes": [
"ZScoreNormalization",
"ZScoreNormalization",
"ZScoreNormalization"
],
"use_mask_for_norm": [
false,
false,
false
],
"resampling_fn_data": "resample_data_or_seg_to_shape",
"resampling_fn_seg": "resample_data_or_seg_to_shape",
"resampling_fn_data_kwargs": {
"is_seg": false,
"order": 3,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_seg_kwargs": {
"is_seg": true,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_probabilities": "resample_data_or_seg_to_shape",
"resampling_fn_probabilities_kwargs": {
"is_seg": false,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"architecture": {
"network_class_name": "nnunetv2.models.custom_architectures.UNetWithClassificationBranches",
"arch_kwargs": {
"n_stages": 6,
"features_per_stage": [
64,
128,
256,
512,
1024,
2048
],
"conv_op": "torch.nn.modules.conv.Conv1d",
"kernel_sizes": [
[
5
],
[
5
],
[
5
],
[
5
],
[
5
],
[
5
]
],
"strides": [
[
1
],
[
2
],
[
2
],
[
2
],
[
2
],
[
2
]
],
"n_conv_per_stage": [
2,
2,
2,
2,
2,
2
],
"n_conv_per_stage_decoder": [
2,
2,
2,
2,
2
],
"conv_bias": true,
"num_classes_classification_branch": [
2,
2
],
"features_per_stage_classification_branch": [
[
512
],
[
512
]
],
"kernel_sizes_classification_branch": [
[
17
],
[
17
]
],
"strides_classification_branch": [
[
2
],
[
2
]
],
"norm_op": "torch.nn.modules.instancenorm.InstanceNorm1d",
"norm_op_kwargs": {
"eps": 1e-05,
"affine": true
},
"dropout_op": null,
"dropout_op_kwargs": null,
"nonlin": "torch.nn.LeakyReLU",
"nonlin_kwargs": {
"inplace": true
}
},
"_kw_requires_import": [
"conv_op",
"norm_op",
"dropout_op",
"nonlin"
]
},
"batch_dice": true
},
"1d_decoding": {
"data_identifier": "nnUNetWithClassificationPlans_1d",
"preprocessor_name": "WithClassificationPreprocessor",
"batch_size": 141,
"patch_size": [
2048
],
"median_image_size_in_voxels": [
2048.0
],
"spacing": [
1.0
],
"normalization_schemes": [
"ZScoreNormalization",
"ZScoreNormalization",
"ZScoreNormalization"
],
"use_mask_for_norm": [
false,
false,
false
],
"resampling_fn_data": "resample_data_or_seg_to_shape",
"resampling_fn_seg": "resample_data_or_seg_to_shape",
"resampling_fn_data_kwargs": {
"is_seg": false,
"order": 3,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_seg_kwargs": {
"is_seg": true,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_probabilities": "resample_data_or_seg_to_shape",
"resampling_fn_probabilities_kwargs": {
"is_seg": false,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"architecture": {
"network_class_name": "nnunetv2.models.custom_architectures.UNetWithClassificationBranches",
"arch_kwargs": {
"n_stages": 6,
"features_per_stage": [
64,
128,
256,
512,
1024,
2048
],
"conv_op": "torch.nn.modules.conv.Conv1d",
"kernel_sizes": [
[
5
],
[
5
],
[
5
],
[
5
],
[
5
],
[
5
]
],
"strides": [
[
1
],
[
2
],
[
2
],
[
2
],
[
2
],
[
2
]
],
"n_conv_per_stage": [
2,
2,
2,
2,
2,
2
],
"n_conv_per_stage_decoder": [
2,
2,
2,
2,
2
],
"conv_bias": true,
"use_encoding_layers_classification_branch": false,
"use_decoding_layers_classification_branch": true,
"num_classes_classification_branch": [
2,
2
],
"features_per_stage_classification_branch": [
[
512
],
[
512
]
],
"kernel_sizes_classification_branch": [
[
17
],
[
17
]
],
"strides_classification_branch": [
[
2
],
[
2
]
],
"norm_op": "torch.nn.modules.instancenorm.InstanceNorm1d",
"norm_op_kwargs": {
"eps": 1e-05,
"affine": true
},
"dropout_op": null,
"dropout_op_kwargs": null,
"nonlin": "torch.nn.LeakyReLU",
"nonlin_kwargs": {
"inplace": true
}
},
"_kw_requires_import": [
"conv_op",
"norm_op",
"dropout_op",
"nonlin"
]
},
"batch_dice": true
},
"1d_2": {
"data_identifier": "nnUNetWithClassificationPlans_1d",
"preprocessor_name": "WithClassificationPreprocessor",
"batch_size": 1024,
"patch_size": [
2048,
2048,
2048
],
"median_image_size_in_voxels": [
2048.0,
2048.0,
2048.0
],
"spacing": [
1.0,
1.0,
1.0
],
"normalization_schemes": [
"ZScoreNormalization",
"ZScoreNormalization",
"ZScoreNormalization"
],
"use_mask_for_norm": [
false,
false,
false
],
"resampling_fn_data": "resample_data_or_seg_to_shape",
"resampling_fn_seg": "resample_data_or_seg_to_shape",
"resampling_fn_data_kwargs": {
"is_seg": false,
"order": 3,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_seg_kwargs": {
"is_seg": true,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_probabilities": "resample_data_or_seg_to_shape",
"resampling_fn_probabilities_kwargs": {
"is_seg": false,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"architecture": {
"network_class_name": "nnunetv2.models.custom_architectures.UNetWithClassificationBranches",
"arch_kwargs": {
"n_stages": 6,
"features_per_stage": [
64,
128,
256,
512,
1024,
2048
],
"conv_op": "torch.nn.modules.conv.Conv1d",
"kernel_sizes": [
[
7
],
[
7
],
[
7
],
[
7
],
[
7
],
[
7
]
],
"strides": [
[
1
],
[
2
],
[
2
],
[
2
],
[
2
],
[
2
]
],
"n_conv_per_stage": [
2,
2,
2,
2,
2,
2
],
"n_conv_per_stage_decoder": [
2,
2,
2,
2,
2
],
"conv_bias": true,
"num_classes_classification_branch": [
2,
2
],
"features_per_stage_classification_branch": [
[
512,
256,
128
],
[
512,
256,
128
]
],
"kernel_sizes_classification_branch": [
[
7,
7,
7
],
[
7,
7,
7
]
],
"strides_classification_branch": [
[
2,
2,
2
],
[
2,
2,
2
]
],
"norm_op": "torch.nn.modules.instancenorm.InstanceNorm1d",
"norm_op_kwargs": {
"eps": 1e-05,
"affine": true
},
"dropout_op": null,
"dropout_op_kwargs": null,
"nonlin": "torch.nn.LeakyReLU",
"nonlin_kwargs": {
"inplace": true
}
},
"_kw_requires_import": [
"conv_op",
"norm_op",
"dropout_op",
"nonlin"
]
},
"batch_dice": true
},
"1d_small_encoding": {
"data_identifier": "nnUNetWithClassificationPlans_1d",
"preprocessor_name": "WithClassificationPreprocessor",
"batch_size": 141,
"patch_size": [
2048,
2048,
2048
],
"median_image_size_in_voxels": [
2048.0,
2048.0,
2048.0
],
"spacing": [
1.0,
1.0,
1.0
],
"normalization_schemes": [
"ZScoreNormalization",
"ZScoreNormalization",
"ZScoreNormalization"
],
"use_mask_for_norm": [
false,
false,
false
],
"resampling_fn_data": "resample_data_or_seg_to_shape",
"resampling_fn_seg": "resample_data_or_seg_to_shape",
"resampling_fn_data_kwargs": {
"is_seg": false,
"order": 3,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_seg_kwargs": {
"is_seg": true,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_probabilities": "resample_data_or_seg_to_shape",
"resampling_fn_probabilities_kwargs": {
"is_seg": false,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"architecture": {
"network_class_name": "nnunetv2.models.custom_architectures.UNetWithClassificationBranches",
"arch_kwargs": {
"n_stages": 5,
"features_per_stage": [
64,
128,
256,
512,
1024
],
"conv_op": "torch.nn.modules.conv.Conv1d",
"kernel_sizes": [
[
7
],
[
7
],
[
7
],
[
7
],
[
7
]
],
"strides": [
[
1
],
[
2
],
[
2
],
[
2
],
[
2
]
],
"n_conv_per_stage": [
2,
2,
2,
2,
2
],
"n_conv_per_stage_decoder": [
2,
2,
2,
2
],
"conv_bias": true,
"use_encoding_layers_classification_branch": true,
"use_decoding_layers_classification_branch": false,
"num_classes_classification_branch": [
2,
2
],
"features_per_stage_classification_branch": [
[
512
],
[
512
]
],
"kernel_sizes_classification_branch": [
[
17
],
[
17
]
],
"strides_classification_branch": [
[
2
],
[
2
]
],
"norm_op": "torch.nn.modules.instancenorm.InstanceNorm1d",
"norm_op_kwargs": {
"eps": 1e-05,
"affine": true
},
"dropout_op": null,
"dropout_op_kwargs": null,
"nonlin": "torch.nn.LeakyReLU",
"nonlin_kwargs": {
"inplace": true
}
},
"_kw_requires_import": [
"conv_op",
"norm_op",
"dropout_op",
"nonlin"
]
},
"batch_dice": true
},
"1d_small_encoding_decoding": {
"data_identifier": "nnUNetWithClassificationPlans_1d",
"preprocessor_name": "WithClassificationPreprocessor",
"batch_size": 141,
"patch_size": [
2048,
2048,
2048
],
"median_image_size_in_voxels": [
2048.0,
2048.0,
2048.0
],
"spacing": [
1.0,
1.0,
1.0
],
"normalization_schemes": [
"ZScoreNormalization",
"ZScoreNormalization",
"ZScoreNormalization"
],
"use_mask_for_norm": [
false,
false,
false
],
"resampling_fn_data": "resample_data_or_seg_to_shape",
"resampling_fn_seg": "resample_data_or_seg_to_shape",
"resampling_fn_data_kwargs": {
"is_seg": false,
"order": 3,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_seg_kwargs": {
"is_seg": true,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_probabilities": "resample_data_or_seg_to_shape",
"resampling_fn_probabilities_kwargs": {
"is_seg": false,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"architecture": {
"network_class_name": "nnunetv2.models.custom_architectures.UNetWithClassificationBranches",
"arch_kwargs": {
"n_stages": 5,
"features_per_stage": [
64,
128,
256,
512,
1024
],
"conv_op": "torch.nn.modules.conv.Conv1d",
"kernel_sizes": [
[
7
],
[
7
],
[
7
],
[
7
],
[
7
]
],
"strides": [
[
1
],
[
2
],
[
2
],
[
2
],
[
2
]
],
"n_conv_per_stage": [
2,
2,
2,
2,
2
],
"n_conv_per_stage_decoder": [
2,
2,
2,
2
],
"conv_bias": true,
"use_encoding_layers_classification_branch": true,
"use_decoding_layers_classification_branch": true,
"num_classes_classification_branch": [
2,
2
],
"features_per_stage_classification_branch": [
[
512
],
[
512
]
],
"kernel_sizes_classification_branch": [
[
17
],
[
17
]
],
"strides_classification_branch": [
[
2
],
[
2
]
],
"norm_op": "torch.nn.modules.instancenorm.InstanceNorm1d",
"norm_op_kwargs": {
"eps": 1e-05,
"affine": true
},
"dropout_op": null,
"dropout_op_kwargs": null,
"nonlin": "torch.nn.LeakyReLU",
"nonlin_kwargs": {
"inplace": true
}
},
"_kw_requires_import": [
"conv_op",
"norm_op",
"dropout_op",
"nonlin"
]
},
"batch_dice": true
},
"1d_small_decoding": {
"data_identifier": "nnUNetWithClassificationPlans_1d",
"preprocessor_name": "WithClassificationPreprocessor",
"batch_size": 141,
"patch_size": [
2048,
2048,
2048
],
"median_image_size_in_voxels": [
2048.0,
2048.0,
2048.0
],
"spacing": [
1.0,
1.0,
1.0
],
"normalization_schemes": [
"ZScoreNormalization",
"ZScoreNormalization",
"ZScoreNormalization"
],
"use_mask_for_norm": [
false,
false,
false
],
"resampling_fn_data": "resample_data_or_seg_to_shape",
"resampling_fn_seg": "resample_data_or_seg_to_shape",
"resampling_fn_data_kwargs": {
"is_seg": false,
"order": 3,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_seg_kwargs": {
"is_seg": true,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_probabilities": "resample_data_or_seg_to_shape",
"resampling_fn_probabilities_kwargs": {
"is_seg": false,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"architecture": {
"network_class_name": "nnunetv2.models.custom_architectures.UNetWithClassificationBranches",
"arch_kwargs": {
"n_stages": 5,
"features_per_stage": [
64,
128,
256,
512,
1024
],
"conv_op": "torch.nn.modules.conv.Conv1d",
"kernel_sizes": [
[
7
],
[
7
],
[
7
],
[
7
],
[
7
]
],
"strides": [
[
1
],
[
2
],
[
2
],
[
2
],
[
2
]
],
"n_conv_per_stage": [
2,
2,
2,
2,
2
],
"n_conv_per_stage_decoder": [
2,
2,
2,
2
],
"conv_bias": true,
"use_encoding_layers_classification_branch": false,
"use_decoding_layers_classification_branch": true,
"num_classes_classification_branch": [
2,
2
],
"features_per_stage_classification_branch": [
[
512
],
[
512
]
],
"kernel_sizes_classification_branch": [
[
17
],
[
17
]
],
"strides_classification_branch": [
[
2
],
[
2
]
],
"norm_op": "torch.nn.modules.instancenorm.InstanceNorm1d",
"norm_op_kwargs": {
"eps": 1e-05,
"affine": true
},
"dropout_op": null,
"dropout_op_kwargs": null,
"nonlin": "torch.nn.LeakyReLU",
"nonlin_kwargs": {
"inplace": true
}
},
"_kw_requires_import": [
"conv_op",
"norm_op",
"dropout_op",
"nonlin"
]
},
"batch_dice": true
},
"1d_tiny_encoding": {
"data_identifier": "nnUNetWithClassificationPlans_1d",
"preprocessor_name": "WithClassificationPreprocessor",
"batch_size": 141,
"patch_size": [
2048,
2048,
2048
],
"median_image_size_in_voxels": [
2048.0,
2048.0,
2048.0
],
"spacing": [
1.0,
1.0,
1.0
],
"normalization_schemes": [
"ZScoreNormalization",
"ZScoreNormalization",
"ZScoreNormalization"
],
"use_mask_for_norm": [
false,
false,
false
],
"resampling_fn_data": "resample_data_or_seg_to_shape",
"resampling_fn_seg": "resample_data_or_seg_to_shape",
"resampling_fn_data_kwargs": {
"is_seg": false,
"order": 3,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_seg_kwargs": {
"is_seg": true,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_probabilities": "resample_data_or_seg_to_shape",
"resampling_fn_probabilities_kwargs": {
"is_seg": false,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"architecture": {
"network_class_name": "nnunetv2.models.custom_architectures.UNetWithClassificationBranches",
"arch_kwargs": {
"n_stages": 5,
"features_per_stage": [
32,
64,
128,
256,
512
],
"conv_op": "torch.nn.modules.conv.Conv1d",
"kernel_sizes": [
[
9
],
[
9
],
[
9
],
[
9
],
[
9
]
],
"strides": [
[
1
],
[
2
],
[
2
],
[
2
],
[
2
]
],
"n_conv_per_stage": [
2,
2,
2,
2,
2
],
"n_conv_per_stage_decoder": [
2,
2,
2,
2
],
"conv_bias": true,
"num_classes_classification_branch": [
2,
2
],
"features_per_stage_classification_branch": [
[
512
],
[
512
]
],
"kernel_sizes_classification_branch": [
[
17
],
[
17
]
],
"strides_classification_branch": [
[
2
],
[
2
]
],
"norm_op": "torch.nn.modules.instancenorm.InstanceNorm1d",
"norm_op_kwargs": {
"eps": 1e-05,
"affine": true
},
"dropout_op": null,
"dropout_op_kwargs": null,
"nonlin": "torch.nn.LeakyReLU",
"nonlin_kwargs": {
"inplace": true
}
},
"_kw_requires_import": [
"conv_op",
"norm_op",
"dropout_op",
"nonlin"
]
},
"batch_dice": true
},
"1d_tiny_encoding_2": {
"data_identifier": "nnUNetWithClassificationPlans_1d",
"preprocessor_name": "WithClassificationPreprocessor",
"batch_size": 141,
"patch_size": [
2048,
2048,
2048
],
"median_image_size_in_voxels": [
2048.0,
2048.0,
2048.0
],
"spacing": [
1.0,
1.0,
1.0
],
"normalization_schemes": [
"ZScoreNormalization",
"ZScoreNormalization",
"ZScoreNormalization"
],
"use_mask_for_norm": [
false,
false,
false
],
"resampling_fn_data": "resample_data_or_seg_to_shape",
"resampling_fn_seg": "resample_data_or_seg_to_shape",
"resampling_fn_data_kwargs": {
"is_seg": false,
"order": 3,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_seg_kwargs": {
"is_seg": true,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_probabilities": "resample_data_or_seg_to_shape",
"resampling_fn_probabilities_kwargs": {
"is_seg": false,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"architecture": {
"network_class_name": "nnunetv2.models.custom_architectures.UNetWithClassificationBranches",
"arch_kwargs": {
"n_stages": 5,
"features_per_stage": [
32,
64,
128,
256,
512
],
"conv_op": "torch.nn.modules.conv.Conv1d",
"kernel_sizes": [
[
11
],
[
11
],
[
11
],
[
11
],
[
11
]
],
"strides": [
[
1
],
[
2
],
[
2
],
[
2
],
[
2
]
],
"n_conv_per_stage": [
2,
2,
2,
2,
2
],
"n_conv_per_stage_decoder": [
2,
2,
2,
2
],
"conv_bias": true,
"use_encoding_layers_classification_branch": true,
"use_decoding_layers_classification_branch": false,
"num_classes_classification_branch": [
2,
2
],
"features_per_stage_classification_branch": [
[
512,
256,
128
],
[
512,
256,
128
]
],
"kernel_sizes_classification_branch": [
[
17,
17,
17
],
[
17,
17,
17
]
],
"strides_classification_branch": [
[
2,
2,
2
],
[
2,
2,
2
]
],
"norm_op": "torch.nn.modules.instancenorm.InstanceNorm1d",
"norm_op_kwargs": {
"eps": 1e-05,
"affine": true
},
"dropout_op": null,
"dropout_op_kwargs": null,
"nonlin": "torch.nn.LeakyReLU",
"nonlin_kwargs": {
"inplace": true
}
},
"_kw_requires_import": [
"conv_op",
"norm_op",
"dropout_op",
"nonlin"
]
},
"batch_dice": true
},
"1d_tiny_decoding_2": {
"data_identifier": "nnUNetWithClassificationPlans_1d",
"preprocessor_name": "WithClassificationPreprocessor",
"batch_size": 141,
"patch_size": [
2048,
2048,
2048
],
"median_image_size_in_voxels": [
2048.0,
2048.0,
2048.0
],
"spacing": [
1.0,
1.0,
1.0
],
"normalization_schemes": [
"ZScoreNormalization",
"ZScoreNormalization",
"ZScoreNormalization"
],
"use_mask_for_norm": [
false,
false,
false
],
"resampling_fn_data": "resample_data_or_seg_to_shape",
"resampling_fn_seg": "resample_data_or_seg_to_shape",
"resampling_fn_data_kwargs": {
"is_seg": false,
"order": 3,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_seg_kwargs": {
"is_seg": true,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_probabilities": "resample_data_or_seg_to_shape",
"resampling_fn_probabilities_kwargs": {
"is_seg": false,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"architecture": {
"network_class_name": "nnunetv2.models.custom_architectures.UNetWithClassificationBranches",
"arch_kwargs": {
"n_stages": 5,
"features_per_stage": [
32,
64,
128,
256,
512
],
"conv_op": "torch.nn.modules.conv.Conv1d",
"kernel_sizes": [
[
11
],
[
11
],
[
11
],
[
11
],
[
11
]
],
"strides": [
[
1
],
[
2
],
[
2
],
[
2
],
[
2
]
],
"n_conv_per_stage": [
2,
2,
2,
2,
2
],
"n_conv_per_stage_decoder": [
2,
2,
2,
2
],
"conv_bias": true,
"use_encoding_layers_classification_branch": false,
"use_decoding_layers_classification_branch": true,
"num_classes_classification_branch": [
2,
2
],
"features_per_stage_classification_branch": [
[
512,
256,
128
],
[
512,
256,
128
]
],
"kernel_sizes_classification_branch": [
[
17,
17,
17
],
[
17,
17,
17
]
],
"strides_classification_branch": [
[
2,
2,
2
],
[
2,
2,
2
]
],
"norm_op": "torch.nn.modules.instancenorm.InstanceNorm1d",
"norm_op_kwargs": {
"eps": 1e-05,
"affine": true
},
"dropout_op": null,
"dropout_op_kwargs": null,
"nonlin": "torch.nn.LeakyReLU",
"nonlin_kwargs": {
"inplace": true
}
},
"_kw_requires_import": [
"conv_op",
"norm_op",
"dropout_op",
"nonlin"
]
},
"batch_dice": true
},
"1d_tiny_3p_encoding": {
"data_identifier": "nnUNetWithClassificationPlans_1d",
"preprocessor_name": "WithClassificationPreprocessor",
"batch_size": 141,
"patch_size": [
2048,
2048,
2048
],
"median_image_size_in_voxels": [
2048.0,
2048.0,
2048.0
],
"spacing": [
1.0,
1.0,
1.0
],
"normalization_schemes": [
"ZScoreNormalization",
"ZScoreNormalization",
"ZScoreNormalization"
],
"use_mask_for_norm": [
false,
false,
false
],
"resampling_fn_data": "resample_data_or_seg_to_shape",
"resampling_fn_seg": "resample_data_or_seg_to_shape",
"resampling_fn_data_kwargs": {
"is_seg": false,
"order": 3,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_seg_kwargs": {
"is_seg": true,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_probabilities": "resample_data_or_seg_to_shape",
"resampling_fn_probabilities_kwargs": {
"is_seg": false,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"architecture": {
"network_class_name": "nnunetv2.models.custom_architectures.UNet3pWithClassificationBranches",
"arch_kwargs": {
"n_stages": 5,
"features_per_stage": [
32,
64,
128,
256,
512
],
"conv_op": "torch.nn.modules.conv.Conv1d",
"kernel_sizes": [
[
9
],
[
9
],
[
9
],
[
9
],
[
9
]
],
"strides": [
[
1
],
[
2
],
[
2
],
[
2
],
[
2
]
],
"n_conv_per_stage": [
2,
2,
2,
2,
2
],
"n_conv_per_stage_decoder": [
2,
2,
2,
2
],
"conv_bias": true,
"use_encoding_layers_classification_branch": true,
"use_decoding_layers_classification_branch": false,
"num_classes_classification_branch": [
2,
2
],
"features_per_stage_classification_branch": [
[
512
],
[
512
]
],
"kernel_sizes_classification_branch": [
[
17
],
[
17
]
],
"strides_classification_branch": [
[
2
],
[
2
]
],
"norm_op": "torch.nn.modules.instancenorm.InstanceNorm1d",
"norm_op_kwargs": {
"eps": 1e-05,
"affine": true
},
"dropout_op": null,
"dropout_op_kwargs": null,
"nonlin": "torch.nn.LeakyReLU",
"nonlin_kwargs": {
"inplace": true
}
},
"_kw_requires_import": [
"conv_op",
"norm_op",
"dropout_op",
"nonlin"
]
},
"batch_dice": true
},
"1d_tiny_3p_decoding": {
"data_identifier": "nnUNetWithClassificationPlans_1d",
"preprocessor_name": "WithClassificationPreprocessor",
"batch_size": 141,
"patch_size": [
2048,
2048,
2048
],
"median_image_size_in_voxels": [
2048.0,
2048.0,
2048.0
],
"spacing": [
1.0,
1.0,
1.0
],
"normalization_schemes": [
"ZScoreNormalization",
"ZScoreNormalization",
"ZScoreNormalization"
],
"use_mask_for_norm": [
false,
false,
false
],
"resampling_fn_data": "resample_data_or_seg_to_shape",
"resampling_fn_seg": "resample_data_or_seg_to_shape",
"resampling_fn_data_kwargs": {
"is_seg": false,
"order": 3,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_seg_kwargs": {
"is_seg": true,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_probabilities": "resample_data_or_seg_to_shape",
"resampling_fn_probabilities_kwargs": {
"is_seg": false,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"architecture": {
"network_class_name": "nnunetv2.models.custom_architectures.UNet3pWithClassificationBranches",
"arch_kwargs": {
"n_stages": 5,
"features_per_stage": [
32,
64,
128,
256,
512
],
"conv_op": "torch.nn.modules.conv.Conv1d",
"kernel_sizes": [
[
9
],
[
9
],
[
9
],
[
9
],
[
9
]
],
"strides": [
[
1
],
[
2
],
[
2
],
[
2
],
[
2
]
],
"n_conv_per_stage": [
2,
2,
2,
2,
2
],
"n_conv_per_stage_decoder": [
2,
2,
2,
2
],
"conv_bias": true,
"use_encoding_layers_classification_branch": false,
"use_decoding_layers_classification_branch": true,
"num_classes_classification_branch": [
2,
2
],
"features_per_stage_classification_branch": [
[
512
],
[
512
]
],
"kernel_sizes_classification_branch": [
[
17
],
[
17
]
],
"strides_classification_branch": [
[
2
],
[
2
]
],
"norm_op": "torch.nn.modules.instancenorm.InstanceNorm1d",
"norm_op_kwargs": {
"eps": 1e-05,
"affine": true
},
"dropout_op": null,
"dropout_op_kwargs": null,
"nonlin": "torch.nn.LeakyReLU",
"nonlin_kwargs": {
"inplace": true
}
},
"_kw_requires_import": [
"conv_op",
"norm_op",
"dropout_op",
"nonlin"
]
},
"batch_dice": true
},
"1d_tiny_decoding": {
"data_identifier": "nnUNetWithClassificationPlans_1d",
"preprocessor_name": "WithClassificationPreprocessor",
"batch_size": 141,
"patch_size": [
2048,
2048,
2048
],
"median_image_size_in_voxels": [
2048.0,
2048.0,
2048.0
],
"spacing": [
1.0,
1.0,
1.0
],
"normalization_schemes": [
"ZScoreNormalization",
"ZScoreNormalization",
"ZScoreNormalization"
],
"use_mask_for_norm": [
false,
false,
false
],
"resampling_fn_data": "resample_data_or_seg_to_shape",
"resampling_fn_seg": "resample_data_or_seg_to_shape",
"resampling_fn_data_kwargs": {
"is_seg": false,
"order": 3,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_seg_kwargs": {
"is_seg": true,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_probabilities": "resample_data_or_seg_to_shape",
"resampling_fn_probabilities_kwargs": {
"is_seg": false,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"architecture": {
"network_class_name": "nnunetv2.models.custom_architectures.UNetWithClassificationBranches",
"arch_kwargs": {
"n_stages": 5,
"features_per_stage": [
32,
64,
128,
256,
512
],
"conv_op": "torch.nn.modules.conv.Conv1d",
"kernel_sizes": [
[
9
],
[
9
],
[
9
],
[
9
],
[
9
]
],
"strides": [
[
1
],
[
2
],
[
2
],
[
2
],
[
2
]
],
"n_conv_per_stage": [
2,
2,
2,
2,
2
],
"n_conv_per_stage_decoder": [
2,
2,
2,
2
],
"conv_bias": true,
"use_encoding_layers_classification_branch": false,
"use_decoding_layers_classification_branch": true,
"num_classes_classification_branch": [
2,
2
],
"features_per_stage_classification_branch": [
[
512
],
[
512
]
],
"kernel_sizes_classification_branch": [
[
17
],
[
17
]
],
"strides_classification_branch": [
[
2
],
[
2
]
],
"norm_op": "torch.nn.modules.instancenorm.InstanceNorm1d",
"norm_op_kwargs": {
"eps": 1e-05,
"affine": true
},
"dropout_op": null,
"dropout_op_kwargs": null,
"nonlin": "torch.nn.LeakyReLU",
"nonlin_kwargs": {
"inplace": true
}
},
"_kw_requires_import": [
"conv_op",
"norm_op",
"dropout_op",
"nonlin"
]
},
"batch_dice": true
},
"1d_tiny_encoding_decoding": {
"data_identifier": "nnUNetWithClassificationPlans_1d",
"preprocessor_name": "WithClassificationPreprocessor",
"batch_size": 141,
"patch_size": [
2048,
2048,
2048
],
"median_image_size_in_voxels": [
2048.0,
2048.0,
2048.0
],
"spacing": [
1.0,
1.0,
1.0
],
"normalization_schemes": [
"ZScoreNormalization",
"ZScoreNormalization",
"ZScoreNormalization"
],
"use_mask_for_norm": [
false,
false,
false
],
"resampling_fn_data": "resample_data_or_seg_to_shape",
"resampling_fn_seg": "resample_data_or_seg_to_shape",
"resampling_fn_data_kwargs": {
"is_seg": false,
"order": 3,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_seg_kwargs": {
"is_seg": true,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_probabilities": "resample_data_or_seg_to_shape",
"resampling_fn_probabilities_kwargs": {
"is_seg": false,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"architecture": {
"network_class_name": "nnunetv2.models.custom_architectures.UNetWithClassificationBranches",
"arch_kwargs": {
"n_stages": 5,
"features_per_stage": [
32,
64,
128,
256,
512
],
"conv_op": "torch.nn.modules.conv.Conv1d",
"kernel_sizes": [
[
9
],
[
9
],
[
9
],
[
9
],
[
9
]
],
"strides": [
[
1
],
[
2
],
[
2
],
[
2
],
[
2
]
],
"n_conv_per_stage": [
2,
2,
2,
2,
2
],
"n_conv_per_stage_decoder": [
2,
2,
2,
2
],
"conv_bias": true,
"use_encoding_layers_classification_branch": true,
"use_decoding_layers_classification_branch": true,
"num_classes_classification_branch": [
2,
2
],
"features_per_stage_classification_branch": [
[
512
],
[
512
]
],
"kernel_sizes_classification_branch": [
[
17
],
[
17
]
],
"strides_classification_branch": [
[
2
],
[
2
]
],
"norm_op": "torch.nn.modules.instancenorm.InstanceNorm1d",
"norm_op_kwargs": {
"eps": 1e-05,
"affine": true
},
"dropout_op": null,
"dropout_op_kwargs": null,
"nonlin": "torch.nn.LeakyReLU",
"nonlin_kwargs": {
"inplace": true
}
},
"_kw_requires_import": [
"conv_op",
"norm_op",
"dropout_op",
"nonlin"
]
},
"batch_dice": true
}
},
"experiment_planner_used": "UNetWithClassificationPlanner",
"label_manager": "LabelManager",
"foreground_intensity_properties_per_channel": {
"0": {
"max": 10.486477851867676,
"mean": -0.19572360422609777,
"median": -0.20229651033878326,
"min": -14.818507194519043,
"percentile_00_5": -2.0146844387054443,
"percentile_99_5": 1.8262673616409302,
"std": 0.5616268453683911
},
"1": {
"max": 10.486477851867676,
"mean": -0.19572360422609777,
"median": -0.20229651033878326,
"min": -14.818507194519043,
"percentile_00_5": -2.0146844387054443,
"percentile_99_5": 1.8262673616409302,
"std": 0.5616268453683911
},
"2": {
"max": 10.486477851867676,
"mean": -0.19572360422609777,
"median": -0.20229651033878326,
"min": -14.818507194519043,
"percentile_00_5": -2.0146844387054443,
"percentile_99_5": 1.8262673616409302,
"std": 0.5616268453683911
}
}
}